Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006022

Physical Location & Seq

Genomic Coordinates Reverse (-)

42256743 .. 42257179

Gene Structure 437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25031

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGTACCGCTTCTCGCCTCAGGAATTGATGCTGCAACTATTTTCACTGCAACGGCGGAGGACAAGCCCAGAGCACAGTGGGGAAAACTCATCGGCAGATCTAGAGCTAATACTGACATTAGATGCCAACAATGATGATTCTTCAGGAGAAGAAGCCGACGATGACAACTCCAGCCAGGGGGATTTTGTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005829 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0080008 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

64

Amino Acids

7.23

Weight (kDa)

4.05

Isoelectric Point (pI)

77.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35140 AT4G35140 AT4G38480 AT4G38480
fragaria_vesca	FvH4_2g15750 FvH4_2g15750 FvH4_2g15750
malus_domestica	MD05G1126500.v1.1
prunus_persica	Prupe.8G169900_v2.0.a1 Prupe.8G169900_v2.0.a1 Prupe.8G169900_v2.0.a1
pyrus_communis	pycom05g12230
rosa_chinensis	RchiOBHm_Chr6g0279061 RchiOBHm_Chr6g0279071
rosa_laevigata	RLG00000013169
rosa_multiflora	Rmu_co8384295.1_g000001
rosa_roxburghii	Rroxscaffold_7G00189170
rosa_rugosa	Rorug06G0121800 Rorug06G0121900 Rorug06G0122000
rosa_samantha	Rh6AG230800 Rh6BG235600 Rh6CG237700 Rh6DG229300
rosa_wichuraiana	Rw0G017050 Rw0G021130 Rw6G020200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	7, 55
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	177
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	1 cut(s)	106
AluI	AGCT	1 cut(s)	106
Alw21I	GWGCWC	1 cut(s)	75
ApeKI	GCWGC	1 cut(s)	31
AxyI	CCTNAGG	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	18
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	176
BfaI	CTAG	1 cut(s)	101
BglII	AGATCT	1 cut(s)	97
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
Bme1390I	CCNGG	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	2 cut(s)	18, 112
BpmI	CTGGAG	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	1 cut(s)	177
Bse21I	CCTNAGG	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	97
BspACI	CCGC	2 cut(s)	7, 55
BspCNI	CTCAG	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	1 cut(s)	97
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	1 cut(s)	77
BstDEI	CTNAG	1 cut(s)	18
BstKTI	GATC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	97
BstNI	CCWGG	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
Bsu36I	CCTNAGG	1 cut(s)	18
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	2 cut(s)	44, 82
Csp6I	GTAC	1 cut(s)	4
CviJI	RGCY	4 cut(s)	66, 106, 155, 174
CviKI_1	RGCY	4 cut(s)	66, 106, 155, 174
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
EciI	GGCGGA	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	126
Eco81I	CCTNAGG	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	32
FspBI	CTAG	1 cut(s)	101
GluI	GCNGC	1 cut(s)	32
GsuI	CTGGAG	1 cut(s)	154
HinfI	GANTC	1 cut(s)	137
Hpy188III	TCNNGA	3 cut(s)	20, 101, 144
Hpy99I	CGWCG	1 cut(s)	161
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4V	TGCA	2 cut(s)	34, 49
HpyF3I	CTNAG	1 cut(s)	18
Kzo9I	GATC	1 cut(s)	97
LpnPI	CCDG	6 cut(s)	5, 81, 129, 161, 184, 188
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	2 cut(s)	18, 112
MaeI	CTAG	1 cut(s)	101
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MboII	GAAGA	2 cut(s)	132, 161
MflI	RGATCY	1 cut(s)	97
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	1 cut(s)	23
MnlI	CCTC	2 cut(s)	27, 51
MspR9I	CCNGG	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	176
NdeII	GATC	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	97
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	1 cut(s)	97
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	1 cut(s)	108
SfaNI	GCATC	2 cut(s)	18, 112
SgeI	CNNG	9 cut(s)	25, 32, 75, 80, 113, 156, 183, 187, 188
Sse9I	AATT	1 cut(s)	23
SsiI	CCGC	2 cut(s)	7, 55
SspMI	CTAG	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	77
TasI	AATT	1 cut(s)	23
TfiI	GAWTC	1 cut(s)	137
TscAI	CASTG	2 cut(s)	51, 82
TseI	GCWGC	1 cut(s)	31
TspRI	CASTG	2 cut(s)	51, 82
XbaI	TCTAGA	1 cut(s)	100
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.