Rh5DG530200

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0004521
Physical Location & Seq
Forward (+)
81841701 .. 81842132
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG530200.1

Sequence Viewer

Length: 432 bp
ATGATATTTGATTGCTTAGAGTCTGGTGAGTATGTCTCAAAGAAGTTGGAGACAAAAAGTATTGAAAACAAGCCTAAATCATTGCAAACTCCCAAACTCTTCCGCTCACTATCAAGGAGCAGCTCTAGAGTTCGTTGTTCAATTTTTGCAGAATCTGAAATAATGGGTTCAACACTGACACGATTGAAGCTGTGGGAGGAGAAACTCTACAAGGATTTGAAGTACGAAAAGGAAGCCATGAAATCAGATAAGAGCAATCCCCATGCAGAAACCAAGAAAAAGGAGGATCAGATCATAATGGTGAACAAAATTAAGGTTTTCCAAGAGAGTGCTGAAAACAACTCTAAGAAAAGTACTGAATTGAGAGACAAACAGTTGCTTCCCAAACTAGTTGAGAAGCTAGATGGGATGATGGAAAACTGGAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632

Protein Analysis

143

Amino Acids

16.72

Weight (kDa)

9.32

Isoelectric Point (pI)

40.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF632 PF04782 13 - 142 2.3e-08 Protein of unknown function (DUF632)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 105
AciI CCGC 1 cut(s) 103
AclWI GGATC 1 cut(s) 294
AfaI GTAC 2 cut(s) 224, 355
AgsI TTSAA 5 cut(s) 65, 141, 171, 187, 220
AhlI ACTAGT 1 cut(s) 388
AluBI AGCT 3 cut(s) 123, 190, 400
AluI AGCT 3 cut(s) 123, 190, 400
Alw26I GTCTC 3 cut(s) 40, 44, 360
AlwI GGATC 1 cut(s) 294
AlwNI CAGNNNCTG 1 cut(s) 155
ApeKI GCWGC 1 cut(s) 120
AsuHPI GGTGA 2 cut(s) 38, 313
BbvI GCAGC 1 cut(s) 132
BccI CCATC 2 cut(s) 398, 406
BcoDI GTCTC 3 cut(s) 40, 44, 360
BcuI ACTAGT 1 cut(s) 388
BfaI CTAG 3 cut(s) 126, 389, 401
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
BmcAI AGTACT 1 cut(s) 355
BplI GAGNNNNNCTC 2 cut(s) 20, 52
Bse1I ACTGG 1 cut(s) 425
Bse3DI GCAATG 1 cut(s) 80
BseGI GGATG 1 cut(s) 414
BseMI GCAATG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 425
BseRI GAGGAG 1 cut(s) 212
BseXI GCAGC 1 cut(s) 132
BsmAI GTCTC 3 cut(s) 40, 44, 360
Bsp143I GATC 2 cut(s) 286, 291
BspACI CCGC 1 cut(s) 103
BspPI GGATC 1 cut(s) 294
BsrBI CCGCTC 1 cut(s) 105
BsrDI GCAATG 1 cut(s) 80
BsrI ACTGG 1 cut(s) 425
BssMI GATC 2 cut(s) 286, 291
Bst4CI ACNGT 1 cut(s) 375
Bst6I CTCTTC 1 cut(s) 104
BstDEI CTNAG 2 cut(s) 16, 345
BstF5I GGATG 1 cut(s) 414
BstKTI GATC 2 cut(s) 289, 294
BstMAI GTCTC 3 cut(s) 40, 44, 360
BstMBI GATC 2 cut(s) 286, 291
BstV1I GCAGC 1 cut(s) 132
BtsCI GGATG 1 cut(s) 414
BtsIMutI CAGTG 1 cut(s) 173
CaiI CAGNNNCTG 1 cut(s) 155
Csp6I GTAC 2 cut(s) 223, 354
CviAII CATG 2 cut(s) 238, 263
CviJI RGCY 5 cut(s) 73, 123, 190, 236, 400
CviKI_1 RGCY 5 cut(s) 73, 123, 190, 236, 400
CviQI GTAC 2 cut(s) 223, 354
DdeI CTNAG 2 cut(s) 16, 345
DpnI GATC 2 cut(s) 288, 293
DpnII GATC 2 cut(s) 286, 291
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
FaeI CATG 2 cut(s) 241, 266
FaiI YATR 4 cut(s) 33, 239, 264, 296
FatI CATG 2 cut(s) 237, 262
Fnu4HI GCNGC 1 cut(s) 121
FokI GGATG 1 cut(s) 421
Fsp4HI GCNGC 1 cut(s) 121
FspBI CTAG 3 cut(s) 126, 389, 401
GluI GCNGC 1 cut(s) 121
Hin1II CATG 2 cut(s) 241, 266
HinfI GANTC 2 cut(s) 20, 152
HphI GGTGA 2 cut(s) 38, 313
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 4 cut(s) 157, 247, 291, 431
Hpy188III TCNNGA 1 cut(s) 126
Hpy8I GTNNAC 1 cut(s) 304
HpyCH4III ACNGT 1 cut(s) 375
HpyCH4V TGCA 3 cut(s) 85, 149, 266
HpyF3I CTNAG 2 cut(s) 16, 345
Hsp92II CATG 2 cut(s) 241, 266
Kzo9I GATC 2 cut(s) 286, 291
LmnI GCTCC 1 cut(s) 117
LpnPI CCDG 2 cut(s) 9, 406
Lsp1109I GCAGC 1 cut(s) 132
MaeI CTAG 3 cut(s) 126, 389, 401
MalI GATC 2 cut(s) 288, 293
MbiI CCGCTC 1 cut(s) 105
MboI GATC 2 cut(s) 286, 291
MboII GAAGA 1 cut(s) 91
MluCI AATT 3 cut(s) 141, 309, 359
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 2 cut(s) 190, 277
MseI TTAA 1 cut(s) 312
MslI CAYNNNNRTG 1 cut(s) 299
NdeII GATC 2 cut(s) 286, 291
NlaIII CATG 2 cut(s) 241, 266
PfeI GAWTC 1 cut(s) 152
PkrI GCNGC 1 cut(s) 122
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PstNI CAGNNNCTG 1 cut(s) 155
RsaI GTAC 2 cut(s) 224, 355
RsaNI GTAC 2 cut(s) 223, 354
RseI CAYNNNNRTG 1 cut(s) 299
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 1 cut(s) 121
Sau3AI GATC 2 cut(s) 286, 291
ScaI AGTACT 1 cut(s) 355
SchI GAGTC 1 cut(s) 29
SetI ASST 4 cut(s) 125, 192, 318, 402
SmiMI CAYNNNNRTG 1 cut(s) 299
SpeI ACTAGT 1 cut(s) 388
Sse9I AATT 3 cut(s) 141, 309, 359
SsiI CCGC 1 cut(s) 103
SspMI CTAG 3 cut(s) 126, 389, 401
TaaI ACNGT 1 cut(s) 375
TasI AATT 3 cut(s) 141, 309, 359
TatI WGTACW 1 cut(s) 353
TfiI GAWTC 1 cut(s) 152
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 1 cut(s) 180
TseI GCWGC 1 cut(s) 120
TspDTI ATGAA 1 cut(s) 254
TspRI CASTG 1 cut(s) 180
XbaI TCTAGA 1 cut(s) 125
XspI CTAG 3 cut(s) 126, 389, 401
ZrmI AGTACT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.