Prupe.8G169900_v2.0.a1

DDB1- and CUL4-associated factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
17456892 .. 17460833
3942 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G169900.3

Sequence Viewer

Length: 1485 bp
ATGAACAAGAGGCCACGAACAAGCATCGGCAAGGCTGTCGTCAATGTTTGGCAGCGCGAGGTCGGCGAGCTCTCGGCCAGAAATTTTACCCACCGTGTTGGTGGCTCTGAGGATCTTGTGCTTCGACTTGAACTCTACAGGAAGCTCGAGAAGCACCGAGGATGTGTGAACACTATAAGCTTCAATGCGGCTGGTGATATTCTGGTTTCAGGCTCTGATGACAGGCGGGTCATCCTATGGAATTGGGAAACTGGGAAAGTTCAGCTTTCATTCCATTCAGGTCATAATAACAATATTTTCCAAGCAAAGATCATGCCTTATACCGATGATAGAAGCATTATCACCTGTGCTGCTGATGGGCAGGTGAGACATGCTCAAATTTCAGATAAAGGACAAGTGAAAACTTCATTGTTGGGCAAACATCTGGGGCGCTCTCATAAGTTGGCAATTGAGCCTGGGAGCCCTCACATTTTTTACACCTGTGGTGAAGATGGATTGGTGCAACATTTTGATCTGAGGACTGGGGCTGCCACAGAACTTGTCACATGCCAACCTCTTGATGGTAGAAGGAGTCACATGCCAGCCATCCATCTAAATGCAATTGCAATTGACCCAAGAAACCCAAATTTCTTTGCAGTGGCAGGTTCTGACGAATATACTCGACTTTTTGATATCCGCAAGTATAAATGGGATGGATCATCTGATTTCGGCCAACCTGCAAACTTCTTTTGCCCATCACACTTGATTGGTGATGGGCGAGTTGGAATTACTGGATTGGCCTTCTCAGAACAGAGCGAACTTCTTGTCTCATACAATGATGAGAACATCTATCTTTTTGAACGAGATATGGGGTTGGGACCTAATCCAGTTACAACCTCTCCAGTTTCTATGGGCAGTGATGCAAGTGAAATGAGTACTGATCATCAGAGTGAAGCATCTCCATCAACCATGCCTATTGATGAAAGTTCTGCTCCTCAAGTTTACAAGGGTCATAGGAACTGTGAGACAGTGAAAGGCGTGAACTTCTTTGGTCCTAAATGTGAGTATGTTGTGAGCGGGTCTGACTGTGCGCGGATATTCATATGGAAGAAAAAGGGTGGGGAGCTGATTCGTGTTATGGAAGCAGATAAGCATGTGGTAAATTGCATCGAGTCTCATCCTCACACCACAGTTCTTGCAAGCAGCGGAATCGATAGTGACATCAAGATATGGACTCCAAAGGCCAATGAGAGAGCTACTCTGCCTCAGAACATCGAGAAGAAGAAACCCAGGGCTAGGGGATGGATGTACCGCCTATCCTCACCCGAGGACTTGATGTTGCAACTGTTTTCATTGCAAAGGCAGAGGATAAGCCCAGAGCGCGACGGCGAGAACTCAAATGATGGTCAGGATCTTCTAGAGCTAATAATGGCATTCCAGCGCAACTCTGATGATTCTTCAGAGGACGGAGGAGACACCTCCAGTCAGGATGATTTGTTTTGTTGA

Protein Analysis

495

Amino Acids

55.01

Weight (kDa)

6.03

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 352
AasI GACNNNNNNGTC 1 cut(s) 227
Acc36I ACCTGC 3 cut(s) 352, 632, 724
AccBSI CCGCTC 1 cut(s) 1056
AccII CGCG 3 cut(s) 57, 1072, 1362
AciI CCGC 7 cut(s) 188, 226, 676, 1056, 1072, 1185, 1291
AclWI GGATC 3 cut(s) 120, 703, 1398
AcoI YGGCCR 2 cut(s) 75, 709
AcsI RAATTY 3 cut(s) 82, 378, 625
AcuI CTGAAG 1 cut(s) 1422
AfaI GTAC 2 cut(s) 916, 1289
AfiI CCNNNNNNNGG 2 cut(s) 560, 1275
AgsI TTSAA 3 cut(s) 131, 184, 839
AjnI CCWGG 2 cut(s) 454, 1268
AluBI AGCT 7 cut(s) 70, 145, 180, 265, 1105, 1235, 1402
AluI AGCT 7 cut(s) 70, 145, 180, 265, 1105, 1235, 1402
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 5 cut(s) 361, 811, 998, 1158, 1446
AlwI GGATC 3 cut(s) 120, 703, 1398
AlwNI CAGNNNCTG 2 cut(s) 215, 647
Ama87I CYCGRG 2 cut(s) 146, 1304
AoxI GGCC 5 cut(s) 11, 75, 709, 777, 1221
ApeKI GCWGC 4 cut(s) 52, 350, 527, 1182
ApoI RAATTY 3 cut(s) 82, 378, 625
ArsI GACNNNNNNTTYG 2 cut(s) 789, 821
AspLEI GCGC 5 cut(s) 57, 432, 1072, 1362, 1422
AspS9I GGNCC 2 cut(s) 857, 1031
AsuHPI GGTGA 6 cut(s) 206, 334, 376, 497, 761, 1293
AvaI CYCGRG 2 cut(s) 146, 1304
AvaII GGWCC 2 cut(s) 857, 1031
BanII GRGCYC 2 cut(s) 72, 464
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 4 cut(s) 64, 337, 514, 1194
BceAI ACGGC 1 cut(s) 1381
BcgI CGANNNNNNTGC 4 cut(s) 19, 53, 1171, 1205
BciT130I CCWGG 2 cut(s) 456, 1270
BclI TGATCA 1 cut(s) 919
BcoDI GTCTC 5 cut(s) 361, 811, 998, 1158, 1446
BfaI CTAG 2 cut(s) 1275, 1397
BfmI CTRYAG 1 cut(s) 136
BfoI RGCGCY 1 cut(s) 433
BfuAI ACCTGC 3 cut(s) 352, 632, 724
BisI GCNGC 5 cut(s) 53, 189, 351, 528, 1183
BlsI GCNGC 5 cut(s) 54, 190, 352, 529, 1184
BmcAI AGTACT 1 cut(s) 916
Bme1390I CCNGG 2 cut(s) 456, 1270
Bme18I GGWCC 2 cut(s) 857, 1031
BmeT110I CYCGRG 2 cut(s) 146, 1304
BmgT120I GGNCC 2 cut(s) 857, 1031
BmiI GGNNCC 2 cut(s) 461, 858
BmrFI CCNGG 2 cut(s) 456, 1270
BmrI ACTGGG 2 cut(s) 261, 531
BmsI GCATC 4 cut(s) 33, 889, 944, 1155
BmuI ACTGGG 2 cut(s) 261, 531
BplI GAGNNNNNCTC 4 cut(s) 358, 390, 1222, 1254
BpmI CTGGAG 2 cut(s) 864, 1444
BpuEI CTTGAG 1 cut(s) 960
Bsa29I ATCGAT 1 cut(s) 1191
BsaJI CCNNGG 5 cut(s) 157, 455, 1268, 1269, 1305
BsaXI ACNNNNNCTCC 2 cut(s) 862, 892
Bsc4I CCNNNNNNNGG 2 cut(s) 560, 1275
Bse1I ACTGG 6 cut(s) 256, 526, 775, 866, 881, 1461
Bse3DI GCAATG 1 cut(s) 1331
BseBI CCWGG 2 cut(s) 456, 1270
BseCI ATCGAT 1 cut(s) 1191
BseDI CCNNGG 5 cut(s) 157, 455, 1268, 1269, 1305
BseGI GGATG 8 cut(s) 167, 231, 585, 697, 1156, 1286, 1290, 1474
BseLI CCNNNNNNNGG 2 cut(s) 560, 1275
BseMI GCAATG 1 cut(s) 1331
BseMII CTCAG 4 cut(s) 99, 506, 798, 1259
BseNI ACTGG 6 cut(s) 256, 526, 775, 866, 881, 1461
BseRI GAGGAG 2 cut(s) 963, 1464
BseXI GCAGC 4 cut(s) 64, 337, 514, 1194
Bsh1236I CGCG 3 cut(s) 57, 1072, 1362
BshFI GGCC 5 cut(s) 13, 77, 711, 779, 1223
BshVI ATCGAT 1 cut(s) 1191
BsiHKAI GWGCWC 1 cut(s) 72
BsiHKCI CYCGRG 2 cut(s) 146, 1304
BslFI GGGAC 1 cut(s) 870
BslI CCNNNNNNNGG 2 cut(s) 560, 1275
BsmAI GTCTC 5 cut(s) 361, 811, 998, 1158, 1446
BsmFI GGGAC 1 cut(s) 870
BsmI GAATGC 1 cut(s) 1412
BsnI GGCC 5 cut(s) 13, 77, 711, 779, 1223
BsoBI CYCGRG 2 cut(s) 146, 1304
Bsp1286I GDGCHC 2 cut(s) 72, 464
Bsp143I GATC 6 cut(s) 112, 309, 511, 695, 919, 1390
BspACI CCGC 7 cut(s) 188, 226, 676, 1056, 1072, 1185, 1291
BspANI GGCC 5 cut(s) 13, 77, 711, 779, 1223
BspCNI CTCAG 4 cut(s) 100, 507, 797, 1258
BspDI ATCGAT 1 cut(s) 1191
BspFNI CGCG 3 cut(s) 57, 1072, 1362
BspLI GGNNCC 2 cut(s) 461, 858
BspMI ACCTGC 3 cut(s) 352, 632, 724
BspPI GGATC 3 cut(s) 120, 703, 1398
BsrBI CCGCTC 1 cut(s) 1056
BsrDI GCAATG 1 cut(s) 1331
BsrI ACTGG 6 cut(s) 256, 526, 775, 866, 881, 1461
BssECI CCNNGG 5 cut(s) 157, 455, 1268, 1269, 1305
BssMI GATC 6 cut(s) 112, 309, 511, 695, 919, 1390
Bst2UI CCWGG 2 cut(s) 456, 1270
Bst4CI ACNGT 6 cut(s) 95, 1001, 1009, 1067, 1171, 1326
BstC8I GCNNGC 3 cut(s) 68, 582, 1180
BstDEI CTNAG 4 cut(s) 108, 515, 784, 1245
BstF5I GGATG 8 cut(s) 167, 231, 585, 697, 1156, 1286, 1290, 1474
BstFNI CGCG 3 cut(s) 57, 1072, 1362
BstH2I RGCGCY 1 cut(s) 433
BstHHI GCGC 5 cut(s) 57, 432, 1072, 1362, 1422
BstKTI GATC 6 cut(s) 115, 312, 514, 698, 922, 1393
BstMAI GTCTC 5 cut(s) 361, 811, 998, 1158, 1446
BstMBI GATC 6 cut(s) 112, 309, 511, 695, 919, 1390
BstMWI GCNNNNNNNGC 3 cut(s) 63, 151, 1359
BstNI CCWGG 2 cut(s) 456, 1270
BstNSI RCATGY 4 cut(s) 374, 549, 580, 1136
BstSCI CCNGG 2 cut(s) 454, 1268
BstSFI CTRYAG 1 cut(s) 136
BstUI CGCG 3 cut(s) 57, 1072, 1362
BstV1I GCAGC 4 cut(s) 64, 337, 514, 1194
BstX2I RGATCY 2 cut(s) 112, 1390
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 2 cut(s) 112, 1390
Bsu15I ATCGAT 1 cut(s) 1191
BsuRI GGCC 5 cut(s) 13, 77, 711, 779, 1223
BsuTUI ATCGAT 1 cut(s) 1191
BtsCI GGATG 8 cut(s) 167, 231, 585, 697, 1156, 1286, 1290, 1474
BtsI GCAGTG 2 cut(s) 642, 901
BtsIMutI CAGTG 3 cut(s) 642, 901, 1014
BveI ACCTGC 3 cut(s) 352, 632, 724
Cac8I GCNNGC 3 cut(s) 68, 582, 1180
CaiI CAGNNNCTG 2 cut(s) 215, 647
CfoI GCGC 5 cut(s) 57, 432, 1072, 1362, 1422
Cfr13I GGNCC 2 cut(s) 857, 1031
ClaI ATCGAT 1 cut(s) 1191
Csp6I GTAC 2 cut(s) 915, 1288
CspCI CAANNNNNGTGG 4 cut(s) 520, 555, 1156, 1191
CviAII CATG 6 cut(s) 313, 371, 546, 577, 949, 1133
CviQI GTAC 2 cut(s) 915, 1288
DdeI CTNAG 4 cut(s) 108, 515, 784, 1245
DpnI GATC 6 cut(s) 114, 311, 513, 697, 921, 1392
DpnII GATC 6 cut(s) 112, 309, 511, 695, 919, 1390
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
EaeI YGGCCR 2 cut(s) 75, 709
Ecl136II GAGCTC 1 cut(s) 70
Eco24I GRGCYC 2 cut(s) 72, 464
Eco32I GATATC 1 cut(s) 673
Eco47I GGWCC 2 cut(s) 857, 1031
Eco53kI GAGCTC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 1422
Eco88I CYCGRG 2 cut(s) 146, 1304
EcoICRI GAGCTC 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 857
EcoRII CCWGG 2 cut(s) 454, 1268
EcoRV GATATC 1 cut(s) 673
EcoT38I GRGCYC 2 cut(s) 72, 464
FaeI CATG 6 cut(s) 316, 374, 549, 580, 952, 1136
FalI AAGNNNNNCTT 2 cut(s) 249, 281
FaqI GGGAC 1 cut(s) 870
FatI CATG 6 cut(s) 312, 370, 545, 576, 948, 1132
FauI CCCGC 2 cut(s) 219, 1049
FauNDI CATATG 1 cut(s) 1082
FbaI TGATCA 1 cut(s) 919
Fnu4HI GCNGC 5 cut(s) 53, 189, 351, 528, 1183
FokI GGATG 8 cut(s) 174, 218, 572, 704, 1143, 1293, 1297, 1481
FriOI GRGCYC 2 cut(s) 72, 464
Fsp4HI GCNGC 5 cut(s) 53, 189, 351, 528, 1183
FspBI CTAG 2 cut(s) 1275, 1397
GlaI GCGC 5 cut(s) 56, 431, 1071, 1361, 1421
GluI GCNGC 5 cut(s) 53, 189, 351, 528, 1183
GsuI CTGGAG 2 cut(s) 864, 1444
HaeII RGCGCY 1 cut(s) 433
HaeIII GGCC 5 cut(s) 13, 77, 711, 779, 1223
HhaI GCGC 5 cut(s) 57, 432, 1072, 1362, 1422
Hin1II CATG 6 cut(s) 316, 374, 549, 580, 952, 1136
Hin6I GCGC 5 cut(s) 55, 430, 1070, 1360, 1420
HinP1I GCGC 5 cut(s) 55, 430, 1070, 1360, 1420
HindIII AAGCTT 1 cut(s) 178
HinfI GANTC 6 cut(s) 571, 1108, 1151, 1188, 1213, 1433
HphI GGTGA 6 cut(s) 206, 334, 376, 497, 761, 1293
Hpy166II GTNNAC 3 cut(s) 169, 982, 1021
Hpy188III TCNNGA 7 cut(s) 148, 557, 1204, 1255, 1388, 1397, 1466
Hpy8I GTNNAC 3 cut(s) 169, 982, 1021
Hpy99I CGWCG 1 cut(s) 1367
HpyAV CCTTC 2 cut(s) 561, 790
HpyCH4III ACNGT 6 cut(s) 95, 1001, 1009, 1067, 1171, 1326
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 151, 1359
HpyF3I CTNAG 4 cut(s) 108, 515, 784, 1245
Hsp92II CATG 6 cut(s) 316, 374, 549, 580, 952, 1136
HspAI GCGC 5 cut(s) 55, 430, 1070, 1360, 1420
Ksp22I TGATCA 1 cut(s) 919
Kzo9I GATC 6 cut(s) 112, 309, 511, 695, 919, 1390
LmnI GCTCC 3 cut(s) 459, 976, 1102
Lsp1109I GCAGC 4 cut(s) 64, 337, 514, 1194
LweI GCATC 4 cut(s) 33, 889, 944, 1155
MaeI CTAG 2 cut(s) 1275, 1397
MaeIII GTNAC 4 cut(s) 541, 572, 868, 1196
MalI GATC 6 cut(s) 114, 311, 513, 697, 921, 1392
MbiI CCGCTC 1 cut(s) 1056
MboI GATC 6 cut(s) 112, 309, 511, 695, 919, 1390
MboII GAAGA 6 cut(s) 500, 1099, 1270, 1273, 1385, 1428
MfeI CAATTG 3 cut(s) 447, 600, 606
MflI RGATCY 2 cut(s) 112, 1390
MhlI GDGCHC 2 cut(s) 72, 464
MluCI AATT 9 cut(s) 82, 241, 378, 447, 600, 606, 625, 765, 1141
MlyI GAGTC 3 cut(s) 580, 1160, 1207
MmeI TCCRAC 1 cut(s) 742
MslI CAYNNNNRTG 2 cut(s) 594, 927
MspA1I CMGCKG 1 cut(s) 1185
MspR9I CCNGG 2 cut(s) 456, 1270
MunI CAATTG 3 cut(s) 447, 600, 606
Mva1269I GAATGC 1 cut(s) 1412
MvaI CCWGG 2 cut(s) 456, 1270
MvnI CGCG 3 cut(s) 57, 1072, 1362
MwoI GCNNNNNNNGC 3 cut(s) 63, 151, 1359
NdeI CATATG 1 cut(s) 1082
NdeII GATC 6 cut(s) 112, 309, 511, 695, 919, 1390
NlaIII CATG 6 cut(s) 316, 374, 549, 580, 952, 1136
NlaIV GGNNCC 2 cut(s) 461, 858
NmeAIII GCCGAG 1 cut(s) 53
NmuCI GTSAC 3 cut(s) 541, 572, 1196
NspI RCATGY 4 cut(s) 374, 549, 580, 1136
PaeR7I CTCGAG 1 cut(s) 146
PaqCI CACCTGC 1 cut(s) 352
PasI CCCWGGG 1 cut(s) 1269
PctI GAATGC 1 cut(s) 1412
PfeI GAWTC 3 cut(s) 1108, 1188, 1433
PkrI GCNGC 5 cut(s) 54, 190, 352, 529, 1184
PleI GAGTC 3 cut(s) 579, 1159, 1207
PpsI GAGTC 3 cut(s) 579, 1159, 1207
PpuMI RGGWCCY 1 cut(s) 857
Psp124BI GAGCTC 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 857
Psp6I CCWGG 2 cut(s) 454, 1268
PspGI CCWGG 2 cut(s) 454, 1268
PspN4I GGNNCC 2 cut(s) 461, 858
PspPI GGNCC 2 cut(s) 857, 1031
PspPPI RGGWCCY 1 cut(s) 857
PstNI CAGNNNCTG 2 cut(s) 215, 647
PsuI RGATCY 2 cut(s) 112, 1390
RsaI GTAC 2 cut(s) 916, 1289
RsaNI GTAC 2 cut(s) 915, 1288
RseI CAYNNNNRTG 2 cut(s) 594, 927
SacI GAGCTC 1 cut(s) 72
SatI GCNGC 5 cut(s) 53, 189, 351, 528, 1183
Sau3AI GATC 6 cut(s) 112, 309, 511, 695, 919, 1390
Sau96I GGNCC 2 cut(s) 857, 1031
ScaI AGTACT 1 cut(s) 916
SchI GAGTC 3 cut(s) 580, 1160, 1207
ScrFI CCNGG 2 cut(s) 456, 1270
SduI GDGCHC 2 cut(s) 72, 464
SfaNI GCATC 4 cut(s) 33, 889, 944, 1155
SfcI CTRYAG 1 cut(s) 136
Sfr274I CTCGAG 1 cut(s) 146
SinI GGWCC 2 cut(s) 857, 1031
SlaI CTCGAG 1 cut(s) 146
SmiMI CAYNNNNRTG 2 cut(s) 594, 927
SmlI CTYRAG 2 cut(s) 146, 975
SmoI CTYRAG 2 cut(s) 146, 975
Sse9I AATT 9 cut(s) 82, 241, 378, 447, 600, 606, 625, 765, 1141
SsiI CCGC 7 cut(s) 188, 226, 676, 1056, 1072, 1185, 1291
SspI AATATT 1 cut(s) 295
SspMI CTAG 2 cut(s) 1275, 1397
SstI GAGCTC 1 cut(s) 72
StyD4I CCNGG 2 cut(s) 454, 1268
TaaI ACNGT 6 cut(s) 95, 1001, 1009, 1067, 1171, 1326
TaqI TCGA 6 cut(s) 124, 147, 661, 1149, 1191, 1254
TasI AATT 9 cut(s) 82, 241, 378, 447, 600, 606, 625, 765, 1141
TatI WGTACW 1 cut(s) 914
TauI GCSGC 1 cut(s) 191
TfiI GAWTC 3 cut(s) 1108, 1188, 1433
TscAI CASTG 3 cut(s) 642, 901, 1014
TseFI GTSAC 3 cut(s) 541, 572, 1196
TseI GCWGC 4 cut(s) 52, 350, 527, 1182
Tsp45I GTSAC 3 cut(s) 541, 572, 1196
TspDTI ATGAA 6 cut(s) 17, 258, 396, 975, 1069, 1320
TspGWI ACGGA 1 cut(s) 1461
TspRI CASTG 3 cut(s) 642, 901, 1014
VpaK11BI GGWCC 2 cut(s) 857, 1031
XapI RAATTY 3 cut(s) 82, 378, 625
XbaI TCTAGA 1 cut(s) 1396
XceI RCATGY 4 cut(s) 374, 549, 580, 1136
XcmI CCANNNNNNNNNTGG 2 cut(s) 98, 557
XhoI CTCGAG 1 cut(s) 146
XspI CTAG 2 cut(s) 1275, 1397
ZrmI AGTACT 1 cut(s) 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.