Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006022

Physical Location & Seq

Genomic Coordinates Reverse (-)

16787585 .. 16799103

Gene Structure 11519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0121900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTGGAAAATTGAAACAGGGCATTTTTGTGTTCAGAGTGCTTGGAGTTTGAGGCTGGCAGGGATGGAGGACACGGCGGAGCTGCTGGAGAAGAAGCCAGCGTCGGAAATTTTGAAGATGAGCTTAGTGGAGGCACTCACTCTTGCTCGTGCTTTCAGCCATTACCTCAATTTGATGGGCATTGCTGAAGTTCATCACAGGGTTCGTAGACAAAAGAATGTGCATCCCTATCAAAATCTTGTGATGATATTTTTAATCAGCTTCTGCAGCGTGGTGTTTCCCCAGACCAGCTTTACGATACCGTTTGCAAGCAGGTTGGTGCGAGAGATAACTTCTGTATGGCAAAGAGATGAGCTTAAGCACCATAAACCCACACCATTTGATGAAGCTAGGGTAGGTTTGAACATTGTGGAGCAGTCCTTTTGGAAAGTTGTACCTCATTATTTACGTCGTCTCAGCAATGCTTTAAAGAAGGACACTAGAAAACCACTTCCATTGAAATGCACACCAATCAGGTTTGGGTCTTGGATGGGGGGTGATAGAGATGGAAATCCCAATGTGACAGCAAAGGAATCTGGTAGACATGCTGAAACACTTGATGCAATTACCAAATATTTGGATATGGGCACATACAGTGAGTGGGATGAAGAAAAGAAACTGGAATTTCTAACAAGAGAGCTCAAAGGAAAAAGACCGCTAGTCCCACCTAGCATGGAGGGTACTCTACGATCAATTGAGCAAGAAGAAATGGTACAGTCAAAATTTGGGCTAACACAGATTGCTGTCAGACAGCTAGAGATATACACAACAGCTGTGCTGCTTGCAACGTTGCATCCACCACACCCTCCTCGAGAACAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005829 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0080008 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

287

Amino Acids

33.07

Weight (kDa)

9.26

Isoelectric Point (pI)

49.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	103 - 190	1.1e-28	Phosphoenolpyruvate carboxylase
PEPcase	PF00311	190 - 238	3e-10	Phosphoenolpyruvate carboxylase
PEPcase	PF00311	237 - 285	1.2e-07	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35140 AT4G35140 AT4G38480 AT4G38480
fragaria_vesca	FvH4_2g15750 FvH4_2g15750 FvH4_2g15750
malus_domestica	MD05G1126500.v1.1
prunus_persica	Prupe.8G169900_v2.0.a1 Prupe.8G169900_v2.0.a1 Prupe.8G169900_v2.0.a1
pyrus_communis	pycom05g12230
rosa_chinensis	RchiOBHm_Chr6g0279061 RchiOBHm_Chr6g0279071
rosa_laevigata	RLG00000013169
rosa_multiflora	Rmu_co8384295.1_g000001
rosa_roxburghii	Rroxscaffold_7G00189170
rosa_rugosa	Rorug06G0121800 Rorug06G0121900 Rorug06G0122000
rosa_samantha	Rh6AG230800 Rh6BG235600 Rh6CG237700 Rh6DG229300
rosa_wichuraiana	Rw0G017050 Rw0G021130 Rw6G020200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	303
AccI	GTMKAC	2 cut(s)	208, 580
AciI	CCGC	2 cut(s)	77, 695
AclI	AACGTT	1 cut(s)	827
AcsI	RAATTY	3 cut(s)	108, 662, 761
AcuI	CTGAAG	1 cut(s)	207
AfaI	GTAC	3 cut(s)	435, 721, 753
AflII	CTTAAG	1 cut(s)	356
AgsI	TTSAA	4 cut(s)	14, 115, 403, 499
AhdI	GACNNNNNGTC	1 cut(s)	698
AluBI	AGCT	9 cut(s)	82, 123, 261, 291, 355, 389, 679, 793, 812
AluI	AGCT	9 cut(s)	82, 123, 261, 291, 355, 389, 679, 793, 812
Alw21I	GWGCWC	1 cut(s)	681
Alw26I	GTCTC	1 cut(s)	458
AlwNI	CAGNNNCTG	1 cut(s)	264
Ama87I	CYCGRG	1 cut(s)	849
ApeKI	GCWGC	3 cut(s)	82, 267, 817
ApoI	RAATTY	3 cut(s)	108, 662, 761
AsuHPI	GGTGA	1 cut(s)	548
AvaI	CYCGRG	1 cut(s)	849
BaeGI	GKGCMC	1 cut(s)	629
BanII	GRGCYC	1 cut(s)	681
BarI	GAAGNNNNNNTAC	2 cut(s)	735, 767
BauI	CACGAG	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	681
BbvI	GCAGC	3 cut(s)	69, 279, 804
BccI	CCATC	4 cut(s)	58, 169, 523, 539
BceAI	ACGGC	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	5 cut(s)	390, 480, 698, 708, 794
BfmI	CTRYAG	1 cut(s)	265
BfrI	CTTAAG	1 cut(s)	356
BfuAI	ACCTGC	1 cut(s)	303
BisI	GCNGC	3 cut(s)	83, 268, 818
BlsI	GCNGC	3 cut(s)	84, 269, 819
BmeRI	GACNNNNNGTC	1 cut(s)	698
BmeT110I	CYCGRG	1 cut(s)	849
BmsI	GCATC	3 cut(s)	232, 589, 841
BpmI	CTGGAG	1 cut(s)	107
BsaBI	GATNNNNATC	1 cut(s)	549
Bse1I	ACTGG	1 cut(s)	663
Bse3DI	GCAATG	2 cut(s)	180, 466
Bse8I	GATNNNNATC	1 cut(s)	549
BseGI	GGATG	5 cut(s)	69, 223, 534, 649, 832
BseJI	GATNNNNATC	1 cut(s)	549
BseMI	GCAATG	2 cut(s)	180, 466
BseMII	CTCAG	1 cut(s)	469
BseNI	ACTGG	1 cut(s)	663
BseRI	GAGGAG	1 cut(s)	837
BseSI	GKGCMC	1 cut(s)	629
BseXI	GCAGC	3 cut(s)	69, 279, 804
BsiHKAI	GWGCWC	1 cut(s)	681
BsiHKCI	CYCGRG	1 cut(s)	849
BslFI	GGGAC	1 cut(s)	686
BsmAI	GTCTC	1 cut(s)	458
BsmBI	CGTCTC	1 cut(s)	458
BsmFI	GGGAC	1 cut(s)	686
BsoBI	CYCGRG	1 cut(s)	849
Bsp1286I	GDGCHC	2 cut(s)	629, 681
Bsp143I	GATC	1 cut(s)	728
BspACI	CCGC	2 cut(s)	77, 695
BspCNI	CTCAG	1 cut(s)	468
BspMAI	CTGCAG	1 cut(s)	269
BspMI	ACCTGC	1 cut(s)	303
BspTI	CTTAAG	1 cut(s)	356
BsrDI	GCAATG	2 cut(s)	180, 466
BsrI	ACTGG	1 cut(s)	663
BssMI	GATC	1 cut(s)	728
BssSI	CACGAG	1 cut(s)	147
Bst2BI	CACGAG	1 cut(s)	147
Bst4CI	ACNGT	3 cut(s)	303, 635, 756
BstAFI	CTTAAG	1 cut(s)	356
BstC8I	GCNNGC	4 cut(s)	57, 99, 310, 822
BstDEI	CTNAG	2 cut(s)	124, 455
BstF5I	GGATG	5 cut(s)	69, 223, 534, 649, 832
BstKTI	GATC	1 cut(s)	731
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	1 cut(s)	728
BstMWI	GCNNNNNNNGC	1 cut(s)	267
BstNSI	RCATGY	1 cut(s)	587
BstSFI	CTRYAG	1 cut(s)	265
BstSLI	GKGCMC	1 cut(s)	629
BstV1I	GCAGC	3 cut(s)	69, 279, 804
BstXI	CCANNNNNNTGG	1 cut(s)	616
BtsCI	GGATG	5 cut(s)	69, 223, 534, 649, 832
BtsIMutI	CAGTG	1 cut(s)	640
BveI	ACCTGC	1 cut(s)	303
Cac8I	GCNNGC	4 cut(s)	57, 99, 310, 822
CaiI	CAGNNNCTG	1 cut(s)	264
CseI	GACGC	1 cut(s)	90
Csp6I	GTAC	3 cut(s)	434, 720, 752
CspCI	CAANNNNNGTGG	4 cut(s)	361, 396, 477, 512
CviAII	CATG	2 cut(s)	584, 712
CviQI	GTAC	3 cut(s)	434, 720, 752
DdeI	CTNAG	2 cut(s)	124, 455
DpnI	GATC	1 cut(s)	730
DpnII	GATC	1 cut(s)	728
DraI	TTTAAA	1 cut(s)	468
DriI	GACNNNNNGTC	1 cut(s)	698
Eam1105I	GACNNNNNGTC	1 cut(s)	698
EciI	GGCGGA	1 cut(s)	92
Ecl136II	GAGCTC	1 cut(s)	679
Eco24I	GRGCYC	1 cut(s)	681
Eco53kI	GAGCTC	1 cut(s)	679
Eco57I	CTGAAG	1 cut(s)	207
Eco88I	CYCGRG	1 cut(s)	849
EcoICRI	GAGCTC	1 cut(s)	679
EcoT38I	GRGCYC	1 cut(s)	681
Esp3I	CGTCTC	1 cut(s)	458
FaeI	CATG	2 cut(s)	587, 715
FaiI	YATR	7 cut(s)	340, 366, 585, 623, 631, 713, 802
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	1 cut(s)	686
FatI	CATG	2 cut(s)	583, 711
FblI	GTMKAC	2 cut(s)	208, 580
Fnu4HI	GCNGC	3 cut(s)	83, 268, 818
FokI	GGATG	5 cut(s)	76, 210, 541, 656, 819
FriOI	GRGCYC	1 cut(s)	681
Fsp4HI	GCNGC	3 cut(s)	83, 268, 818
FspBI	CTAG	5 cut(s)	390, 480, 698, 708, 794
GluI	GCNGC	3 cut(s)	83, 268, 818
GsuI	CTGGAG	1 cut(s)	107
HgaI	GACGC	1 cut(s)	90
Hin1II	CATG	2 cut(s)	587, 715
HinfI	GANTC	1 cut(s)	572
HphI	GGTGA	1 cut(s)	548
Hpy166II	GTNNAC	2 cut(s)	209, 581
Hpy188I	TCNGA	3 cut(s)	36, 106, 788
Hpy188III	TCNNGA	1 cut(s)	851
Hpy8I	GTNNAC	2 cut(s)	209, 581
Hpy99I	CGWCG	2 cut(s)	106, 453
HpyAV	CCTTC	1 cut(s)	466
HpyCH4III	ACNGT	3 cut(s)	303, 635, 756
HpyCH4IV	ACGT	2 cut(s)	448, 827
HpyCH4V	TGCA	7 cut(s)	223, 267, 308, 504, 602, 824, 832
HpyF10VI	GCNNNNNNNGC	1 cut(s)	267
HpyF3I	CTNAG	2 cut(s)	124, 455
HpySE526I	ACGT	2 cut(s)	448, 827
Hsp92II	CATG	2 cut(s)	587, 715
Kzo9I	GATC	1 cut(s)	728
LmnI	GCTCC	2 cut(s)	79, 412
Lsp1109I	GCAGC	3 cut(s)	69, 279, 804
LweI	GCATC	3 cut(s)	232, 589, 841
MaeI	CTAG	5 cut(s)	390, 480, 698, 708, 794
MaeII	ACGT	2 cut(s)	448, 827
MaeIII	GTNAC	1 cut(s)	559
MalI	GATC	1 cut(s)	730
MboI	GATC	1 cut(s)	728
MboII	GAAGA	4 cut(s)	103, 127, 659, 755
MfeI	CAATTG	1 cut(s)	732
MhlI	GDGCHC	2 cut(s)	629, 681
MluCI	AATT	7 cut(s)	9, 108, 169, 603, 662, 732, 761
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	8 cut(s)	45, 61, 124, 176, 447, 709, 855, 858
MseI	TTAA	3 cut(s)	254, 357, 467
MslI	CAYNNNNRTG	2 cut(s)	27, 499
MspA1I	CMGCKG	1 cut(s)	812
MspCI	CTTAAG	1 cut(s)	356
MunI	CAATTG	1 cut(s)	732
MwoI	GCNNNNNNNGC	1 cut(s)	267
NdeII	GATC	1 cut(s)	728
NlaIII	CATG	2 cut(s)	587, 715
NmuCI	GTSAC	1 cut(s)	559
NspI	RCATGY	1 cut(s)	587
PaeR7I	CTCGAG	1 cut(s)	849
PfeI	GAWTC	1 cut(s)	572
PkrI	GCNGC	3 cut(s)	84, 269, 819
Psp124BI	GAGCTC	1 cut(s)	681
Psp1406I	AACGTT	1 cut(s)	827
PstI	CTGCAG	1 cut(s)	269
PstNI	CAGNNNCTG	1 cut(s)	264
PvuII	CAGCTG	1 cut(s)	812
RsaI	GTAC	3 cut(s)	435, 721, 753
RsaNI	GTAC	3 cut(s)	434, 720, 752
RseI	CAYNNNNRTG	2 cut(s)	27, 499
SacI	GAGCTC	1 cut(s)	681
SaqAI	TTAA	3 cut(s)	254, 357, 467
SatI	GCNGC	3 cut(s)	83, 268, 818
Sau3AI	GATC	1 cut(s)	728
SduI	GDGCHC	2 cut(s)	629, 681
SfaNI	GCATC	3 cut(s)	232, 589, 841
SfcI	CTRYAG	1 cut(s)	265
Sfr274I	CTCGAG	1 cut(s)	849
SlaI	CTCGAG	1 cut(s)	849
SmiMI	CAYNNNNRTG	2 cut(s)	27, 499
SmlI	CTYRAG	2 cut(s)	356, 849
SmoI	CTYRAG	2 cut(s)	356, 849
Sse9I	AATT	7 cut(s)	9, 108, 169, 603, 662, 732, 761
SsiI	CCGC	2 cut(s)	77, 695
SspI	AATATT	1 cut(s)	614
SspMI	CTAG	5 cut(s)	390, 480, 698, 708, 794
SstI	GAGCTC	1 cut(s)	681
TaaI	ACNGT	3 cut(s)	303, 635, 756
TaiI	ACGT	2 cut(s)	451, 830
TaqI	TCGA	1 cut(s)	850
TasI	AATT	7 cut(s)	9, 108, 169, 603, 662, 732, 761
TfiI	GAWTC	1 cut(s)	572
Tru1I	TTAA	3 cut(s)	254, 357, 467
Tru9I	TTAA	3 cut(s)	254, 357, 467
TscAI	CASTG	1 cut(s)	640
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	3 cut(s)	82, 267, 817
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	3 cut(s)	182, 399, 660
TspRI	CASTG	1 cut(s)	640
Vha464I	CTTAAG	1 cut(s)	356
XapI	RAATTY	3 cut(s)	108, 662, 761
XceI	RCATGY	1 cut(s)	587
XhoI	CTCGAG	1 cut(s)	849
XmiI	GTMKAC	2 cut(s)	208, 580
XspI	CTAG	5 cut(s)	390, 480, 698, 708, 794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.