Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003437.1

Orthogroup ID

OG0004521

Physical Location & Seq

Genomic Coordinates Reverse (-)

31168 .. 32601

Gene Structure 1434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003437.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

atggagtccaatcataaatttctagccaaagaaatatatctttgtaaaaagagacggaaggatctgacaaaggctttagagcgaaggtgtgcccttgcgaaacaacagctgaagtttaatcgctgtcaccaagaagtagccgaggccataaaggcgttcatcgaagaacagaatccctctccctctgaaaccccggaagctagaggcgaactagttgaatcttcgattatggagaatgctgatgagggtggtttgatcacaaggagacaagagaataatgatgtgccagaaaggagggacgtctcgcaattcttgaaggcattggaagaggtcgaaaaacaattttgtaagtcccatgagtctggtaaggatgtctcaaagaagttggaaacagacagtattggaatcaaattagctgcatcatcactaccttcgaaactggtcaggtcactgtcaagaagcagctctagagttggttgttcaaccttttatggttctgaaataatgggtgaaaccctaggagcactgaggcgttgggaggagaaactctatcatgaactgaagacgatcaaaaaggccgaacccaagaggcagaaacccgaagattccagcagcgaaaaccatcctaattcagaaaccgagatgaaaataatgtcgaatgtgaaatgtaaagttgccaaaagggctgctgataatgactccgaagagattacaagattgagaaaggaatgtttgcttcccaaacttggtgagcagctagatgggttggcgggaaactggaaagcaatgtcagagtttcatgaaagccaaaagaagattatgtctcaagtaagagaatctcccaaccatccattactctgcgaagataagcaccaacaagctaccaaaaagctcaaagcacggctttgcaattggctcgactgctttaagtcctacgtttctctacaaaagaaatacacggaatctctttgttggtggctctttcataacgacaaaccaataatactcggagacaatgatggtgattggttgattaacctgaaatatctgaaaagtaatacaaaggaggtgactactgagatgaagaggttccagaaagatgttgcagccctattaggccaacaagggaaggagcatgaccaaaagagggagatcaagcgacttgagagccgactcgagattaagaagctgatgattaatcctgcgaacgagaagcaaaccttggaggagattgagaagttaaagaagaggatcgagagaactaaagagacgcatcaaaggaagatgcaggagacgcagcaaatggtgaatcaatttcagacagggttctctgatgttttcgaaaagctagcggatttttcaagaaaagccaacgaaatctatactgagcttatcaaacacctgccaaaaacccatctggatacgcaaacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

477

Amino Acids

55.4

Weight (kDa)

9.02

Isoelectric Point (pI)

59.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11140 FvH4_3g42260
malus_domestica	MD02G1014200.v1.1
prunus_persica	Prupe.7G172100_v2.0.a1 Prupe.7G174400_v2.0.a1 Prupe.7G174500_v2.0.a1
pyrus_communis	pycom02g01300
rosa_chinensis	RchiOBHm_Chr2g0098421
rosa_laevigata	RLG00000016798 RLG00000036577 RLG00000036578 RLG00000036581
rosa_multiflora	Rmu_sc0003437.1_g000007 Rmu_ssc0000196.1_g000020
rosa_roxburghii	Rroxscaffold_1G00005980
rosa_rugosa	Rorug02G0073100 Rorug05G0440800.1 Rorug05G0441000 Rorug05G0441100
rosa_samantha	Rh2AG120400 Rh2BG123200 Rh2CG124800 Rh2DG124900 Rh5AG497900 Rh5BG518700 Rh5BG518800 Rh5CG542400 Rh5CG542500 Rh5DG530200 Rh5DG530400
rosa_wichuraiana	Rw2G009420 Rw5G046150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1410
AatII	GACGTC	1 cut(s)	303
Acc36I	ACCTGC	1 cut(s)	1410
AciI	CCGC	2 cut(s)	770, 1352
AclWI	GGATC	2 cut(s)	69, 1259
AcsI	RAATTY	1 cut(s)	17
AcuI	CTGAAG	2 cut(s)	131, 581
AcyI	GRCGYC	1 cut(s)	300
AfiI	CCNNNNNNNGG	2 cut(s)	746, 1147
AgsI	TTSAA	4 cut(s)	218, 316, 483, 1362
AhlI	ACTAGT	1 cut(s)	211
AjuI	GAANNNNNNNTTGG	2 cut(s)	1205, 1237
Alw21I	GWGCWC	1 cut(s)	526
Alw26I	GTCTC	8 cut(s)	46, 259, 307, 379, 828, 1005, 1262, 1286
AlwI	GGATC	2 cut(s)	69, 1259
Ama87I	CYCGRG	1 cut(s)	1175
AoxI	GGCC	3 cut(s)	144, 576, 1117
ApeKI	GCWGC	7 cut(s)	416, 462, 612, 686, 754, 1106, 1297
ApoI	RAATTY	1 cut(s)	17
AseI	ATTAAT	1 cut(s)	1197
Asp700I	GAANNNNTTC	1 cut(s)	1088
AspA2I	CCTAGG	1 cut(s)	517
AsuC2I	CCSGG	1 cut(s)	194
AsuHPI	GGTGA	6 cut(s)	119, 521, 761, 1034, 1081, 1318
AsuII	TTCGAA	2 cut(s)	434, 1341
AsuNHI	GCTAGC	1 cut(s)	1348
AvaI	CYCGRG	1 cut(s)	1175
AvrII	CCTAGG	1 cut(s)	517
BaeGI	GKGCMC	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	569
Bbv12I	GWGCWC	1 cut(s)	526
BbvI	GCAGC	7 cut(s)	403, 474, 624, 673, 766, 1118, 1309
BccI	CCATC	5 cut(s)	630, 755, 855, 1013, 1422
BceAI	ACGGC	1 cut(s)	917
BcgI	CGANNNNNNTGC	2 cut(s)	898, 932
BciVI	GTATCC	1 cut(s)	1414
BclI	TGATCA	1 cut(s)	255
BcnI	CCSGG	1 cut(s)	194
BcoDI	GTCTC	8 cut(s)	46, 259, 307, 379, 828, 1005, 1262, 1286
BcuI	ACTAGT	1 cut(s)	211
BfaI	CTAG	7 cut(s)	23, 201, 212, 468, 518, 758, 1349
BfuAI	ACCTGC	1 cut(s)	1410
BfuI	GTATCC	1 cut(s)	1414
BglI	GCCNNNNNGGC	2 cut(s)	152, 683
BisI	GCNGC	7 cut(s)	417, 463, 613, 687, 755, 1107, 1298
BlnI	CCTAGG	1 cut(s)	517
BlsI	GCNGC	7 cut(s)	418, 464, 614, 688, 756, 1108, 1299
Bme1390I	CCNGG	1 cut(s)	194
BmeT110I	CYCGRG	1 cut(s)	1175
BmiI	GGNNCC	1 cut(s)	1091
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	3 cut(s)	428, 1275, 1282
BmtI	GCTAGC	1 cut(s)	1352
BpiI	GAAGAC	1 cut(s)	569
Bpu14I	TTCGAA	2 cut(s)	434, 1341
BpuEI	CTTGAG	2 cut(s)	810, 1184
BpuMI	CCSGG	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	300
BsaJI	CCNNGG	4 cut(s)	141, 192, 517, 1221
Bsc4I	CCNNNNNNNGG	2 cut(s)	746, 1147
Bse1I	ACTGG	2 cut(s)	444, 782
Bse3DI	GCAATG	1 cut(s)	792
BseDI	CCNNGG	4 cut(s)	141, 192, 517, 1221
BseGI	GGATG	3 cut(s)	376, 622, 847
BseLI	CCNNNNNNNGG	2 cut(s)	746, 1147
BseMI	GCAATG	1 cut(s)	792
BseMII	CTCAG	3 cut(s)	518, 1068, 1377
BseNI	ACTGG	2 cut(s)	444, 782
BseRI	GAGGAG	2 cut(s)	554, 1241
BseSI	GKGCMC	1 cut(s)	94
BseXI	GCAGC	7 cut(s)	403, 474, 624, 673, 766, 1118, 1309
BshFI	GGCC	3 cut(s)	146, 578, 1119
BsiHKAI	GWGCWC	1 cut(s)	526
BsiHKCI	CYCGRG	1 cut(s)	1175
BsiSI	CCGG	1 cut(s)	194
BslFI	GGGAC	2 cut(s)	311, 337
BslI	CCNNNNNNNGG	2 cut(s)	746, 1147
BsmAI	GTCTC	8 cut(s)	46, 259, 307, 379, 828, 1005, 1262, 1286
BsmBI	CGTCTC	4 cut(s)	46, 307, 1262, 1286
BsmFI	GGGAC	2 cut(s)	311, 337
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	3 cut(s)	146, 578, 1119
BsoBI	CYCGRG	1 cut(s)	1175
Bsp119I	TTCGAA	2 cut(s)	434, 1341
Bsp1286I	GDGCHC	2 cut(s)	94, 526
Bsp143I	GATC	5 cut(s)	61, 255, 567, 1152, 1251
BspACI	CCGC	2 cut(s)	770, 1352
BspANI	GGCC	3 cut(s)	146, 578, 1119
BspCNI	CTCAG	3 cut(s)	519, 1069, 1378
BspHI	TCATGA	2 cut(s)	553, 799
BspLI	GGNNCC	1 cut(s)	1091
BspMI	ACCTGC	1 cut(s)	1410
BspOI	GCTAGC	1 cut(s)	1352
BspPI	GGATC	2 cut(s)	69, 1259
BspT104I	TTCGAA	2 cut(s)	434, 1341
BsrDI	GCAATG	1 cut(s)	792
BsrI	ACTGG	2 cut(s)	444, 782
BssECI	CCNNGG	4 cut(s)	141, 192, 517, 1221
BssMI	GATC	5 cut(s)	61, 255, 567, 1152, 1251
BssNI	GRCGYC	1 cut(s)	300
BssT1I	CCWWGG	2 cut(s)	517, 1221
Bst4CI	ACNGT	2 cut(s)	398, 453
Bst6I	CTCTTC	4 cut(s)	321, 699, 1079, 1241
BstACI	GRCGYC	1 cut(s)	300
BstBI	TTCGAA	2 cut(s)	434, 1341
BstC8I	GCNNGC	1 cut(s)	1350
BstDEI	CTNAG	3 cut(s)	527, 1077, 1386
BstF5I	GGATG	3 cut(s)	376, 622, 847
BstKTI	GATC	5 cut(s)	64, 258, 570, 1155, 1254
BstMAI	GTCTC	8 cut(s)	46, 259, 307, 379, 828, 1005, 1262, 1286
BstMBI	GATC	5 cut(s)	61, 255, 567, 1152, 1251
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 683, 1294
BstSCI	CCNGG	1 cut(s)	192
BstSLI	GKGCMC	1 cut(s)	94
BstV1I	GCAGC	7 cut(s)	403, 474, 624, 673, 766, 1118, 1309
BstV2I	GAAGAC	1 cut(s)	569
BstX2I	RGATCY	1 cut(s)	61
BstXI	CCANNNNNNTGG	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	61
BsuI	GTATCC	1 cut(s)	1414
BsuRI	GGCC	3 cut(s)	146, 578, 1119
BtsCI	GGATG	3 cut(s)	376, 622, 847
BtsIMutI	CAGTG	2 cut(s)	449, 524
BveI	ACCTGC	1 cut(s)	1410
Cac8I	GCNNGC	1 cut(s)	1350
CciI	TCATGA	2 cut(s)	553, 799
CseI	GACGC	2 cut(s)	1279, 1303
CviAII	CATG	4 cut(s)	356, 554, 800, 1136
DdeI	CTNAG	3 cut(s)	527, 1077, 1386
DpnI	GATC	5 cut(s)	63, 257, 569, 1154, 1253
DpnII	GATC	5 cut(s)	61, 255, 567, 1152, 1251
Eam1104I	CTCTTC	4 cut(s)	321, 699, 1079, 1241
EarI	CTCTTC	4 cut(s)	321, 699, 1079, 1241
Eco130I	CCWWGG	2 cut(s)	517, 1221
Eco57I	CTGAAG	2 cut(s)	131, 581
Eco88I	CYCGRG	1 cut(s)	1175
EcoT14I	CCWWGG	2 cut(s)	517, 1221
ErhI	CCWWGG	2 cut(s)	517, 1221
Esp3I	CGTCTC	4 cut(s)	46, 307, 1262, 1286
FaeI	CATG	4 cut(s)	359, 557, 803, 1139
FalI	AAGNNNNNCTT	4 cut(s)	888, 920, 1205, 1237
FaqI	GGGAC	2 cut(s)	311, 337
FatI	CATG	4 cut(s)	355, 553, 799, 1135
FauI	CCCGC	1 cut(s)	763
FbaI	TGATCA	1 cut(s)	255
Fnu4HI	GCNGC	7 cut(s)	417, 463, 613, 687, 755, 1107, 1298
FokI	GGATG	3 cut(s)	383, 609, 834
Fsp4HI	GCNGC	7 cut(s)	417, 463, 613, 687, 755, 1107, 1298
FspBI	CTAG	7 cut(s)	23, 201, 212, 468, 518, 758, 1349
GluI	GCNGC	7 cut(s)	417, 463, 613, 687, 755, 1107, 1298
HaeIII	GGCC	3 cut(s)	146, 578, 1119
HapII	CCGG	1 cut(s)	194
HgaI	GACGC	2 cut(s)	1279, 1303
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	4 cut(s)	359, 557, 803, 1139
HpaII	CCGG	1 cut(s)	194
HphI	GGTGA	6 cut(s)	119, 521, 761, 1034, 1081, 1318
HpyAV	CCTTC	5 cut(s)	52, 78, 310, 441, 1123
HpyCH4III	ACNGT	2 cut(s)	398, 453
HpyCH4IV	ACGT	2 cut(s)	300, 936
HpyCH4V	TGCA	4 cut(s)	419, 909, 1106, 1288
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 683, 1294
HpyF3I	CTNAG	3 cut(s)	527, 1077, 1386
HpySE526I	ACGT	2 cut(s)	300, 936
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	4 cut(s)	359, 557, 803, 1139
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	5 cut(s)	61, 255, 567, 1152, 1251
LmnI	GCTCC	2 cut(s)	521, 1132
Lsp1109I	GCAGC	7 cut(s)	403, 474, 624, 673, 766, 1118, 1309
LweI	GCATC	3 cut(s)	428, 1275, 1282
MaeI	CTAG	7 cut(s)	23, 201, 212, 468, 518, 758, 1349
MaeII	ACGT	2 cut(s)	300, 936
MaeIII	GTNAC	3 cut(s)	125, 447, 1069
MalI	GATC	5 cut(s)	63, 257, 569, 1154, 1253
MboI	GATC	5 cut(s)	61, 255, 567, 1152, 1251
MfeI	CAATTG	1 cut(s)	910
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	2 cut(s)	94, 526
MluCI	AATT	7 cut(s)	17, 308, 341, 410, 628, 910, 1313
MlyI	GAGTC	4 cut(s)	14, 368, 692, 1167
MmeI	TCCRAC	1 cut(s)	366
MroXI	GAANNNNTTC	1 cut(s)	1088
MseI	TTAA	6 cut(s)	117, 927, 1035, 1182, 1197, 1241
MspA1I	CMGCKG	1 cut(s)	109
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	194
MunI	CAATTG	1 cut(s)	910
Mva1269I	GAATGC	1 cut(s)	241
MwoI	GCNNNNNNNGC	3 cut(s)	152, 683, 1294
NciI	CCSGG	1 cut(s)	194
NdeII	GATC	5 cut(s)	61, 255, 567, 1152, 1251
NheI	GCTAGC	1 cut(s)	1348
NlaIII	CATG	4 cut(s)	359, 557, 803, 1139
NlaIV	GGNNCC	1 cut(s)	1091
NmeAIII	GCCGAG	1 cut(s)	166
NmuCI	GTSAC	3 cut(s)	125, 447, 1069
NspV	TTCGAA	2 cut(s)	434, 1341
PaeR7I	CTCGAG	1 cut(s)	1175
PagI	TCATGA	2 cut(s)	553, 799
PaqCI	CACCTGC	1 cut(s)	1410
PctI	GAATGC	1 cut(s)	241
PdmI	GAANNNNTTC	1 cut(s)	1088
PfeI	GAWTC	7 cut(s)	172, 218, 405, 605, 836, 962, 1309
PkrI	GCNGC	7 cut(s)	418, 464, 614, 688, 756, 1108, 1299
PleI	GAGTC	4 cut(s)	13, 367, 692, 1167
PpsI	GAGTC	4 cut(s)	13, 367, 692, 1167
PshBI	ATTAAT	1 cut(s)	1197
PspN4I	GGNNCC	1 cut(s)	1091
PsuI	RGATCY	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	109
SaqAI	TTAA	6 cut(s)	117, 927, 1035, 1182, 1197, 1241
SatI	GCNGC	7 cut(s)	417, 463, 613, 687, 755, 1107, 1298
Sau3AI	GATC	5 cut(s)	61, 255, 567, 1152, 1251
SchI	GAGTC	4 cut(s)	14, 368, 692, 1167
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	2 cut(s)	94, 526
SfaNI	GCATC	3 cut(s)	428, 1275, 1282
Sfr274I	CTCGAG	1 cut(s)	1175
SfuI	TTCGAA	2 cut(s)	434, 1341
SlaI	CTCGAG	1 cut(s)	1175
SmlI	CTYRAG	3 cut(s)	825, 1163, 1175
SmoI	CTYRAG	3 cut(s)	825, 1163, 1175
SpeI	ACTAGT	1 cut(s)	211
Sse9I	AATT	7 cut(s)	17, 308, 341, 410, 628, 910, 1313
SsiI	CCGC	2 cut(s)	770, 1352
SspMI	CTAG	7 cut(s)	23, 201, 212, 468, 518, 758, 1349
StyD4I	CCNGG	1 cut(s)	192
StyI	CCWWGG	2 cut(s)	517, 1221
TaaI	ACNGT	2 cut(s)	398, 453
TaiI	ACGT	2 cut(s)	303, 939
TaqI	TCGA	9 cut(s)	162, 224, 333, 434, 656, 918, 1176, 1254, 1341
TasI	AATT	7 cut(s)	17, 308, 341, 410, 628, 910, 1313
TfiI	GAWTC	7 cut(s)	172, 218, 405, 605, 836, 962, 1309
Tru1I	TTAA	6 cut(s)	117, 927, 1035, 1182, 1197, 1241
Tru9I	TTAA	6 cut(s)	117, 927, 1035, 1182, 1197, 1241
TscAI	CASTG	2 cut(s)	456, 531
TseFI	GTSAC	3 cut(s)	125, 447, 1069
TseI	GCWGC	7 cut(s)	416, 462, 612, 686, 754, 1106, 1297
Tsp45I	GTSAC	3 cut(s)	125, 447, 1069
TspDTI	ATGAA	7 cut(s)	148, 570, 659, 788, 816, 974, 1097
TspGWI	ACGGA	2 cut(s)	70, 974
TspRI	CASTG	2 cut(s)	456, 531
VspI	ATTAAT	1 cut(s)	1197
XapI	RAATTY	1 cut(s)	17
XbaI	TCTAGA	1 cut(s)	467
XhoI	CTCGAG	1 cut(s)	1175
XmaJI	CCTAGG	1 cut(s)	517
XmnI	GAANNNNTTC	1 cut(s)	1088
XspI	CTAG	7 cut(s)	23, 201, 212, 468, 518, 758, 1349
ZraI	GACGTC	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.