Rorug05G0441100

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004521
Physical Location & Seq
Reverse (-)
61341764 .. 61343583
1820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0441100.1

Sequence Viewer

Length: 879 bp
ATGACTGAGCCGTGCACAAGCAAGAGAAAATGGGATCAGTTTGTTCATGTTTCACACAAGGCTGTCCAGACCCAGATGGAAATCGATGACAACTTGGGTTTGAACATGAAGGATACTACTCCTGCGGAAAAGACATTCAGAGAATTGCAGGAAGATTTGAGAAAGATTCATGCCAAGATTGTAGAGCAGGAAGAGATCTTTATGAAGGAGAGAGCTAAATGGGAAGCTGAAAACAGGTGTCACTACAGCAAGAATGAGTTTTTTATCAACAGATGTCGTTGGGAAACAGAATATAAGAAACGACACTTTCAGAGTGTATATGAATATAGAAGGAAGGCTGTTAAAGATGTCCCTCGCTTTTGGGTTACAGCAATGTATGCTAACAAGATAATTCGTAAGGAGATTGCAAAGCACGATCAAGATGCTCTCGAATTCCTGAAGGATATCAAGTCATGTAGGACAGATGATCTAAAAGGATTCCAGCTGGAATTCATGTTTGATTCTTCCAATCCTTATTTCAAAAATGAGGTCCTCACCAAAAAGTATGAGCTGAAGGATGGAGGAGAGTGTACATTCTTGATGGCAGTTGGGACGGAAATCAACTGGTATCCTGGCAAAACCTTGACAGAAAGTATTGAGAAAATGACCATTGGATCTGAGGTTGTTCAAGTAGTCCAAACATGTCAAAGTTTCTTCAACTTCTTTGCTACGAAGACTCATCGGACTTCTCTTTGTTTGGATGAAGATGCTGATAAACTCGAAGGCAATATTATTCCCCTGGATTATGCAATCGCTGTCATACTTAGAGATGATATCGTTCCACACGCAATATCGTGGTTTAATTATGATGAAGAAGGTGCTATGGATGAAGAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632

Protein Analysis

292

Amino Acids

34.57

Weight (kDa)

5.44

Isoelectric Point (pI)

49.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 39 - 280 9.3e-45 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 125
AclWI GGATC 2 cut(s) 42, 661
AcsI RAATTY 2 cut(s) 431, 488
AcuI CTGAAG 2 cut(s) 458, 572
AfaI GTAC 1 cut(s) 571
AflIII ACRYGT 1 cut(s) 680
AgsI TTSAA 4 cut(s) 103, 520, 668, 697
AjnI CCWGG 2 cut(s) 610, 777
AjuI GAANNNNNNNTTGG 2 cut(s) 500, 532
AluBI AGCT 4 cut(s) 215, 227, 484, 550
AluI AGCT 4 cut(s) 215, 227, 484, 550
Alw21I GWGCWC 1 cut(s) 17
Alw44I GTGCAC 1 cut(s) 13
AlwI GGATC 2 cut(s) 42, 661
ApaLI GTGCAC 1 cut(s) 13
ApoI RAATTY 2 cut(s) 431, 488
ArsI GACNNNNNNTTYG 2 cut(s) 513, 545
AspS9I GGNCC 1 cut(s) 529
AsuHPI GGTGA 1 cut(s) 526
AvaII GGWCC 1 cut(s) 529
BaeGI GKGCMC 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 719
Bbv12I GWGCWC 1 cut(s) 17
BccI CCATC 3 cut(s) 70, 551, 574
BcgI CGANNNNNNTGC 2 cut(s) 404, 438
BciT130I CCWGG 2 cut(s) 612, 779
BciVI GTATCC 2 cut(s) 106, 618
BfmI CTRYAG 1 cut(s) 244
BfuI GTATCC 2 cut(s) 106, 618
BglII AGATCT 1 cut(s) 195
Bme1390I CCNGG 2 cut(s) 612, 779
Bme18I GGWCC 1 cut(s) 529
BmgT120I GGNCC 1 cut(s) 529
BmrFI CCNGG 2 cut(s) 612, 779
BmsI GCATC 2 cut(s) 412, 736
BpiI GAAGAC 1 cut(s) 719
Bsa29I ATCGAT 1 cut(s) 84
BsaBI GATNNNNATC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 777
Bse1I ACTGG 1 cut(s) 608
Bse3DI GCAATG 1 cut(s) 378
Bse8I GATNNNNATC 1 cut(s) 80
BseBI CCWGG 2 cut(s) 612, 779
BseCI ATCGAT 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 777
BseGI GGATG 3 cut(s) 562, 745, 871
BseJI GATNNNNATC 1 cut(s) 80
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 1 cut(s) 648
BseNI ACTGG 1 cut(s) 608
BseRI GAGGAG 1 cut(s) 576
BseSI GKGCMC 1 cut(s) 17
BshVI ATCGAT 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 17
BslFI GGGAC 2 cut(s) 335, 604
BsmFI GGGAC 2 cut(s) 335, 604
Bsp1286I GDGCHC 1 cut(s) 17
Bsp1407I TGTACA 1 cut(s) 569
Bsp143I GATC 5 cut(s) 34, 195, 415, 466, 653
BspACI CCGC 1 cut(s) 125
BspCNI CTCAG 1 cut(s) 649
BspDI ATCGAT 1 cut(s) 84
BspPI GGATC 2 cut(s) 42, 661
BsrDI GCAATG 1 cut(s) 378
BsrGI TGTACA 1 cut(s) 569
BsrI ACTGG 1 cut(s) 608
BssECI CCNNGG 1 cut(s) 777
BssMI GATC 5 cut(s) 34, 195, 415, 466, 653
Bst2UI CCWGG 2 cut(s) 612, 779
Bst6I CTCTTC 1 cut(s) 186
BstAPI GCANNNNNTGC 1 cut(s) 377
BstAUI TGTACA 1 cut(s) 569
BstDEI CTNAG 3 cut(s) 6, 657, 803
BstF5I GGATG 3 cut(s) 562, 745, 871
BstKTI GATC 5 cut(s) 37, 198, 418, 469, 656
BstMBI GATC 5 cut(s) 34, 195, 415, 466, 653
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstNI CCWGG 2 cut(s) 612, 779
BstNSI RCATGY 1 cut(s) 684
BstSCI CCNGG 2 cut(s) 610, 777
BstSFI CTRYAG 1 cut(s) 244
BstSLI GKGCMC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 719
BstX2I RGATCY 2 cut(s) 195, 653
BstYI RGATCY 2 cut(s) 195, 653
Bsu15I ATCGAT 1 cut(s) 84
BsuI GTATCC 2 cut(s) 106, 618
BsuTUI ATCGAT 1 cut(s) 84
BtsCI GGATG 3 cut(s) 562, 745, 871
Cfr13I GGNCC 1 cut(s) 529
ClaI ATCGAT 1 cut(s) 84
Csp6I GTAC 1 cut(s) 570
CviAII CATG 6 cut(s) 47, 106, 170, 453, 493, 681
CviJI RGCY 7 cut(s) 10, 62, 215, 227, 338, 484, 550
CviKI_1 RGCY 7 cut(s) 10, 62, 215, 227, 338, 484, 550
CviQI GTAC 1 cut(s) 570
DdeI CTNAG 3 cut(s) 6, 657, 803
DpnI GATC 5 cut(s) 36, 197, 417, 468, 655
DpnII GATC 5 cut(s) 34, 195, 415, 466, 653
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco32I GATATC 2 cut(s) 445, 814
Eco47I GGWCC 1 cut(s) 529
Eco57I CTGAAG 2 cut(s) 458, 572
EcoO109I RGGNCCY 1 cut(s) 529
EcoRI GAATTC 2 cut(s) 431, 488
EcoRII CCWGG 2 cut(s) 610, 777
EcoRV GATATC 2 cut(s) 445, 814
FaeI CATG 6 cut(s) 50, 109, 173, 456, 496, 684
FaqI GGGAC 2 cut(s) 335, 604
FatI CATG 6 cut(s) 46, 105, 169, 452, 492, 680
FokI GGATG 2 cut(s) 569, 752
Hin1II CATG 6 cut(s) 50, 109, 173, 456, 496, 684
HinfI GANTC 4 cut(s) 166, 477, 500, 715
HphI GGTGA 1 cut(s) 526
Hpy166II GTNNAC 2 cut(s) 15, 570
Hpy188I TCNGA 4 cut(s) 140, 312, 658, 723
Hpy188III TCNNGA 5 cut(s) 67, 419, 428, 436, 577
Hpy8I GTNNAC 2 cut(s) 15, 570
HpyAV CCTTC 8 cut(s) 103, 199, 324, 328, 433, 547, 755, 848
HpyCH4V TGCA 4 cut(s) 15, 148, 407, 788
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 3 cut(s) 6, 657, 803
Hsp92II CATG 6 cut(s) 50, 109, 173, 456, 496, 684
Kzo9I GATC 5 cut(s) 34, 195, 415, 466, 653
LweI GCATC 2 cut(s) 412, 736
MaeIII GTNAC 2 cut(s) 239, 364
MalI GATC 5 cut(s) 36, 197, 417, 468, 655
MboI GATC 5 cut(s) 34, 195, 415, 466, 653
MboII GAAGA 7 cut(s) 164, 203, 495, 685, 724, 755, 863
MflI RGATCY 2 cut(s) 195, 653
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 5 cut(s) 143, 390, 431, 488, 841
MlyI GAGTC 1 cut(s) 709
MnlI CCTC 5 cut(s) 363, 520, 542, 554, 652
MseI TTAA 2 cut(s) 342, 840
MspA1I CMGCKG 1 cut(s) 484
MspR9I CCNGG 2 cut(s) 612, 779
MvaI CCWGG 2 cut(s) 612, 779
MwoI GCNNNNNNNGC 1 cut(s) 377
NdeII GATC 5 cut(s) 34, 195, 415, 466, 653
NlaIII CATG 6 cut(s) 50, 109, 173, 456, 496, 684
NmuCI GTSAC 1 cut(s) 239
NspI RCATGY 1 cut(s) 684
PciI ACATGT 1 cut(s) 680
PfeI GAWTC 3 cut(s) 166, 477, 500
PleI GAGTC 1 cut(s) 709
PpsI GAGTC 1 cut(s) 709
PpuMI RGGWCCY 1 cut(s) 529
PscI ACATGT 1 cut(s) 680
Psp5II RGGWCCY 1 cut(s) 529
Psp6I CCWGG 2 cut(s) 610, 777
PspGI CCWGG 2 cut(s) 610, 777
PspPI GGNCC 1 cut(s) 529
PspPPI RGGWCCY 1 cut(s) 529
PsuI RGATCY 2 cut(s) 195, 653
PvuII CAGCTG 1 cut(s) 484
RsaI GTAC 1 cut(s) 571
RsaNI GTAC 1 cut(s) 570
SaqAI TTAA 2 cut(s) 342, 840
Sau3AI GATC 5 cut(s) 34, 195, 415, 466, 653
Sau96I GGNCC 1 cut(s) 529
SchI GAGTC 1 cut(s) 709
ScrFI CCNGG 2 cut(s) 612, 779
SduI GDGCHC 1 cut(s) 17
SetI ASST 9 cut(s) 217, 229, 239, 486, 531, 552, 623, 663, 859
SfaNI GCATC 2 cut(s) 412, 736
SfcI CTRYAG 1 cut(s) 244
SinI GGWCC 1 cut(s) 529
Sse9I AATT 5 cut(s) 143, 390, 431, 488, 841
SsiI CCGC 1 cut(s) 125
SspI AATATT 1 cut(s) 769
StyD4I CCNGG 2 cut(s) 610, 777
TaqI TCGA 3 cut(s) 84, 429, 759
TasI AATT 5 cut(s) 143, 390, 431, 488, 841
TatI WGTACW 1 cut(s) 569
TfiI GAWTC 3 cut(s) 166, 477, 500
Tru1I TTAA 2 cut(s) 342, 840
Tru9I TTAA 2 cut(s) 342, 840
TseFI GTSAC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 8 cut(s) 35, 122, 158, 218, 336, 481, 756, 864
TspGWI ACGGA 1 cut(s) 608
VneI GTGCAC 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 529
XapI RAATTY 2 cut(s) 431, 488
XceI RCATGY 1 cut(s) 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.