Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0004521

Physical Location & Seq

Genomic Coordinates Forward (+)

756792 .. 757850

Gene Structure 1059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g01300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGTTAGAGACCGGCATGGCTCAGGTGCAATCTGCAGCCGAGGAAATTAAAGGTAATCTCCGTTCAATGATGCGGAGGCGCTCCATCTCATCCACATTATCTTGGTCTTCTTCTCATAAAAGTCTACGTGAATCTAGCTTAACAAGTTCTTCAACACGGGCTCGTTTAGATATTAGTTTCCTCGATGACAATGGAACTCCAAGCCATTCGTTAACACTAGGAAAGCTATATGCTTTGGAGGAAAACCTCTACAGAGAGCAGAAGGTAATAGAGGAAGCCGAGAGAATTTATGACCGAAAATCGGAAGAACTAGACACCAAAATATACGAGATTGAAATCTTGTATTGCAGATTTTTGATGGCCAAAAAGAATGCTAAATCAATCTCCGAAACAATTCGAAAAACGAGAGATGAAGAGCTGCAACCACAACTCGTTAAGTTGTTAAAAAGCATAATGAGCAACTCGAAGAAAATGTCTGAATTTCTGGAAACCCAAAAGAGAATAATGTCCGAAGTGAGCTTTCTCAAATGTCCGTCCAATAGAACGCTCTGCAATGACTCGAACCAGGTTGCTACTCCGAAGCTCGAAAAGGAACTTCTAAATTGGCGTACACGCTTTGCTTCGTATGTTTATTCACAAAAGGCGTACGTCAAAGCTCTAGACCGCTGGCTAGCTAAGTTGGATGATGTTGAAACTGAAAGCAAGTTAAAATCAAAGGGGGTTAACCTGTCATCGCTTGCAATCTGTCGGCATTGGTCAAATGGCCTAGATAAGCTGCCATATCAAGCAGTGACTTGTGCCATCAAAAGCTTCGTGAAAGATGTCCGGGCCCTGAGGGATCAACAACATAAGGAGCGCCGACAAAAGAGGGAGGTTGACAAGCTTGCCAGAAGACTCGGGAGGGAGATTTTTTTGGCAGGAAACAGACCTAAAGGAACAGATGCGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

317

Amino Acids

36.49

Weight (kDa)

9.58

Isoelectric Point (pI)

52.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11140 FvH4_3g42260
malus_domestica	MD02G1014200.v1.1
prunus_persica	Prupe.7G172100_v2.0.a1 Prupe.7G174400_v2.0.a1 Prupe.7G174500_v2.0.a1
pyrus_communis	pycom02g01300
rosa_chinensis	RchiOBHm_Chr2g0098421
rosa_laevigata	RLG00000016798 RLG00000036577 RLG00000036578 RLG00000036581
rosa_multiflora	Rmu_sc0003437.1_g000007 Rmu_ssc0000196.1_g000020
rosa_roxburghii	Rroxscaffold_1G00005980
rosa_rugosa	Rorug02G0073100 Rorug05G0440800.1 Rorug05G0441000 Rorug05G0441100
rosa_samantha	Rh2AG120400 Rh2BG123200 Rh2CG124800 Rh2DG124900 Rh5AG497900 Rh5BG518700 Rh5BG518800 Rh5CG542400 Rh5CG542500 Rh5DG530200 Rh5DG530400
rosa_wichuraiana	Rw2G009420 Rw5G046150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	124
AciI	CCGC	3 cut(s)	73, 664, 944
AclWI	GGATC	1 cut(s)	846
AcoI	YGGCCR	1 cut(s)	360
AcsI	RAATTY	2 cut(s)	285, 479
AfaI	GTAC	2 cut(s)	610, 647
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	4 cut(s)	66, 153, 335, 692
AjnI	CCWGG	1 cut(s)	564
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	1 cut(s)	846
Ama87I	CYCGRG	1 cut(s)	896
AoxI	GGCC	3 cut(s)	360, 763, 828
ApaI	GGGCCC	1 cut(s)	832
ApeKI	GCWGC	3 cut(s)	35, 418, 775
ApoI	RAATTY	2 cut(s)	285, 479
ArsI	GACNNNNNNTTYG	2 cut(s)	458, 490
Asp700I	GAANNNNTTC	1 cut(s)	393
AspLEI	GCGC	2 cut(s)	81, 858
AspS9I	GGNCC	2 cut(s)	828, 829
AsuC2I	CCSGG	1 cut(s)	827
AsuII	TTCGAA	1 cut(s)	397
AsuNHI	GCTAGC	1 cut(s)	670
AvaI	CYCGRG	1 cut(s)	896
AxyI	CCTNAGG	1 cut(s)	833
BaeGI	GKGCMC	1 cut(s)	832
BalI	TGGCCA	1 cut(s)	362
BanII	GRGCYC	2 cut(s)	163, 832
BbsI	GAAGAC	2 cut(s)	99, 898
BbvI	GCAGC	3 cut(s)	47, 405, 762
BccI	CCATC	3 cut(s)	92, 352, 809
BciT130I	CCWGG	1 cut(s)	566
BcnI	CCSGG	1 cut(s)	827
BcoDI	GTCTC	1 cut(s)	2
BfaI	CTAG	6 cut(s)	135, 218, 311, 659, 671, 767
BfmI	CTRYAG	2 cut(s)	33, 250
BfoI	RGCGCY	2 cut(s)	82, 859
BisI	GCNGC	3 cut(s)	36, 419, 776
BlsI	GCNGC	3 cut(s)	37, 420, 777
Bme1390I	CCNGG	2 cut(s)	566, 827
BmeT110I	CYCGRG	1 cut(s)	896
BmgT120I	GGNCC	2 cut(s)	828, 829
BmiI	GGNNCC	1 cut(s)	830
BmrFI	CCNGG	2 cut(s)	566, 827
BmsI	GCATC	2 cut(s)	60, 931
BmtI	GCTAGC	1 cut(s)	674
BpiI	GAAGAC	2 cut(s)	99, 898
Bpu10I	CCTNAGC	1 cut(s)	21
Bpu14I	TTCGAA	1 cut(s)	397
BpuMI	CCSGG	1 cut(s)	827
BsaAI	YACGTR	1 cut(s)	128
BsaBI	GATNNNNATC	1 cut(s)	335
BsaI	GGTCTC	1 cut(s)	2
BsaJI	CCNNGG	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse118I	RCCGGY	1 cut(s)	11
Bse21I	CCTNAGG	1 cut(s)	833
Bse3DI	GCAATG	1 cut(s)	559
Bse8I	GATNNNNATC	1 cut(s)	335
BseBI	CCWGG	1 cut(s)	566
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	2 cut(s)	89, 688
BseJI	GATNNNNATC	1 cut(s)	335
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMI	GCAATG	1 cut(s)	559
BseMII	CTCAG	2 cut(s)	35, 824
BseSI	GKGCMC	1 cut(s)	832
BseXI	GCAGC	3 cut(s)	47, 405, 762
BshFI	GGCC	3 cut(s)	362, 765, 830
BsiHKCI	CYCGRG	1 cut(s)	896
BsiSI	CCGG	2 cut(s)	12, 826
BsiWI	CGTACG	1 cut(s)	645
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	2
BsmI	GAATGC	1 cut(s)	376
BsnI	GGCC	3 cut(s)	362, 765, 830
Bso31I	GGTCTC	1 cut(s)	2
BsoBI	CYCGRG	1 cut(s)	896
Bsp119I	TTCGAA	1 cut(s)	397
Bsp120I	GGGCCC	1 cut(s)	828
Bsp1286I	GDGCHC	2 cut(s)	163, 832
Bsp143I	GATC	1 cut(s)	838
BspACI	CCGC	3 cut(s)	73, 664, 944
BspANI	GGCC	3 cut(s)	362, 765, 830
BspCNI	CTCAG	2 cut(s)	34, 825
BspLI	GGNNCC	1 cut(s)	830
BspMAI	CTGCAG	1 cut(s)	37
BspOI	GCTAGC	1 cut(s)	674
BspPI	GGATC	1 cut(s)	846
BspQI	GCTCTTC	1 cut(s)	408
BspT104I	TTCGAA	1 cut(s)	397
BspTNI	GGTCTC	1 cut(s)	2
BsrDI	GCAATG	1 cut(s)	559
BsrFI	RCCGGY	1 cut(s)	11
BssAI	RCCGGY	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	1 cut(s)	838
Bst2UI	CCWGG	1 cut(s)	566
Bst6I	CTCTTC	1 cut(s)	408
BstBAI	YACGTR	1 cut(s)	128
BstBI	TTCGAA	1 cut(s)	397
BstC8I	GCNNGC	4 cut(s)	668, 672, 738, 885
BstDEI	CTNAG	3 cut(s)	21, 675, 833
BstF5I	GGATG	2 cut(s)	89, 688
BstH2I	RGCGCY	2 cut(s)	82, 859
BstHHI	GCGC	2 cut(s)	81, 858
BstKTI	GATC	1 cut(s)	841
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	1 cut(s)	838
BstMWI	GCNNNNNNNGC	1 cut(s)	456
BstNI	CCWGG	1 cut(s)	566
BstSCI	CCNGG	2 cut(s)	564, 825
BstSFI	CTRYAG	2 cut(s)	33, 250
BstSLI	GKGCMC	1 cut(s)	832
BstV1I	GCAGC	3 cut(s)	47, 405, 762
BstV2I	GAAGAC	2 cut(s)	99, 898
Bsu36I	CCTNAGG	1 cut(s)	833
BsuRI	GGCC	3 cut(s)	362, 765, 830
BtgZI	GCGATG	1 cut(s)	717
BtsCI	GGATG	2 cut(s)	89, 688
BtsI	GCAGTG	1 cut(s)	795
BtsIMutI	CAGTG	1 cut(s)	795
Cac8I	GCNNGC	4 cut(s)	668, 672, 738, 885
CfoI	GCGC	2 cut(s)	81, 858
Cfr10I	RCCGGY	1 cut(s)	11
Cfr13I	GGNCC	2 cut(s)	828, 829
CsiI	ACCWGGT	1 cut(s)	564
Csp6I	GTAC	2 cut(s)	609, 646
CviAII	CATG	1 cut(s)	16
CviQI	GTAC	2 cut(s)	609, 646
DdeI	CTNAG	3 cut(s)	21, 675, 833
DpnI	GATC	1 cut(s)	840
DpnII	GATC	1 cut(s)	838
EaeI	YGGCCR	1 cut(s)	360
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Eco24I	GRGCYC	2 cut(s)	163, 832
Eco31I	GGTCTC	1 cut(s)	2
Eco81I	CCTNAGG	1 cut(s)	833
Eco88I	CYCGRG	1 cut(s)	896
EcoO109I	RGGNCCY	1 cut(s)	829
EcoRII	CCWGG	1 cut(s)	564
EcoT38I	GRGCYC	2 cut(s)	163, 832
FaeI	CATG	1 cut(s)	19
FatI	CATG	1 cut(s)	15
FblI	GTMKAC	1 cut(s)	124
Fnu4HI	GCNGC	3 cut(s)	36, 419, 776
FokI	GGATG	2 cut(s)	76, 695
FriOI	GRGCYC	2 cut(s)	163, 832
Fsp4HI	GCNGC	3 cut(s)	36, 419, 776
FspBI	CTAG	6 cut(s)	135, 218, 311, 659, 671, 767
GlaI	GCGC	2 cut(s)	80, 857
GluI	GCNGC	3 cut(s)	36, 419, 776
HaeII	RGCGCY	2 cut(s)	82, 859
HaeIII	GGCC	3 cut(s)	362, 765, 830
HapII	CCGG	2 cut(s)	12, 826
HhaI	GCGC	2 cut(s)	81, 858
Hin1II	CATG	1 cut(s)	19
Hin6I	GCGC	2 cut(s)	79, 856
HinP1I	GCGC	2 cut(s)	79, 856
HincII	GTYRAC	3 cut(s)	213, 724, 877
HindII	GTYRAC	3 cut(s)	213, 724, 877
HindIII	AAGCTT	2 cut(s)	808, 881
HinfI	GANTC	3 cut(s)	131, 557, 894
HpaI	GTTAAC	2 cut(s)	213, 724
HpaII	CCGG	2 cut(s)	12, 826
Hpy166II	GTNNAC	5 cut(s)	125, 213, 611, 724, 877
Hpy188I	TCNGA	5 cut(s)	304, 388, 478, 511, 579
Hpy188III	TCNNGA	4 cut(s)	485, 659, 814, 898
Hpy8I	GTNNAC	5 cut(s)	125, 213, 611, 724, 877
HpyAV	CCTTC	1 cut(s)	256
HpyCH4IV	ACGT	2 cut(s)	127, 648
HpyCH4V	TGCA	6 cut(s)	28, 35, 348, 421, 552, 740
HpyF10VI	GCNNNNNNNGC	1 cut(s)	456
HpyF3I	CTNAG	3 cut(s)	21, 675, 833
HpySE526I	ACGT	2 cut(s)	127, 648
Hsp92II	CATG	1 cut(s)	19
HspAI	GCGC	2 cut(s)	79, 856
KspAI	GTTAAC	2 cut(s)	213, 724
Kzo9I	GATC	1 cut(s)	838
LguI	GCTCTTC	1 cut(s)	408
LmnI	GCTCC	2 cut(s)	86, 853
Lsp1109I	GCAGC	3 cut(s)	47, 405, 762
LweI	GCATC	2 cut(s)	60, 931
MabI	ACCWGGT	1 cut(s)	564
MaeI	CTAG	6 cut(s)	135, 218, 311, 659, 671, 767
MaeII	ACGT	2 cut(s)	127, 648
MaeIII	GTNAC	1 cut(s)	790
MalI	GATC	1 cut(s)	840
MboI	GATC	1 cut(s)	838
MboII	GAAGA	7 cut(s)	99, 102, 141, 317, 425, 478, 903
MhlI	GDGCHC	2 cut(s)	163, 832
MlsI	TGGCCA	1 cut(s)	362
MluCI	AATT	5 cut(s)	45, 285, 393, 479, 601
MluNI	TGGCCA	1 cut(s)	362
MlyI	GAGTC	2 cut(s)	551, 888
MmeI	TCCRAC	1 cut(s)	660
Mox20I	TGGCCA	1 cut(s)	362
MroXI	GAANNNNTTC	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	362
MseI	TTAA	7 cut(s)	48, 140, 212, 435, 443, 707, 723
Msp20I	TGGCCA	1 cut(s)	362
MspA1I	CMGCKG	1 cut(s)	666
MspI	CCGG	2 cut(s)	12, 826
MspR9I	CCNGG	2 cut(s)	566, 827
Mva1269I	GAATGC	1 cut(s)	376
MvaI	CCWGG	1 cut(s)	566
MwoI	GCNNNNNNNGC	1 cut(s)	456
NciI	CCSGG	1 cut(s)	827
NdeII	GATC	1 cut(s)	838
NheI	GCTAGC	1 cut(s)	670
NlaIII	CATG	1 cut(s)	19
NlaIV	GGNNCC	1 cut(s)	830
NmeAIII	GCCGAG	2 cut(s)	64, 304
NmuCI	GTSAC	1 cut(s)	790
NspV	TTCGAA	1 cut(s)	397
PciSI	GCTCTTC	1 cut(s)	408
PctI	GAATGC	1 cut(s)	376
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	131
Pfl23II	CGTACG	1 cut(s)	645
PkrI	GCNGC	3 cut(s)	37, 420, 777
PleI	GAGTC	2 cut(s)	551, 888
PpsI	GAGTC	2 cut(s)	551, 888
Ppu21I	YACGTR	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	564
PspGI	CCWGG	1 cut(s)	564
PspLI	CGTACG	1 cut(s)	645
PspN4I	GGNNCC	1 cut(s)	830
PspOMI	GGGCCC	1 cut(s)	828
PspPI	GGNCC	2 cut(s)	828, 829
PsrI	GAACNNNNNNTAC	2 cut(s)	46, 78
PstI	CTGCAG	1 cut(s)	37
RsaI	GTAC	2 cut(s)	610, 647
RsaNI	GTAC	2 cut(s)	609, 646
SapI	GCTCTTC	1 cut(s)	408
SaqAI	TTAA	7 cut(s)	48, 140, 212, 435, 443, 707, 723
SatI	GCNGC	3 cut(s)	36, 419, 776
Sau3AI	GATC	1 cut(s)	838
Sau96I	GGNCC	2 cut(s)	828, 829
SchI	GAGTC	2 cut(s)	551, 888
ScrFI	CCNGG	2 cut(s)	566, 827
SduI	GDGCHC	2 cut(s)	163, 832
SexAI	ACCWGGT	1 cut(s)	564
SfaNI	GCATC	2 cut(s)	60, 931
SfcI	CTRYAG	2 cut(s)	33, 250
SfuI	TTCGAA	1 cut(s)	397
Sse9I	AATT	5 cut(s)	45, 285, 393, 479, 601
SsiI	CCGC	3 cut(s)	73, 664, 944
SspMI	CTAG	6 cut(s)	135, 218, 311, 659, 671, 767
StyD4I	CCNGG	2 cut(s)	564, 825
TaiI	ACGT	2 cut(s)	130, 651
TaqI	TCGA	5 cut(s)	183, 397, 464, 560, 585
TaqII	GACCGA	1 cut(s)	309
TasI	AATT	5 cut(s)	45, 285, 393, 479, 601
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	7 cut(s)	48, 140, 212, 435, 443, 707, 723
Tru9I	TTAA	7 cut(s)	48, 140, 212, 435, 443, 707, 723
TscAI	CASTG	1 cut(s)	795
TseFI	GTSAC	1 cut(s)	790
TseI	GCWGC	3 cut(s)	35, 418, 775
Tsp45I	GTSAC	1 cut(s)	790
TspDTI	ATGAA	1 cut(s)	426
TspGWI	ACGGA	2 cut(s)	50, 522
TspRI	CASTG	1 cut(s)	795
XapI	RAATTY	2 cut(s)	285, 479
XbaI	TCTAGA	1 cut(s)	658
XmiI	GTMKAC	1 cut(s)	124
XmnI	GAANNNNTTC	1 cut(s)	393
XspI	CTAG	6 cut(s)	135, 218, 311, 659, 671, 767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.