Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004521

Physical Location & Seq

Genomic Coordinates Reverse (-)

82043213 .. 82043824

Gene Structure 612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG518800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCACCGAGAAGCTACTAAAACGCTAAAAGAAAAGCTTCACAATTGGTGCCCTAGCTTTGCTTTATATATATCCCTACAAAGAGCATACGTTGAAGTTCTTTATTGTTGGCTCTCAAAGAATAGCCCACCAACATTAGTTAGCGACAATAATGGTGATTGGTTAGGTTTCCTAAAAATTCTGGAAAGTACTACAAAGACGGTGACTAGTGAGATGAATAGGTTTCGGAAAGATGTTGAAGCCCTGTTAGCTCAACAGAGGAAGGAGCATTACAAAAACATGGAGATCAAGCGACTTGAGAATATAGTCAAGCATAGAGAGGAACGGATTTCGGAACTTGAGAATGAAGTAGAAAATATTTCTCATGAGGGTGATGGAGCAGAGATCCAGAGATTGAAGGGCAAGATTGAGGAGTTAAAGGGTGAGATTGAGAAATTTAATGCCGAGATAGAGGAAAATAATGAGAAACTTCAATGTAGAATGAAGAAGACGCAGCAAATGGTGAATCAATTTCAGACCGGGTTCTCTAAAGTTTTCGAAACTCTGGCAGAGTTTTCACGCAAACAGAAATCTACACTGAGCTTATCAAATGCCTGCGCACGTAAACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

203

Amino Acids

23.81

Weight (kDa)

8.58

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF632	PF04782	2 - 42	1.4e-08	Protein of unknown function (DUF632)
DUF2730	PF10805	81 - 153	4.5e-06	Protein of unknown function (DUF2730)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11140 FvH4_3g42260
malus_domestica	MD02G1014200.v1.1
prunus_persica	Prupe.7G172100_v2.0.a1 Prupe.7G174400_v2.0.a1 Prupe.7G174500_v2.0.a1
pyrus_communis	pycom02g01300
rosa_chinensis	RchiOBHm_Chr2g0098421
rosa_laevigata	RLG00000016798 RLG00000036577 RLG00000036578 RLG00000036581
rosa_multiflora	Rmu_sc0003437.1_g000007 Rmu_ssc0000196.1_g000020
rosa_roxburghii	Rroxscaffold_1G00005980
rosa_rugosa	Rorug02G0073100 Rorug05G0440800.1 Rorug05G0441000 Rorug05G0441100
rosa_samantha	Rh2AG120400 Rh2BG123200 Rh2CG124800 Rh2DG124900 Rh5AG497900 Rh5BG518700 Rh5BG518800 Rh5CG542400 Rh5CG542500 Rh5DG530200 Rh5DG530400
rosa_wichuraiana	Rw2G009420 Rw5G046150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	598
AccB1I	GGYRCC	1 cut(s)	48
AclWI	GGATC	1 cut(s)	379
AcsI	RAATTY	2 cut(s)	177, 434
AfaI	GTAC	1 cut(s)	190
AgsI	TTSAA	4 cut(s)	95, 239, 397, 473
AhlI	ACTAGT	1 cut(s)	206
AluBI	AGCT	5 cut(s)	14, 37, 57, 251, 582
AluI	AGCT	5 cut(s)	14, 37, 57, 251, 582
AlwI	GGATC	1 cut(s)	379
ApeKI	GCWGC	1 cut(s)	493
ApoI	RAATTY	2 cut(s)	177, 434
Asp700I	GAANNNNTTC	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	599
AsuC2I	CCSGG	1 cut(s)	520
AsuHPI	GGTGA	5 cut(s)	167, 214, 383, 434, 514
AsuII	TTCGAA	1 cut(s)	537
BaeGI	GKGCMC	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	48
BarI	GAAGNNNNNNTAC	2 cut(s)	254, 286
BbsI	GAAGAC	1 cut(s)	494
BbvI	GCAGC	1 cut(s)	505
BccI	CCATC	1 cut(s)	368
BcnI	CCSGG	1 cut(s)	520
BcuI	ACTAGT	1 cut(s)	206
BfaI	CTAG	2 cut(s)	54, 207
BisI	GCNGC	1 cut(s)	494
BlsI	GCNGC	1 cut(s)	495
BmcAI	AGTACT	1 cut(s)	190
Bme1390I	CCNGG	1 cut(s)	520
BmiI	GGNNCC	1 cut(s)	50
BmrFI	CCNGG	1 cut(s)	520
BpiI	GAAGAC	1 cut(s)	494
Bpu14I	TTCGAA	1 cut(s)	537
BpuEI	CTTGAG	2 cut(s)	317, 359
BpuMI	CCSGG	1 cut(s)	520
BsaAI	YACGTR	1 cut(s)	602
BseMII	CTCAG	1 cut(s)	569
BseRI	GAGGAG	1 cut(s)	425
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	505
BshNI	GGYRCC	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	519
Bsp119I	TTCGAA	1 cut(s)	537
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	2 cut(s)	285, 384
BspCNI	CTCAG	1 cut(s)	570
BspHI	TCATGA	1 cut(s)	364
BspLI	GGNNCC	1 cut(s)	50
BspPI	GGATC	1 cut(s)	379
BspT104I	TTCGAA	1 cut(s)	537
BspT107I	GGYRCC	1 cut(s)	48
BssMI	GATC	2 cut(s)	285, 384
Bst4CI	ACNGT	2 cut(s)	202, 609
BstBAI	YACGTR	1 cut(s)	602
BstBI	TTCGAA	1 cut(s)	537
BstC8I	GCNNGC	1 cut(s)	595
BstDEI	CTNAG	1 cut(s)	578
BstHHI	GCGC	1 cut(s)	599
BstKTI	GATC	2 cut(s)	288, 387
BstMBI	GATC	2 cut(s)	285, 384
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	518
BstSLI	GKGCMC	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	505
BstV2I	GAAGAC	1 cut(s)	494
BstX2I	RGATCY	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	384
BtsIMutI	CAGTG	1 cut(s)	575
Cac8I	GCNNGC	1 cut(s)	595
CciI	TCATGA	1 cut(s)	364
CfoI	GCGC	1 cut(s)	599
CseI	GACGC	1 cut(s)	499
Csp6I	GTAC	1 cut(s)	189
CviAII	CATG	2 cut(s)	280, 365
CviJI	RGCY	8 cut(s)	14, 37, 57, 112, 126, 242, 251, 582
CviKI_1	RGCY	8 cut(s)	14, 37, 57, 112, 126, 242, 251, 582
CviQI	GTAC	1 cut(s)	189
DdeI	CTNAG	1 cut(s)	578
DpnI	GATC	2 cut(s)	287, 386
DpnII	GATC	2 cut(s)	285, 384
FaeI	CATG	2 cut(s)	283, 368
FaiI	YATR	8 cut(s)	67, 69, 71, 88, 281, 305, 315, 366
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FatI	CATG	2 cut(s)	279, 364
Fnu4HI	GCNGC	1 cut(s)	494
Fsp4HI	GCNGC	1 cut(s)	494
FspBI	CTAG	2 cut(s)	54, 207
FspI	TGCGCA	1 cut(s)	598
GlaI	GCGC	1 cut(s)	598
GluI	GCNGC	1 cut(s)	494
HapII	CCGG	1 cut(s)	519
HgaI	GACGC	1 cut(s)	499
HhaI	GCGC	1 cut(s)	599
Hin1II	CATG	2 cut(s)	283, 368
Hin6I	GCGC	1 cut(s)	597
HinP1I	GCGC	1 cut(s)	597
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	1 cut(s)	505
HpaII	CCGG	1 cut(s)	519
HphI	GGTGA	5 cut(s)	167, 214, 383, 434, 514
Hpy166II	GTNNAC	1 cut(s)	605
Hpy188I	TCNGA	3 cut(s)	228, 334, 516
Hpy188III	TCNNGA	3 cut(s)	182, 365, 388
Hpy8I	GTNNAC	1 cut(s)	605
HpyAV	CCTTC	2 cut(s)	256, 391
HpyCH4III	ACNGT	2 cut(s)	202, 609
HpyCH4IV	ACGT	2 cut(s)	90, 601
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	1 cut(s)	578
HpySE526I	ACGT	2 cut(s)	90, 601
Hsp92II	CATG	2 cut(s)	283, 368
HspAI	GCGC	1 cut(s)	597
Kzo9I	GATC	2 cut(s)	285, 384
LmnI	GCTCC	2 cut(s)	265, 377
LpnPI	CCDG	6 cut(s)	167, 257, 401, 530, 532, 607
Lsp1109I	GCAGC	1 cut(s)	505
MaeI	CTAG	2 cut(s)	54, 207
MaeII	ACGT	2 cut(s)	90, 601
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	2 cut(s)	287, 386
MboI	GATC	2 cut(s)	285, 384
MboII	GAAGA	2 cut(s)	496, 499
MfeI	CAATTG	1 cut(s)	43
MflI	RGATCY	1 cut(s)	384
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	4 cut(s)	43, 177, 434, 509
MnlI	CCTC	5 cut(s)	252, 313, 361, 403, 445
MroXI	GAANNNNTTC	1 cut(s)	36
MseI	TTAA	2 cut(s)	416, 438
MslI	CAYNNNNRTG	1 cut(s)	369
MspI	CCGG	1 cut(s)	519
MspR9I	CCNGG	1 cut(s)	520
MunI	CAATTG	1 cut(s)	43
MwoI	GCNNNNNNNGC	1 cut(s)	248
NciI	CCSGG	1 cut(s)	520
NdeII	GATC	2 cut(s)	285, 384
NlaIII	CATG	2 cut(s)	283, 368
NlaIV	GGNNCC	1 cut(s)	50
NmeAIII	GCCGAG	1 cut(s)	469
NmuCI	GTSAC	1 cut(s)	202
NsbI	TGCGCA	1 cut(s)	598
NspV	TTCGAA	1 cut(s)	537
PagI	TCATGA	1 cut(s)	364
PdmI	GAANNNNTTC	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	505
PkrI	GCNGC	1 cut(s)	495
Ppu21I	YACGTR	1 cut(s)	602
PspN4I	GGNNCC	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	384
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	369
SaqAI	TTAA	2 cut(s)	416, 438
SatI	GCNGC	1 cut(s)	494
Sau3AI	GATC	2 cut(s)	285, 384
ScaI	AGTACT	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	520
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	9 cut(s)	16, 39, 59, 93, 169, 224, 253, 584, 604
SfuI	TTCGAA	1 cut(s)	537
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	2 cut(s)	296, 338
SmoI	CTYRAG	2 cut(s)	296, 338
SpeI	ACTAGT	1 cut(s)	206
Sse9I	AATT	4 cut(s)	43, 177, 434, 509
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	2 cut(s)	54, 207
StyD4I	CCNGG	1 cut(s)	518
TaaI	ACNGT	2 cut(s)	202, 609
TaiI	ACGT	2 cut(s)	93, 604
TaqI	TCGA	1 cut(s)	537
TasI	AATT	4 cut(s)	43, 177, 434, 509
TatI	WGTACW	1 cut(s)	188
TfiI	GAWTC	1 cut(s)	505
Tru1I	TTAA	2 cut(s)	416, 438
Tru9I	TTAA	2 cut(s)	416, 438
TscAI	CASTG	1 cut(s)	582
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	1 cut(s)	493
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	3 cut(s)	230, 360, 497
TspGWI	ACGGA	1 cut(s)	340
TspRI	CASTG	1 cut(s)	582
XapI	RAATTY	2 cut(s)	177, 434
XmnI	GAANNNNTTC	1 cut(s)	36
XspI	CTAG	2 cut(s)	54, 207
ZrmI	AGTACT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.