Rorug05G0441000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004521
Physical Location & Seq
Forward (+)
61335382 .. 61339512
4131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0441000.1

Sequence Viewer

Length: 4131 bp
ATGGCGATTGAGAAGAATAACTTCAAGGTTTCGAGGTTGGATTCGGAGGTCTCTCCTGGTAGTAGGAAGAGTGTGTCCAGTGACGATGATGAGCTTCAGCAGCGTAGCTCCGCTGCTGAATCTGATGATGATGATGAGTTTGATGATGCTGACTCCGGGGCCGGGTCGGATGACTTTGATTTGTTGGAACTAGGGGAAACCGGTGTCGAGTATTGCCAGGTTGGGAATCAGACCTGCGGCATTCCTTTCGAGCTGTATGATCTTCCGAGTCTGGAGGATATATTGTCAGTGGATGTGTGGAATGAGTGCTTGAGTGAGGAGGAGCAGTTTGCCCTTACTAAGTATCTGCCTGACATGGACCAGGAGACGTTTATGATTACTCTCAAGGAGCTTTTTACGGGCTGTAACTTCCATTTTGGGAGCCCCGTTACCAAGCTGTTTGATATGTTGAAGGGAGGTTTGTGCGAGCCAAGAGTTGCCCTTTACCGGGAGGGTTTGAATTTCTTTCAGCACCGGCGACACTACAATCTTTTGAGGAAGCATCAGAACACTATGGTTCGTAATCTCTGTCAGATAAGGGATGCTTGGCTTAATTGCAAGGGATACAGTATTGAGGAGAGGCTCCGGGTGTTGAATATAATGAGAATCCAGAAGAGTTTGATGTCTGAGAAGATGGAAGATATGGCCAGTGACTCATCAGAAAGAGATTCAGGTGAAGGTCTACGGAGTAACAAGATCAAGGACAGGAAAGTTGCACAGCAAATCAGTCGTCATTCTCCATATGGGGTGGGCTCGAATATGGATTTTGCATCAAAAGGGCGGTCACCGTCTTTGGAAGTCGCCAAATATGGGAAGCAGAATTCCAAAGGCATGCTGAAGTTGGGTGGGTCAAAGACTCCTTTAGAAAAAGAGCCAGTGAGTTATCCTGGACCATACAGTTCCGCAGCTGTTCTTCCTCGGTCGAATAAGCTTGGGGCGTATGATTCTGGGGCAGCTCTCAGAATGAGGGATCAGATGATAAGTAGTGATGATGCTGAAGAAACAACATATGGAATTGATGTTCAACGGGATCGATTTGCGTCTCGTGGTAGCATGCCTGACAAGTCTGGTCTTCTGAAAGTGGGAAAGAATCTTATAAGAGGTAATGATGTAATCGCTGACAGTTTAATGGGTCTGCCTCTCTCTACAAAAAATGATGTGCATGCTTATGCTAGGAACCGGGATGCAAACCTTTTGTCGGAGGCAAAGGTATTGACAGCAAAACCTCCAAACATGAGGGCTCCATATGATTTTGGTATGAAGACCAAGTATCCAGGAAATATTCAGCAATATGCAGTGGGCGATCAGATGAAATTCTTGAAAGGCAGACTTCCACAGGCACCTTTCAGAGGAGATCGATATGATTCATCCGATCATGCTGATCTATTCTGGAATAACAGGAGTGAAGGGGAGGCTTTCGCTATGGAATCCCCCTTTCGAGCAGATGATTGGAGTCTTAGGAGCAAGAAATGGAAGACTGGGAGGGAGTCTCCTGATTTAAATTACAAGTCCTATAGAGCCTCCCCGCCACAGATGAATGATAGATTTTTATCTTCTGAATTTAGAGCAAAACCATTGCAAGGGAAGATAAGAGGGAATAAACTACATAATGGAGGATCAGACATGGTGGCGTTGAAAGGTAATAGAATGTTTGTTAAAAACGAAGAAACAGAATCAGACTCATCAGATCAATTTGAGGATGATGAGGATAGCAACCCTTTGCTGAGGAGCAAGTTGGCTTATCCCAGTGGCGTTATGGAACCTTCTCCATCTTCATTGTTGATGCCCAGTCTAGATGCAAAAAGAGCCAAATATGCGCAGAAAGAGGTGAAGAATATGCAGGCCCTTGAGGGGATCAATTACTCCTCCAAAAAGATGGGTGGTTTTGTTGATCAAGGAAATATGCGTAGTTTAGATAACTATTCTTCCAAAGGAAAACAGAAGGGTAAGATGGGAGACGGTAGTCCCTTGCATTTGGAAGGGCGCTATTTCCCCAGCTTGGATAAACTTGACGACAATGATGATGATGAACTGAAGCCACTCTACAGATTGGGCAAGAATGCAAAACTTCAAGGGGGACCTGGTGAAAGGTTGCATATACCCTCACTCAAGACTTATACTGCTAGTGGAAAGCAGAAACGAGAAGTTGTTCATGACCATCCTGTTTCACAGTCTCAATACTTTGTTGATGAGGAAGATGATTCCCTTCAAATGCGTTTACTGGGAGATGGTAGTGCACAGGGTAGATCCAGAAACAAAGGCCAGAATGTCGAAGGATATTTGAGGGATCATCGTGAAAGCATTGAGGTCCCAATACTTGGCTGCAGTTTGGTGACAAAGAAGCGGAAAGGGAAAGAGGATGCCATGGATATGAGTAGAGGAGATGAAGATCTACAGTCCAATCATTTGCAACGCAGTGCTGAGTCCCATTCCTTGAAGAAAAAGGTAAAGAGGAAGATGGAGACGGACACTGGTAGTTCAGATATGGAAATTTCTGAGCTCCCAGTTACAGAAATGGGAGCAACAGATATGGAGCTGGAAACCAAGCCCCAGAAAAAGCCATTTATTTTAATTACACCCACTGTTCATACTGGTTTCTCATTCTCGATTATGCATCTTCTTTCAGCAGTTCGCTTGGCAATGATTACTCCACTTTCGGAAGATACTTTAGATGTTGGGGAACCTATAGATGAGAAGAACAAAAGTCAGGAAGGTGGTGCCAATGGCGTTATTACTCATGAAAAGGTGGATGCAAATAACGGTGAGCATGCTGGAGAAGGGAGTACGCCTTTTGTAACAGTTCAGGAGATTGTGAATCGTGTTAGATCGAATCCAGGAGATCCTTGCATTCTTGAAACACAAGAACCACTTCAGGATCTGGTGAGAGGAGTTCTGAAGATTTTTTCATCAAAAACAGCACCTTTAGGGGCGAAGGGTTGGAAGCCATTAGCTGCTTATGAAAAAGCTACAAAAAGTTGGTCATGGACTGGCCCAGTCTCTCATAGTTCATCAGATAATGAGACCATTGAGGAGGTAACATCTCCTGAAGCATGGGGTCTTCCTCACAAGATGCTTGTCAAGTTGGTTGATTCGTTTGCTAATTGGCTCAAATGTGGGCAAGAGACCCTCCAACAAATAGGAAGTCTTCCTGCACCGCCTTTGGAGTTGATGCAGCCCAACGTAGATGAGAAGGAGAGGTTTAGGGACTTAAGAGCTCAAAAGAGTCTTAATACCATCAATCCAAGTTCTGAAGAAGTGAAAGCTTATTTCCGTAAGGAGGAACTTCTTAGGTATTCAGTACCTGACAGGGCCTTCTCTTACACCGCAGCTGATGGTAAAAAATCTATTGTTGCCCCATTGAGAAGATGCGGTGGTAAGCCAACATCAAAAGCCCGAGATCACTTTATGCTGAAACGTGATCGACCGCCGCATGTTACGATCCTTTGTCTTGTGAGAGACGCAGCTGCCAGATTGCCTGGAAGTATTGGAACCAGAGCAGATGTATGTACTTTGATAAGAGATTCTCAGTATATTGTTGAAGATGTGTCTGATACACAAGTGAATCAAGTTGTTAGTGGAGCCCTGGACCGCTTGCATTATGAGCGTGATCCTTGTGTACAGTTTGATGGGGAAAGAAAATTATGGGTCTATTTACATAGAGAAAGAGAAGAAGAAGATTTTGAGGACGATGGTACTTCATCTACAAAGAAATGGAAGAGGCAGAAAAAGGATGCTGCTGATCAAGCTGACCTAGGAGGAGTGACAGTGGCTTATCATGGATCTGAGGAACAATCTGGATATGATTTGTGCTCCGATCTTAATGCAGACCCATCATTTTTGGATGATGACAAGGGAGTGGAACTTGAATACGATGATGTGAGGCAAGATGCAGACGTTGATGTTGATACCAATCAGGGGTCTGAACAAGACGAAATGCGTCAAGACAATCCACTGGTTTGGGAGGGTCTTGACTTGAATCCTATGCGTGAAAGTAAATTGCTTTGTCAGGAAAACTCCACAAATGAAGATTTTGATGATGAAACGTTTGGCAGAGAAAGGACTGTTGGTCTCTTGAGTGCAAGCTTACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1376

Amino Acids

154.12

Weight (kDa)

5.34

Isoelectric Point (pI)

45.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_2nd_NFRKB PF25793 1100 - 1238 7.1e-65 NFRKB second winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1136
Acc16I TGCGCA 1 cut(s) 1857
Acc36I ACCTGC 1 cut(s) 242
AccB1I GGYRCC 2 cut(s) 1378, 2756
AccB7I CCANNNNNTGG 1 cut(s) 2357
AccI GTMKAC 1 cut(s) 721
AclI AACGTT 1 cut(s) 4082
AcoI YGGCCR 1 cut(s) 684
AcsI RAATTY 5 cut(s) 499, 859, 1352, 1598, 2529
AcuI CTGAAG 8 cut(s) 80, 896, 1056, 2093, 2894, 2954, 3105, 3309
AfaI GTAC 5 cut(s) 2824, 3339, 3547, 3657, 3733
AflII CTTAAG 1 cut(s) 3247
AgeI ACCGGT 1 cut(s) 200
AhdI GACNNNNNGTC 1 cut(s) 4104
AjnI CCWGG 9 cut(s) 55, 216, 360, 925, 1312, 2119, 2872, 3514, 3621
AjuI GAANNNNNNNTTGG 2 cut(s) 4086, 4118
AloI GAACNNNNNNTCC 2 cut(s) 1044, 1076
Alw21I GWGCWC 4 cut(s) 2278, 2541, 3256, 3851
Alw44I GTGCAC 1 cut(s) 2274
AlwNI CAGNNNCTG 2 cut(s) 2917, 3341
Ama87I CYCGRG 1 cut(s) 3432
AoxI GGCC 6 cut(s) 159, 684, 1881, 2299, 3028, 3348
ApaLI GTGCAC 1 cut(s) 2274
ApoI RAATTY 5 cut(s) 499, 859, 1352, 1598, 2529
AsiGI ACCGGT 1 cut(s) 200
Asp700I GAANNNNTTC 3 cut(s) 20, 2187, 2907
AspA2I CCTAGG 1 cut(s) 3790
AspLEI GCGC 2 cut(s) 1858, 2025
AspS9I GGNCC 9 cut(s) 159, 358, 929, 1882, 2117, 2347, 3029, 3348, 3625
AsuC2I CCSGG 5 cut(s) 157, 163, 488, 626, 1220
AsuHPI GGTGA 7 cut(s) 725, 816, 1879, 2135, 2383, 2813, 2932
AvaI CYCGRG 1 cut(s) 3432
AvaII GGWCC 5 cut(s) 358, 929, 2117, 2347, 3625
AvrII CCTAGG 1 cut(s) 3790
BaeGI GKGCMC 1 cut(s) 2278
BaeI ACNNNNGTAYC 2 cut(s) 3582, 3615
BalI TGGCCA 1 cut(s) 686
BanI GGYRCC 2 cut(s) 1378, 2756
BanII GRGCYC 6 cut(s) 425, 794, 1282, 2541, 3256, 3622
BarI GAAGNNNNNNTAC 2 cut(s) 2066, 2098
BauI CACGAG 1 cut(s) 1083
BbsI GAAGAC 5 cut(s) 1103, 1307, 1520, 3089, 3176
Bbv12I GWGCWC 4 cut(s) 2278, 2541, 3256, 3851
BbvCI CCTCAGC 1 cut(s) 1763
BcgI CGANNNNNNTGC 6 cut(s) 229, 263, 749, 783, 3842, 3876
BciT130I CCWGG 9 cut(s) 57, 218, 362, 927, 1314, 2121, 2874, 3516, 3623
BciVI GTATCC 2 cut(s) 596, 1320
BclI TGATCA 2 cut(s) 1930, 3778
BcnI CCSGG 5 cut(s) 157, 163, 488, 626, 1220
BfaI CTAG 5 cut(s) 191, 1212, 1832, 2163, 3791
BfmI CTRYAG 5 cut(s) 1552, 2083, 2362, 2432, 2724
BfoI RGCGCY 1 cut(s) 2026
BfrI CTTAAG 1 cut(s) 3247
BfuAI ACCTGC 1 cut(s) 242
BfuI GTATCC 2 cut(s) 596, 1320
BglII AGATCT 1 cut(s) 2428
BlnI CCTAGG 1 cut(s) 3790
Bme18I GGWCC 5 cut(s) 358, 929, 2117, 2347, 3625
BmeRI GACNNNNNGTC 1 cut(s) 4104
BmeT110I CYCGRG 1 cut(s) 3432
BmgT120I GGNCC 9 cut(s) 159, 358, 929, 1882, 2117, 2347, 3029, 3348, 3625
BmrI ACTGGG 6 cut(s) 1527, 1779, 1821, 2270, 2537, 3026
BmuI ACTGGG 6 cut(s) 1527, 1779, 1821, 2270, 2537, 3026
BoxI GACNNNNGTC 1 cut(s) 2001
BpiI GAAGAC 5 cut(s) 1103, 1307, 1520, 3089, 3176
BplI GAGNNNNNCTC 2 cut(s) 1513, 1545
BpmI CTGGAG 2 cut(s) 293, 2832
Bpu10I CCTNAGC 1 cut(s) 1763
BpuEI CTTGAG 4 cut(s) 331, 368, 1907, 2132
BpuMI CCSGG 5 cut(s) 157, 163, 488, 626, 1220
Bsa29I ATCGAT 2 cut(s) 1072, 1396
BsaBI GATNNNNATC 3 cut(s) 1588, 2427, 3948
BsaI GGTCTC 4 cut(s) 55, 3053, 3155, 4112
BsaJI CCNNGG 5 cut(s) 156, 956, 2403, 3621, 3790
BsaWI WCCGGW 1 cut(s) 200
BsaXI ACNNNNNCTCC 4 cut(s) 311, 341, 3789, 3819
Bse118I RCCGGY 2 cut(s) 200, 513
Bse3DI GCAATG 2 cut(s) 1613, 2685
Bse8I GATNNNNATC 3 cut(s) 1588, 2427, 3948
BseBI CCWGG 9 cut(s) 57, 218, 362, 927, 1314, 2121, 2874, 3516, 3623
BseCI ATCGAT 2 cut(s) 1072, 1396
BseDI CCNNGG 5 cut(s) 156, 956, 2403, 3621, 3790
BseJI GATNNNNATC 3 cut(s) 1588, 2427, 3948
BseMI GCAATG 2 cut(s) 1613, 2685
BseMII CTCAG 7 cut(s) 657, 1012, 1754, 2451, 2526, 3578, 3813
BseSI GKGCMC 1 cut(s) 2278
BseYI CCCAGC 1 cut(s) 2033
BsgI GTGCAG 1 cut(s) 3174
Bsh1285I CGRYCG 2 cut(s) 962, 3464
BshFI GGCC 6 cut(s) 161, 686, 1883, 2301, 3030, 3350
BshNI GGYRCC 2 cut(s) 1378, 2756
BshTI ACCGGT 1 cut(s) 200
BshVI ATCGAT 2 cut(s) 1072, 1396
BsiEI CGRYCG 2 cut(s) 962, 3464
BsiHKAI GWGCWC 4 cut(s) 2278, 2541, 3256, 3851
BsiHKCI CYCGRG 1 cut(s) 3432
BsiSI CCGG 7 cut(s) 156, 162, 201, 487, 514, 625, 1219
BslFI GGGAC 5 cut(s) 1989, 2130, 2333, 2449, 3257
BsmBI CGTCTC 5 cut(s) 359, 1086, 1989, 2495, 3489
BsmFI GGGAC 5 cut(s) 1989, 2130, 2333, 2449, 3257
BsmI GAATGC 3 cut(s) 240, 2104, 2886
BsnI GGCC 6 cut(s) 161, 686, 1883, 2301, 3030, 3350
Bso31I GGTCTC 4 cut(s) 55, 3053, 3155, 4112
BsoBI CYCGRG 1 cut(s) 3432
Bsp1286I GDGCHC 8 cut(s) 425, 794, 1282, 2278, 2541, 3256, 3622, 3851
Bsp1407I TGTACA 1 cut(s) 3655
Bsp19I CCATGG 1 cut(s) 2403
BspANI GGCC 6 cut(s) 161, 686, 1883, 2301, 3030, 3350
BspCNI CTCAG 7 cut(s) 658, 1011, 1755, 2452, 2527, 3577, 3814
BspDI ATCGAT 2 cut(s) 1072, 1396
BspHI TCATGA 2 cut(s) 2191, 2776
BspMAI CTGCAG 1 cut(s) 2366
BspMI ACCTGC 1 cut(s) 242
BspT107I GGYRCC 2 cut(s) 1378, 2756
BspTI CTTAAG 1 cut(s) 3247
BspTNI GGTCTC 4 cut(s) 55, 3053, 3155, 4112
BsrDI GCAATG 2 cut(s) 1613, 2685
BsrFI RCCGGY 2 cut(s) 200, 513
BsrGI TGTACA 1 cut(s) 3655
BssAI RCCGGY 2 cut(s) 200, 513
BssECI CCNNGG 5 cut(s) 156, 956, 2403, 3621, 3790
BssSI CACGAG 1 cut(s) 1083
BssT1I CCWWGG 2 cut(s) 2403, 3790
Bst2BI CACGAG 1 cut(s) 1083
Bst2UI CCWGG 9 cut(s) 57, 218, 362, 927, 1314, 2121, 2874, 3516, 3623
Bst6I CTCTTC 3 cut(s) 62, 647, 3749
BstAFI CTTAAG 1 cut(s) 3247
BstAUI TGTACA 1 cut(s) 3655
BstC8I GCNNGC 8 cut(s) 467, 872, 1094, 1203, 1881, 2808, 3632, 4120
BstDSI CCRYGG 1 cut(s) 2403
BstEII GGTNACC 1 cut(s) 822
BstENI CCTNNNNNAGG 1 cut(s) 1386
BstH2I RGCGCY 1 cut(s) 2026
BstHHI GCGC 2 cut(s) 1858, 2025
BstMCI CGRYCG 2 cut(s) 962, 3464
BstMWI GCNNNNNNNGC 5 cut(s) 100, 1844, 1853, 3640, 3782
BstNI CCWGG 9 cut(s) 57, 218, 362, 927, 1314, 2121, 2874, 3516, 3623
BstNSI RCATGY 5 cut(s) 874, 1096, 1205, 2810, 3473
BstPAI GACNNNNGTC 1 cut(s) 2001
BstPI GGTNACC 1 cut(s) 822
BstSFI CTRYAG 5 cut(s) 1552, 2083, 2362, 2432, 2724
BstSLI GKGCMC 1 cut(s) 2278
BstV2I GAAGAC 5 cut(s) 1103, 1307, 1520, 3089, 3176
BstX2I RGATCY 5 cut(s) 2285, 2428, 2878, 2914, 3818
BstXI CCANNNNNNTGG 2 cut(s) 1915, 3996
BstYI RGATCY 5 cut(s) 2285, 2428, 2878, 2914, 3818
Bsu15I ATCGAT 2 cut(s) 1072, 1396
BsuI GTATCC 2 cut(s) 596, 1320
BsuRI GGCC 6 cut(s) 161, 686, 1883, 2301, 3030, 3350
BsuTUI ATCGAT 2 cut(s) 1072, 1396
BtgI CCRYGG 1 cut(s) 2403
BtsI GCAGTG 2 cut(s) 1341, 2461
BveI ACCTGC 1 cut(s) 242
Cac8I GCNNGC 8 cut(s) 467, 872, 1094, 1203, 1881, 2808, 3632, 4120
CaiI CAGNNNCTG 2 cut(s) 2917, 3341
CciI TCATGA 2 cut(s) 2191, 2776
CfoI GCGC 2 cut(s) 1858, 2025
Cfr10I RCCGGY 2 cut(s) 200, 513
Cfr13I GGNCC 9 cut(s) 159, 358, 929, 1882, 2117, 2347, 3029, 3348, 3625
ClaI ATCGAT 2 cut(s) 1072, 1396
CseI GACGC 3 cut(s) 1068, 3506, 3965
CsiI ACCWGGT 1 cut(s) 2119
Csp6I GTAC 5 cut(s) 2823, 3338, 3546, 3656, 3732
CspAI ACCGGT 1 cut(s) 200
CviQI GTAC 5 cut(s) 2823, 3338, 3546, 3656, 3732
DraI TTTAAA 1 cut(s) 1539
DriI GACNNNNNGTC 1 cut(s) 4104
EaeI YGGCCR 1 cut(s) 684
Eam1104I CTCTTC 3 cut(s) 62, 647, 3749
Eam1105I GACNNNNNGTC 1 cut(s) 4104
EarI CTCTTC 3 cut(s) 62, 647, 3749
Ecl136II GAGCTC 2 cut(s) 2539, 3254
Eco130I CCWWGG 2 cut(s) 2403, 3790
Eco24I GRGCYC 6 cut(s) 425, 794, 1282, 2541, 3256, 3622
Eco31I GGTCTC 4 cut(s) 55, 3053, 3155, 4112
Eco47I GGWCC 5 cut(s) 358, 929, 2117, 2347, 3625
Eco53kI GAGCTC 2 cut(s) 2539, 3254
Eco57I CTGAAG 8 cut(s) 80, 896, 1056, 2093, 2894, 2954, 3105, 3309
Eco88I CYCGRG 1 cut(s) 3432
Eco91I GGTNACC 1 cut(s) 822
EcoICRI GAGCTC 2 cut(s) 2539, 3254
EcoNI CCTNNNNNAGG 1 cut(s) 1386
EcoO109I RGGNCCY 4 cut(s) 1882, 2117, 2347, 3348
EcoO65I GGTNACC 1 cut(s) 822
EcoRI GAATTC 1 cut(s) 859
EcoRII CCWGG 9 cut(s) 55, 216, 360, 925, 1312, 2119, 2872, 3514, 3621
EcoT14I CCWWGG 2 cut(s) 2403, 3790
EcoT22I ATGCAT 1 cut(s) 2655
EcoT38I GRGCYC 6 cut(s) 425, 794, 1282, 2541, 3256, 3622
ErhI CCWWGG 2 cut(s) 2403, 3790
Esp3I CGTCTC 5 cut(s) 359, 1086, 1989, 2495, 3489
FalI AAGNNNNNCTT 7 cut(s) 37, 568, 600, 1353, 1385, 2892, 2924
FaqI GGGAC 5 cut(s) 1989, 2130, 2333, 2449, 3257
FauI CCCGC 1 cut(s) 1572
FauNDI CATATG 3 cut(s) 781, 1048, 1285
FbaI TGATCA 2 cut(s) 1930, 3778
FblI GTMKAC 1 cut(s) 721
FriOI GRGCYC 6 cut(s) 425, 794, 1282, 2541, 3256, 3622
FspBI CTAG 5 cut(s) 191, 1212, 1832, 2163, 3791
FspI TGCGCA 1 cut(s) 1857
GlaI GCGC 2 cut(s) 1857, 2024
GsaI CCCAGC 1 cut(s) 2037
GsuI CTGGAG 2 cut(s) 293, 2832
HaeII RGCGCY 1 cut(s) 2026
HaeIII GGCC 6 cut(s) 161, 686, 1883, 2301, 3030, 3350
HapII CCGG 7 cut(s) 156, 162, 201, 487, 514, 625, 1219
HgaI GACGC 3 cut(s) 1068, 3506, 3965
HhaI GCGC 2 cut(s) 1858, 2025
Hin6I GCGC 2 cut(s) 1856, 2023
HinP1I GCGC 2 cut(s) 1856, 2023
HindIII AAGCTT 3 cut(s) 968, 3300, 4120
HpaII CCGG 7 cut(s) 156, 162, 201, 487, 514, 625, 1219
HphI GGTGA 7 cut(s) 725, 816, 1879, 2135, 2383, 2813, 2932
Hpy166II GTNNAC 4 cut(s) 722, 2258, 2276, 3656
Hpy8I GTNNAC 4 cut(s) 722, 2258, 2276, 3656
HpyCH4IV ACGT 5 cut(s) 368, 3219, 3454, 3933, 4082
HpyF10VI GCNNNNNNNGC 5 cut(s) 100, 1844, 1853, 3640, 3782
HpySE526I ACGT 5 cut(s) 368, 3219, 3454, 3933, 4082
HspAI GCGC 2 cut(s) 1856, 2023
Ksp22I TGATCA 2 cut(s) 1930, 3778
MabI ACCWGGT 1 cut(s) 2119
MaeI CTAG 5 cut(s) 191, 1212, 1832, 2163, 3791
MaeII ACGT 5 cut(s) 368, 3219, 3454, 3933, 4082
MflI RGATCY 5 cut(s) 2285, 2428, 2878, 2914, 3818
MhlI GDGCHC 8 cut(s) 425, 794, 1282, 2278, 2541, 3256, 3622, 3851
MlsI TGGCCA 1 cut(s) 686
MluNI TGGCCA 1 cut(s) 686
MlyI GAGTC 9 cut(s) 146, 277, 686, 889, 1501, 1535, 1712, 2471, 3271
MmeI TCCRAC 6 cut(s) 18, 147, 165, 1218, 2957, 3193
Mox20I TGGCCA 1 cut(s) 686
Mph1103I ATGCAT 1 cut(s) 2655
MroXI GAANNNNTTC 3 cut(s) 20, 2187, 2907
MscI TGGCCA 1 cut(s) 686
MseI TTAA 8 cut(s) 591, 1166, 1538, 1695, 2609, 3248, 3267, 3858
MslI CAYNNNNRTG 2 cut(s) 1206, 2408
Msp20I TGGCCA 1 cut(s) 686
MspA1I CMGCKG 4 cut(s) 113, 947, 3368, 3503
MspCI CTTAAG 1 cut(s) 3247
MspI CCGG 7 cut(s) 156, 162, 201, 487, 514, 625, 1219
Mva1269I GAATGC 3 cut(s) 240, 2104, 2886
MvaI CCWGG 9 cut(s) 57, 218, 362, 927, 1314, 2121, 2874, 3516, 3623
MwoI GCNNNNNNNGC 5 cut(s) 100, 1844, 1853, 3640, 3782
NciI CCSGG 5 cut(s) 157, 163, 488, 626, 1220
NcoI CCATGG 1 cut(s) 2403
NdeI CATATG 3 cut(s) 781, 1048, 1285
NmuCI GTSAC 5 cut(s) 80, 689, 822, 2371, 3799
NsbI TGCGCA 1 cut(s) 1857
NsiI ATGCAT 1 cut(s) 2655
NspI RCATGY 5 cut(s) 874, 1096, 1205, 2810, 3473
PaeI GCATGC 4 cut(s) 874, 1096, 1205, 2810
PagI TCATGA 2 cut(s) 2191, 2776
PctI GAATGC 3 cut(s) 240, 2104, 2886
PdmI GAANNNNTTC 3 cut(s) 20, 2187, 2907
PflMI CCANNNNNTGG 1 cut(s) 2357
PfoI TCCNGGA 3 cut(s) 925, 1312, 2872
PinAI ACCGGT 1 cut(s) 200
PleI GAGTC 9 cut(s) 146, 276, 686, 889, 1500, 1534, 1712, 2470, 3270
PpsI GAGTC 9 cut(s) 146, 276, 686, 889, 1500, 1534, 1712, 2470, 3270
PpuMI RGGWCCY 2 cut(s) 2117, 2347
PshAI GACNNNNGTC 1 cut(s) 2001
PsiI TTATAA 1 cut(s) 1136
Psp124BI GAGCTC 2 cut(s) 2541, 3256
Psp1406I AACGTT 1 cut(s) 4082
Psp5II RGGWCCY 2 cut(s) 2117, 2347
Psp6I CCWGG 9 cut(s) 55, 216, 360, 925, 1312, 2119, 2872, 3514, 3621
PspEI GGTNACC 1 cut(s) 822
PspFI CCCAGC 1 cut(s) 2033
PspGI CCWGG 9 cut(s) 55, 216, 360, 925, 1312, 2119, 2872, 3514, 3621
PspPI GGNCC 9 cut(s) 159, 358, 929, 1882, 2117, 2347, 3029, 3348, 3625
PspPPI RGGWCCY 2 cut(s) 2117, 2347
PstI CTGCAG 1 cut(s) 2366
PstNI CAGNNNCTG 2 cut(s) 2917, 3341
PsuI RGATCY 5 cut(s) 2285, 2428, 2878, 2914, 3818
PvuII CAGCTG 3 cut(s) 947, 3368, 3503
RsaI GTAC 5 cut(s) 2824, 3339, 3547, 3657, 3733
RsaNI GTAC 5 cut(s) 2823, 3338, 3546, 3656, 3732
RseI CAYNNNNRTG 2 cut(s) 1206, 2408
SacI GAGCTC 2 cut(s) 2541, 3256
SaqAI TTAA 8 cut(s) 591, 1166, 1538, 1695, 2609, 3248, 3267, 3858
Sau96I GGNCC 9 cut(s) 159, 358, 929, 1882, 2117, 2347, 3029, 3348, 3625
SchI GAGTC 9 cut(s) 146, 277, 686, 889, 1501, 1535, 1712, 2471, 3271
SduI GDGCHC 8 cut(s) 425, 794, 1282, 2278, 2541, 3256, 3622, 3851
SexAI ACCWGGT 1 cut(s) 2119
SfcI CTRYAG 5 cut(s) 1552, 2083, 2362, 2432, 2724
SgrAI CRCCGGYG 1 cut(s) 513
SinI GGWCC 5 cut(s) 358, 929, 2117, 2347, 3625
SmiI ATTTAAAT 1 cut(s) 1539
SmiMI CAYNNNNRTG 2 cut(s) 1206, 2408
SmlI CTYRAG 6 cut(s) 310, 383, 1886, 2147, 3247, 4111
SmoI CTYRAG 6 cut(s) 310, 383, 1886, 2147, 3247, 4111
SphI GCATGC 4 cut(s) 874, 1096, 1205, 2810
SspI AATATT 1 cut(s) 1321
SspMI CTAG 5 cut(s) 191, 1212, 1832, 2163, 3791
SstI GAGCTC 2 cut(s) 2541, 3256
StyI CCWWGG 2 cut(s) 2403, 3790
SwaI ATTTAAAT 1 cut(s) 1539
TaiI ACGT 5 cut(s) 371, 3222, 3457, 3936, 4085
TaqII GACCGA 1 cut(s) 948
TatI WGTACW 2 cut(s) 3545, 3655
TauI GCSGC 2 cut(s) 240, 3469
Tru1I TTAA 8 cut(s) 591, 1166, 1538, 1695, 2609, 3248, 3267, 3858
Tru9I TTAA 8 cut(s) 591, 1166, 1538, 1695, 2609, 3248, 3267, 3858
TseFI GTSAC 5 cut(s) 80, 689, 822, 2371, 3799
Tsp45I GTSAC 5 cut(s) 80, 689, 822, 2371, 3799
TspGWI ACGGA 3 cut(s) 739, 2519, 3299
Van91I CCANNNNNTGG 1 cut(s) 2357
Vha464I CTTAAG 1 cut(s) 3247
VneI GTGCAC 1 cut(s) 2274
VpaK11BI GGWCC 5 cut(s) 358, 929, 2117, 2347, 3625
XagI CCTNNNNNAGG 1 cut(s) 1386
XapI RAATTY 5 cut(s) 499, 859, 1352, 1598, 2529
XbaI TCTAGA 1 cut(s) 1831
XceI RCATGY 5 cut(s) 874, 1096, 1205, 2810, 3473
XcmI CCANNNNNNNNNTGG 1 cut(s) 1792
XmaJI CCTAGG 1 cut(s) 3790
XmiI GTMKAC 1 cut(s) 721
XmnI GAANNNNTTC 3 cut(s) 20, 2187, 2907
XspI CTAG 5 cut(s) 191, 1212, 1832, 2163, 3791
Zsp2I ATGCAT 1 cut(s) 2655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.