Rh5AG497900

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004521
Physical Location & Seq
Reverse (-)
84464299 .. 84464719
421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG497900.1

Sequence Viewer

Length: 396 bp
ATGAATAGGTTTCGGAAAGATGTTGAAGCCCTGTTAGCTCAACAGAGGAAGGAGCATTACAAAAACATGGAGATCAAGCGACTTGAGAATATAGTCAAGCATAGAGAGGAACGGATTTCGGAACTTGAGAATGACGTAGAAAATATTTCTCATGAGGGTGATGGAGCAGAGATCCAGAGATTGAAGGGCAAGATTGAGGAGTTAAAGGGTGAGATTGAGAAATTTAATGGCGAGATAGAGGAAAATAATGAGAAACTTCAATGTAGAATGAAGAAGACGCAGCAAATGGTGAATCAATTTCAGACCGGGTTCTCTAAAGTTTTCGAAACTCTGGCAGAGTTTTCACGCAAAGCTACAGAAATCTACACTGAGCTTATCAAATGCCTGCGCACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632

Protein Analysis

131

Amino Acids

15.63

Weight (kDa)

6.35

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2730 PF10805 10 - 81 4.1e-06 Protein of unknown function (DUF2730)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 389
AclWI GGATC 1 cut(s) 166
AcsI RAATTY 1 cut(s) 221
AgsI TTSAA 3 cut(s) 26, 184, 260
AluBI AGCT 3 cut(s) 38, 353, 373
AluI AGCT 3 cut(s) 38, 353, 373
AlwI GGATC 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 280
ApoI RAATTY 1 cut(s) 221
AspLEI GCGC 1 cut(s) 390
AsuC2I CCSGG 1 cut(s) 307
AsuHPI GGTGA 3 cut(s) 170, 221, 301
AsuII TTCGAA 1 cut(s) 324
BarI GAAGNNNNNNTAC 2 cut(s) 41, 73
BbsI GAAGAC 1 cut(s) 281
BbvI GCAGC 1 cut(s) 292
BccI CCATC 1 cut(s) 155
BcnI CCSGG 1 cut(s) 307
BfmI CTRYAG 1 cut(s) 354
BisI GCNGC 1 cut(s) 281
BlsI GCNGC 1 cut(s) 282
Bme1390I CCNGG 1 cut(s) 307
BmrFI CCNGG 1 cut(s) 307
BpiI GAAGAC 1 cut(s) 281
Bpu14I TTCGAA 1 cut(s) 324
BpuEI CTTGAG 2 cut(s) 104, 146
BpuMI CCSGG 1 cut(s) 307
BsaAI YACGTR 1 cut(s) 393
BseMII CTCAG 1 cut(s) 360
BseRI GAGGAG 1 cut(s) 212
BseXI GCAGC 1 cut(s) 292
BsiSI CCGG 1 cut(s) 306
Bsp119I TTCGAA 1 cut(s) 324
Bsp143I GATC 2 cut(s) 72, 171
BspCNI CTCAG 1 cut(s) 361
BspHI TCATGA 1 cut(s) 151
BspPI GGATC 1 cut(s) 166
BspT104I TTCGAA 1 cut(s) 324
BssMI GATC 2 cut(s) 72, 171
BstBAI YACGTR 1 cut(s) 393
BstBI TTCGAA 1 cut(s) 324
BstC8I GCNNGC 1 cut(s) 386
BstDEI CTNAG 1 cut(s) 369
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 2 cut(s) 75, 174
BstMBI GATC 2 cut(s) 72, 171
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 305
BstSFI CTRYAG 1 cut(s) 354
BstV1I GCAGC 1 cut(s) 292
BstV2I GAAGAC 1 cut(s) 281
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 366
Cac8I GCNNGC 1 cut(s) 386
CciI TCATGA 1 cut(s) 151
CfoI GCGC 1 cut(s) 390
CseI GACGC 1 cut(s) 286
CviAII CATG 2 cut(s) 67, 152
CviJI RGCY 4 cut(s) 29, 38, 353, 373
CviKI_1 RGCY 4 cut(s) 29, 38, 353, 373
DdeI CTNAG 1 cut(s) 369
DpnI GATC 2 cut(s) 74, 173
DpnII GATC 2 cut(s) 72, 171
FaeI CATG 2 cut(s) 70, 155
FaiI YATR 4 cut(s) 68, 92, 102, 153
FatI CATG 2 cut(s) 66, 151
Fnu4HI GCNGC 1 cut(s) 281
Fsp4HI GCNGC 1 cut(s) 281
FspI TGCGCA 1 cut(s) 389
GlaI GCGC 1 cut(s) 389
GluI GCNGC 1 cut(s) 281
HapII CCGG 1 cut(s) 306
HgaI GACGC 1 cut(s) 286
HhaI GCGC 1 cut(s) 390
Hin1II CATG 2 cut(s) 70, 155
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HinfI GANTC 1 cut(s) 292
HpaII CCGG 1 cut(s) 306
HphI GGTGA 3 cut(s) 170, 221, 301
Hpy188I TCNGA 3 cut(s) 15, 121, 303
Hpy188III TCNNGA 2 cut(s) 152, 175
HpyAV CCTTC 2 cut(s) 43, 178
HpyCH4IV ACGT 2 cut(s) 135, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 369
HpySE526I ACGT 2 cut(s) 135, 392
Hsp92II CATG 2 cut(s) 70, 155
HspAI GCGC 1 cut(s) 388
Kzo9I GATC 2 cut(s) 72, 171
LmnI GCTCC 2 cut(s) 52, 164
LpnPI CCDG 4 cut(s) 44, 188, 317, 319
Lsp1109I GCAGC 1 cut(s) 292
MaeII ACGT 2 cut(s) 135, 392
MalI GATC 2 cut(s) 74, 173
MboI GATC 2 cut(s) 72, 171
MboII GAAGA 2 cut(s) 283, 286
MflI RGATCY 1 cut(s) 171
MluCI AATT 2 cut(s) 221, 296
MnlI CCTC 5 cut(s) 39, 100, 148, 190, 232
MseI TTAA 2 cut(s) 203, 225
MslI CAYNNNNRTG 1 cut(s) 156
MspI CCGG 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 307
MwoI GCNNNNNNNGC 1 cut(s) 35
NciI CCSGG 1 cut(s) 307
NdeII GATC 2 cut(s) 72, 171
NlaIII CATG 2 cut(s) 70, 155
NsbI TGCGCA 1 cut(s) 389
NspV TTCGAA 1 cut(s) 324
PagI TCATGA 1 cut(s) 151
PfeI GAWTC 1 cut(s) 292
PkrI GCNGC 1 cut(s) 282
Ppu21I YACGTR 1 cut(s) 393
PsuI RGATCY 1 cut(s) 171
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 2 cut(s) 203, 225
SatI GCNGC 1 cut(s) 281
Sau3AI GATC 2 cut(s) 72, 171
ScrFI CCNGG 1 cut(s) 307
SetI ASST 6 cut(s) 11, 40, 138, 355, 375, 395
SfcI CTRYAG 1 cut(s) 354
SfuI TTCGAA 1 cut(s) 324
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 2 cut(s) 83, 125
SmoI CTYRAG 2 cut(s) 83, 125
Sse9I AATT 2 cut(s) 221, 296
SspI AATATT 1 cut(s) 145
StyD4I CCNGG 1 cut(s) 305
TaiI ACGT 2 cut(s) 138, 395
TaqI TCGA 1 cut(s) 324
TasI AATT 2 cut(s) 221, 296
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 2 cut(s) 203, 225
Tru9I TTAA 2 cut(s) 203, 225
TscAI CASTG 1 cut(s) 373
TseI GCWGC 1 cut(s) 280
TspDTI ATGAA 2 cut(s) 17, 284
TspGWI ACGGA 1 cut(s) 127
TspRI CASTG 1 cut(s) 373
XapI RAATTY 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.