Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8384295.1

Orthogroup ID

OG0006022

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1033

Gene Structure 1033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8384295.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atgcatggtgctggtttgggttttgatctcagaactggggctcccacaaaacttttgacatgccaaacacttgatggtagaaggagttacttgccagttatcagtctaaatgcaattgcaattgacccaagaaatccaaatctctttgcagtcgcaggttctgatgagtatacccggctttttgatatccgcaagtataactgggatggatcatctgattttggtcaacccacgaactacttctgcccaccacatttgaatggtaatgaccaagttggaattacaggcttggccttttcagaacaaagtgagcttcttgtatcatacaatgacgagttcatctatctttttacacgagaaatgggattaggacctaatcctcccatttccatgagtagtgatacaagtgaaatgagtgatgatcaccagtctgaagaatctccatcatccatggatactgatgaaaaaactgttcctcaagtttacaagggtcacttgaactctgagacagtgaaaggtgtgaacttctttgggccgaaatgcgagtatgttgtgagtgggtctgactgtgggcggatattcatatggaagaaaaagggaggtgagttgattcgtgtcatggaaggagataaggatgtagtgaactgtatcaagtctcatcctcacaccatggtacttgcaagcagtggaattgaaaatgatattaagatgtggactccaaaggctctagagagagctactctgcctcagaacattgaacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005829 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0080008 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

254

Amino Acids

28.15

Weight (kDa)

4.98

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35140 AT4G35140 AT4G38480 AT4G38480
fragaria_vesca	FvH4_2g15750 FvH4_2g15750 FvH4_2g15750
malus_domestica	MD05G1126500.v1.1
prunus_persica	Prupe.8G169900_v2.0.a1 Prupe.8G169900_v2.0.a1 Prupe.8G169900_v2.0.a1
pyrus_communis	pycom05g12230
rosa_chinensis	RchiOBHm_Chr6g0279061 RchiOBHm_Chr6g0279071
rosa_laevigata	RLG00000013169
rosa_multiflora	Rmu_co8384295.1_g000001
rosa_roxburghii	Rroxscaffold_7G00189170
rosa_rugosa	Rorug06G0121800 Rorug06G0121900 Rorug06G0122000
rosa_samantha	Rh6AG230800 Rh6BG235600 Rh6CG237700 Rh6DG229300
rosa_wichuraiana	Rw0G017050 Rw0G021130 Rw6G020200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	170
AciI	CCGC	2 cut(s)	190, 574
AclWI	GGATC	1 cut(s)	217
AcuI	CTGAAG	1 cut(s)	453
AfaI	GTAC	1 cut(s)	675
AgsI	TTSAA	4 cut(s)	259, 499, 695, 758
AloI	GAACNNNNNNTCC	2 cut(s)	25, 57
AluBI	AGCT	2 cut(s)	313, 737
AluI	AGCT	2 cut(s)	313, 737
Alw26I	GTCTC	2 cut(s)	500, 660
AlwI	GGATC	1 cut(s)	217
AlwNI	CAGNNNCTG	1 cut(s)	161
AoxI	GGCC	2 cut(s)	291, 533
Asp700I	GAANNNNTTC	1 cut(s)	239
AspS9I	GGNCC	2 cut(s)	371, 533
AsuC2I	CCSGG	1 cut(s)	175
AsuHPI	GGTGA	2 cut(s)	416, 614
AvaII	GGWCC	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	43
BauI	CACGAG	1 cut(s)	354
BccI	CCATC	3 cut(s)	68, 200, 451
BciVI	GTATCC	1 cut(s)	448
BclI	TGATCA	1 cut(s)	421
BcnI	CCSGG	1 cut(s)	175
BcoDI	GTCTC	2 cut(s)	500, 660
BfaI	CTAG	1 cut(s)	728
BfuAI	ACCTGC	1 cut(s)	146
BfuI	GTATCC	1 cut(s)	448
Bme1390I	CCNGG	1 cut(s)	175
Bme18I	GGWCC	1 cut(s)	371
BmgT120I	GGNCC	2 cut(s)	371, 533
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	175
BmrI	ACTGGG	2 cut(s)	45, 211
BmuI	ACTGGG	2 cut(s)	45, 211
BplI	GAGNNNNNCTC	2 cut(s)	724, 756
BpuEI	CTTGAG	1 cut(s)	462
BpuMI	CCSGG	1 cut(s)	175
BsaJI	CCNNGG	2 cut(s)	450, 669
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bse1I	ACTGG	4 cut(s)	40, 95, 206, 427
BseDI	CCNNGG	2 cut(s)	450, 669
BseGI	GGATG	4 cut(s)	211, 446, 640, 658
BseMII	CTCAG	3 cut(s)	43, 495, 761
BseNI	ACTGG	4 cut(s)	40, 95, 206, 427
BshFI	GGCC	2 cut(s)	293, 535
BsiSI	CCGG	1 cut(s)	175
BsmAI	GTCTC	2 cut(s)	500, 660
BsnI	GGCC	2 cut(s)	293, 535
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	3 cut(s)	25, 209, 421
Bsp19I	CCATGG	2 cut(s)	450, 669
BspACI	CCGC	2 cut(s)	190, 574
BspANI	GGCC	2 cut(s)	293, 535
BspCNI	CTCAG	3 cut(s)	42, 496, 760
BspLI	GGNNCC	1 cut(s)	42
BspMI	ACCTGC	1 cut(s)	146
BspPI	GGATC	1 cut(s)	217
BsrI	ACTGG	4 cut(s)	40, 95, 206, 427
BssECI	CCNNGG	2 cut(s)	450, 669
BssMI	GATC	3 cut(s)	25, 209, 421
BssNAI	GTATAC	1 cut(s)	171
BssSI	CACGAG	1 cut(s)	354
BssT1I	CCWWGG	2 cut(s)	450, 669
Bst1107I	GTATAC	1 cut(s)	171
Bst2BI	CACGAG	1 cut(s)	354
Bst4CI	ACNGT	4 cut(s)	472, 511, 569, 647
BstC8I	GCNNGC	1 cut(s)	682
BstDEI	CTNAG	3 cut(s)	29, 504, 747
BstDSI	CCRYGG	2 cut(s)	450, 669
BstF5I	GGATG	4 cut(s)	211, 446, 640, 658
BstKTI	GATC	3 cut(s)	28, 212, 424
BstMAI	GTCTC	2 cut(s)	500, 660
BstMBI	GATC	3 cut(s)	25, 209, 421
BstNSI	RCATGY	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	173
BstZ17I	GTATAC	1 cut(s)	171
BsuI	GTATCC	1 cut(s)	448
BsuRI	GGCC	2 cut(s)	293, 535
BtgI	CCRYGG	2 cut(s)	450, 669
BtsCI	GGATG	4 cut(s)	211, 446, 640, 658
BtsI	GCAGTG	1 cut(s)	691
BtsIMutI	CAGTG	2 cut(s)	516, 691
BveI	ACCTGC	1 cut(s)	146
Cac8I	GCNNGC	1 cut(s)	682
CaiI	CAGNNNCTG	1 cut(s)	161
Cfr13I	GGNCC	2 cut(s)	371, 533
Csp6I	GTAC	1 cut(s)	674
CspCI	CAANNNNNGTGG	2 cut(s)	237, 272
CviAII	CATG	6 cut(s)	5, 60, 391, 451, 619, 670
CviJI	RGCY	8 cut(s)	41, 178, 288, 293, 313, 535, 725, 737
CviKI_1	RGCY	8 cut(s)	41, 178, 288, 293, 313, 535, 725, 737
CviQI	GTAC	1 cut(s)	674
DdeI	CTNAG	3 cut(s)	29, 504, 747
DpnI	GATC	3 cut(s)	27, 211, 423
DpnII	GATC	3 cut(s)	25, 209, 421
EciI	GGCGGA	1 cut(s)	589
Eco130I	CCWWGG	2 cut(s)	450, 669
Eco24I	GRGCYC	1 cut(s)	43
Eco32I	GATATC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	371
Eco57I	CTGAAG	1 cut(s)	453
EcoO109I	RGGNCCY	1 cut(s)	371
EcoRV	GATATC	1 cut(s)	187
EcoT14I	CCWWGG	2 cut(s)	450, 669
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	43
ErhI	CCWWGG	2 cut(s)	450, 669
FaeI	CATG	6 cut(s)	8, 63, 394, 454, 622, 673
FalI	AAGNNNNNCTT	2 cut(s)	479, 511
FatI	CATG	6 cut(s)	4, 59, 390, 450, 618, 669
FauNDI	CATATG	1 cut(s)	584
FbaI	TGATCA	1 cut(s)	421
FblI	GTMKAC	1 cut(s)	170
FokI	GGATG	4 cut(s)	218, 433, 645, 647
FriOI	GRGCYC	1 cut(s)	43
FspBI	CTAG	1 cut(s)	728
HaeIII	GGCC	2 cut(s)	293, 535
HapII	CCGG	1 cut(s)	175
Hin1II	CATG	6 cut(s)	8, 63, 394, 454, 622, 673
HincII	GTYRAC	1 cut(s)	227
HindII	GTYRAC	1 cut(s)	227
HinfI	GANTC	3 cut(s)	437, 610, 715
HpaII	CCGG	1 cut(s)	175
HphI	GGTGA	2 cut(s)	416, 614
Hpy166II	GTNNAC	6 cut(s)	171, 227, 484, 523, 643, 714
Hpy188I	TCNGA	8 cut(s)	32, 163, 217, 301, 433, 505, 565, 750
Hpy188III	TCNNGA	1 cut(s)	728
Hpy8I	GTNNAC	6 cut(s)	171, 227, 484, 523, 643, 714
HpyAV	CCTTC	2 cut(s)	75, 617
HpyCH4III	ACNGT	4 cut(s)	472, 511, 569, 647
HpyCH4V	TGCA	5 cut(s)	4, 113, 119, 149, 680
HpyF3I	CTNAG	3 cut(s)	29, 504, 747
Hsp92II	CATG	6 cut(s)	8, 63, 394, 454, 622, 673
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	3 cut(s)	25, 209, 421
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	7 cut(s)	21, 108, 141, 187, 188, 270, 440
MaeI	CTAG	1 cut(s)	728
MaeIII	GTNAC	2 cut(s)	86, 491
MalI	GATC	3 cut(s)	27, 211, 423
MboI	GATC	3 cut(s)	25, 209, 421
MboII	GAAGA	2 cut(s)	446, 601
MfeI	CAATTG	2 cut(s)	114, 120
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	4 cut(s)	114, 120, 279, 690
MlyI	GAGTC	1 cut(s)	709
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	5 cut(s)	390, 486, 593, 672, 756
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	239
MseI	TTAA	1 cut(s)	705
MslI	CAYNNNNRTG	2 cut(s)	258, 389
MspI	CCGG	1 cut(s)	175
MspR9I	CCNGG	1 cut(s)	175
MunI	CAATTG	2 cut(s)	114, 120
NciI	CCSGG	1 cut(s)	175
NcoI	CCATGG	2 cut(s)	450, 669
NdeI	CATATG	1 cut(s)	584
NdeII	GATC	3 cut(s)	25, 209, 421
NlaIII	CATG	6 cut(s)	8, 63, 394, 454, 622, 673
NlaIV	GGNNCC	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	491
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	2 cut(s)	437, 610
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
PpuMI	RGGWCCY	1 cut(s)	371
Psp5II	RGGWCCY	1 cut(s)	371
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	2 cut(s)	371, 533
PspPPI	RGGWCCY	1 cut(s)	371
PstNI	CAGNNNCTG	1 cut(s)	161
RsaI	GTAC	1 cut(s)	675
RsaNI	GTAC	1 cut(s)	674
RseI	CAYNNNNRTG	2 cut(s)	258, 389
SaqAI	TTAA	1 cut(s)	705
Sau3AI	GATC	3 cut(s)	25, 209, 421
Sau96I	GGNCC	2 cut(s)	371, 533
SchI	GAGTC	1 cut(s)	709
ScrFI	CCNGG	1 cut(s)	175
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	6 cut(s)	160, 315, 376, 520, 604, 739
SinI	GGWCC	1 cut(s)	371
SmiMI	CAYNNNNRTG	2 cut(s)	258, 389
SmlI	CTYRAG	1 cut(s)	477
SmoI	CTYRAG	1 cut(s)	477
Sse9I	AATT	4 cut(s)	114, 120, 279, 690
SsiI	CCGC	2 cut(s)	190, 574
SspMI	CTAG	1 cut(s)	728
StyD4I	CCNGG	1 cut(s)	173
StyI	CCWWGG	2 cut(s)	450, 669
TaaI	ACNGT	4 cut(s)	472, 511, 569, 647
TasI	AATT	4 cut(s)	114, 120, 279, 690
TfiI	GAWTC	2 cut(s)	437, 610
Tru1I	TTAA	1 cut(s)	705
Tru9I	TTAA	1 cut(s)	705
TscAI	CASTG	2 cut(s)	516, 691
TseFI	GTSAC	1 cut(s)	491
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	3 cut(s)	328, 477, 571
TspRI	CASTG	2 cut(s)	516, 691
VpaK11BI	GGWCC	1 cut(s)	371
XbaI	TCTAGA	1 cut(s)	727
XceI	RCATGY	1 cut(s)	63
XcmI	CCANNNNNNNNNTGG	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	170
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	1 cut(s)	728
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.