Rorug06G0121800

DDB1- and CUL4-associated factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0006022
Physical Location & Seq
Forward (+)
16763704 .. 16768262
4559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0121800.1

Sequence Viewer

Length: 1947 bp
ATGACTACAGATATGAGGGCCCTAGACTTCTGGGGTTACCCCCTCCTCAGTGTGTGCGCCGATGATGCATATGCTAACTGCAGCCAACCTATTACCTGCGGGAGTGTCAAAAGCAACATCTCTTACCCCTTTTGGGGAGCGAACCGACCCGAATACTGTGGCAAATCTGGGTTCGAGGTCACATGCCAAGACGATGTCCCGATGATCAGGATGCAGACAACCAATTTCAGAGTTCTTGACATGAGCAATAGCACTACTACACCAACTCCGACTGTGAAAGTTGCAAGGCAGGATTATTGGGGAACCCTCTGTCCTGAGAGTTATACTGAAACAAACCTCAACTTCTCTCTGTTTGATTACGCATCTGGGCCTCAAAACGTGTCTTTTTACTACGGATGCAGTTCGAATGCAACTTCAGTGTTGTCAAATGGATATAATTTTTCTAGTATCTCGCATGCATGCAATGCTACCGTCACAGTTACCTTTCTCACAGAGACGCAAATTGCTAAGCTTCTGGATGCATCTACCTTAGGCTCCTGTCAAGCTGTGGTTTTGGTTCCGGTGTCTGCGGCAGCTGCTGATGAGCTTGACAACAATCAAACATCAACTATCCAGAATGCGGTAGATGGTGGTTTTGAATTGAATGTGCAGAATGATGATACTGATCTTTGCAACAATTGCGTGGCCTCAGGAGGACTTTGTGGGCAAGACACTGCTAATGCTATGTTCATTTGCTATTGCCAGAATTTAAATTCAACAGACACATGTACTTCAAATTCATCAACTCCAAATCCGTCCGGTTCATCATCAGGTTCAATACCACGTGATTGGATCATAGGCATCTCGGCGGGTGTTTTTGGGATCATTGTACTAATTGTTTGCGGTATATGCATATCAAGGAAAAGTTCTTTGGTCTTCTTCTTCAAGAAACATGAAAGGGATGAGTTTGACATTGAAGCATTCATAAGAAACTGTGGATCGCTGAACCCAAAGCGGTACCGTTATTCAGATTTGAAGAAAATGACAAACGCATTCAAAGATCAAATTGGTAAAGGTGGATATGGAATAGTGTACAAAGGAAAGCTACCTGATGGACTCCTGGTGGCAGTGAAAGTGCTAAGTGAATTGAAGGGTAATGGAGAAGAATTCATCAATGAAGTTGCAAGCATTGGTAGAACTTCCCATGTCAATATAGTAAATCTTGCGGGATTCTGCTACGAAAGGGAGAAAAGAGCTCTCATATATGAGTACATGCCTAATGGATCACTAGATAAGTTTATGCATAATAAGCAAGGATCTTATGATGAAAAGTGCCACTTGGAATGGAAAACATTATCTGAAATTGCAGTTGGGATTGCTCGAGGACTAGAGTATTTACACCGTGGTTGCAACACAAGAATTTTACATTTCGACATAAAGCCACAGAACATTCTTCTAGATAAAGATTTTTGCCCAAAGATATCTAATTTCGGCCTTGCCAAACTATGCATGACAAAGGAAAGTATTGTATCGATGCTAGGGACAAGAGGAACTGCAGGATACATTGCACCAGAAGTGTTTAGTCGGAACTTTGGAGGAGTATCTCATAAGTCTGATGTTTATAGCTATGGGATGCTAGTTCTTGACATGGTTGGTGCAAGAAAGAATTTGGTTTCAGAAGTGTCTCATACCAGTGAAATGTTTCCACATTACATTTATAAAGATCTAGAGCTAGAGAAGAATGAGATTATATTTGGGGAAATAACAGAGGATGAGAGCAAAATAGCAAGAAAGATGATATTGATAAGTCTTGGGTGCATTCAGACCCTTCCATCTGATCGACCATCAATGAGCAAAGTGGTAGAGATGTTGGAAGGACCTCTTCATTCCCTGCCAATTCCACCAAAGCCTCTCTTATGTTCTGAAGAAGAATCTGCACCCATGTCCCAATCATCTGAAACAGGCTAA

Protein Analysis

648

Amino Acids

71.18

Weight (kDa)

5.33

Isoelectric Point (pI)

31.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 27 - 87 1.7e-14 Wall-associated receptor kinase galacturonan-binding
WAK_assoc PF14380 169 - 249 3.4e-15 Wall-associated receptor kinase C-terminal
PK_Tyr_Ser-Thr PF07714 345 - 617 2.3e-42 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 346 - 615 1.2e-42 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1698
Acc36I ACCTGC 1 cut(s) 104
Acc65I GGTACC 1 cut(s) 996
AccB1I GGYRCC 1 cut(s) 996
AciI CCGC 7 cut(s) 99, 569, 620, 848, 882, 994, 1205
AclWI GGATC 5 cut(s) 839, 869, 985, 1270, 1303
AcsI RAATTY 6 cut(s) 745, 751, 775, 1145, 1398, 1645
AcuI CTGAAG 2 cut(s) 399, 1923
AcvI CACGTG 1 cut(s) 824
AfaI GTAC 5 cut(s) 769, 870, 998, 1073, 1250
AfiI CCNNNNNNNGG 3 cut(s) 133, 134, 619
AflIII ACRYGT 2 cut(s) 378, 764
AjnI CCWGG 1 cut(s) 1098
AjuI GAANNNNNNNTTGG 4 cut(s) 893, 925, 1332, 1364
AloI GAACNNNNNNTCC 2 cut(s) 295, 327
AluBI AGCT 8 cut(s) 511, 545, 575, 586, 1084, 1235, 1605, 1711
AluI AGCT 8 cut(s) 511, 545, 575, 586, 1084, 1235, 1605, 1711
Alw21I GWGCWC 1 cut(s) 1237
Alw26I GTCTC 2 cut(s) 488, 1668
AlwI GGATC 5 cut(s) 839, 869, 985, 1270, 1303
AlwNI CAGNNNCTG 1 cut(s) 578
Ama87I CYCGRG 1 cut(s) 1359
AoxI GGCC 4 cut(s) 18, 368, 684, 1471
ApaI GGGCCC 1 cut(s) 22
ApeKI GCWGC 3 cut(s) 81, 572, 575
ApoI RAATTY 6 cut(s) 745, 751, 775, 1145, 1398, 1645
Asp700I GAANNNNTTC 1 cut(s) 1680
Asp718I GGTACC 1 cut(s) 996
AspLEI GCGC 1 cut(s) 59
AspS9I GGNCC 4 cut(s) 18, 19, 368, 1856
AsuII TTCGAA 1 cut(s) 404
AvaI CYCGRG 1 cut(s) 1359
AvaII GGWCC 1 cut(s) 1856
AxyI CCTNAGG 2 cut(s) 529, 688
BaeGI GKGCMC 1 cut(s) 22
BanI GGYRCC 1 cut(s) 996
BanII GRGCYC 2 cut(s) 22, 1237
BbrPI CACGTG 1 cut(s) 824
BbsI GAAGAC 1 cut(s) 907
Bbv12I GWGCWC 1 cut(s) 1237
BbvI GCAGC 3 cut(s) 93, 562, 584
BccI CCATC 4 cut(s) 620, 1085, 1819, 1831
BciT130I CCWGG 1 cut(s) 1100
BciVI GTATCC 1 cut(s) 1532
BclI TGATCA 1 cut(s) 204
BcoDI GTCTC 2 cut(s) 488, 1668
BfaI CTAG 9 cut(s) 23, 444, 1268, 1367, 1436, 1517, 1616, 1706, 1712
BfmI CTRYAG 3 cut(s) 6, 79, 1533
BfuAI ACCTGC 1 cut(s) 104
BfuI GTATCC 1 cut(s) 1532
BglII AGATCT 1 cut(s) 1702
BisI GCNGC 4 cut(s) 82, 570, 573, 576
BlpI GCTNAGC 1 cut(s) 507
BlsI GCNGC 4 cut(s) 83, 571, 574, 577
Bme1390I CCNGG 1 cut(s) 1100
Bme18I GGWCC 1 cut(s) 1856
BmeT110I CYCGRG 1 cut(s) 1359
BmgT120I GGNCC 4 cut(s) 18, 19, 368, 1856
BmiI GGNNCC 5 cut(s) 20, 304, 535, 558, 998
BmrFI CCNGG 1 cut(s) 1100
BmsI GCATC 9 cut(s) 55, 201, 371, 386, 508, 530, 849, 1503, 1602
BpiI GAAGAC 1 cut(s) 907
Bpu1102I GCTNAGC 1 cut(s) 507
Bpu14I TTCGAA 1 cut(s) 404
Bsa29I ATCGAT 1 cut(s) 1511
BsaAI YACGTR 1 cut(s) 824
BsaBI GATNNNNATC 1 cut(s) 663
BsaJI CCNNGG 1 cut(s) 1381
BsaWI WCCGGW 2 cut(s) 559, 797
BsaXI ACNNNNNCTCC 2 cut(s) 250, 280
Bsc4I CCNNNNNNNGG 3 cut(s) 133, 134, 619
Bse1I ACTGG 1 cut(s) 1671
Bse21I CCTNAGG 2 cut(s) 529, 688
Bse3DI GCAATG 2 cut(s) 469, 1542
Bse8I GATNNNNATC 1 cut(s) 663
BseBI CCWGG 1 cut(s) 1100
BseCI ATCGAT 1 cut(s) 1511
BseDI CCNNGG 1 cut(s) 1381
BseGI GGATG 6 cut(s) 216, 401, 523, 946, 1617, 1756
BseJI GATNNNNATC 1 cut(s) 663
BseLI CCNNNNNNNGG 3 cut(s) 133, 134, 619
BseMI GCAATG 2 cut(s) 469, 1542
BseMII CTCAG 3 cut(s) 61, 306, 702
BseNI ACTGG 1 cut(s) 1671
BseRI GAGGAG 2 cut(s) 35, 1590
BseSI GKGCMC 1 cut(s) 22
BseXI GCAGC 3 cut(s) 93, 562, 584
BsgI GTGCAG 2 cut(s) 668, 1899
BshFI GGCC 4 cut(s) 20, 370, 686, 1473
BshNI GGYRCC 1 cut(s) 996
BshVI ATCGAT 1 cut(s) 1511
BsiHKAI GWGCWC 1 cut(s) 1237
BsiHKCI CYCGRG 1 cut(s) 1359
BsiSI CCGG 2 cut(s) 560, 798
BslFI GGGAC 3 cut(s) 182, 1534, 1909
BslI CCNNNNNNNGG 3 cut(s) 133, 134, 619
BsmAI GTCTC 2 cut(s) 488, 1668
BsmBI CGTCTC 1 cut(s) 488
BsmFI GGGAC 3 cut(s) 182, 1534, 1909
BsmI GAATGC 5 cut(s) 412, 622, 959, 1031, 1797
BsnI GGCC 4 cut(s) 20, 370, 686, 1473
BsoBI CYCGRG 1 cut(s) 1359
Bsp119I TTCGAA 1 cut(s) 404
Bsp120I GGGCCC 1 cut(s) 18
Bsp1286I GDGCHC 2 cut(s) 22, 1237
Bsp1407I TGTACA 1 cut(s) 1071
Bsp1720I GCTNAGC 1 cut(s) 507
BspACI CCGC 7 cut(s) 99, 569, 620, 848, 882, 994, 1205
BspANI GGCC 4 cut(s) 20, 370, 686, 1473
BspCNI CTCAG 3 cut(s) 60, 307, 701
BspDI ATCGAT 1 cut(s) 1511
BspLI GGNNCC 5 cut(s) 20, 304, 535, 558, 998
BspMAI CTGCAG 2 cut(s) 83, 1537
BspMI ACCTGC 1 cut(s) 104
BspPI GGATC 5 cut(s) 839, 869, 985, 1270, 1303
BspT104I TTCGAA 1 cut(s) 404
BspT107I GGYRCC 1 cut(s) 996
BsrDI GCAATG 2 cut(s) 469, 1542
BsrGI TGTACA 1 cut(s) 1071
BsrI ACTGG 1 cut(s) 1671
BssECI CCNNGG 1 cut(s) 1381
Bst2UI CCWGG 1 cut(s) 1100
Bst4CI ACNGT 7 cut(s) 158, 274, 472, 478, 974, 1001, 1382
Bst6I CTCTTC 1 cut(s) 1866
BstAPI GCANNNNNTGC 2 cut(s) 464, 678
BstAUI TGTACA 1 cut(s) 1071
BstBAI YACGTR 1 cut(s) 824
BstBI TTCGAA 1 cut(s) 404
BstC8I GCNNGC 3 cut(s) 456, 460, 1165
BstDEI CTNAG 6 cut(s) 47, 315, 507, 529, 688, 1118
BstDSI CCRYGG 1 cut(s) 1381
BstEII GGTNACC 1 cut(s) 35
BstF5I GGATG 6 cut(s) 216, 401, 523, 946, 1617, 1756
BstHHI GCGC 1 cut(s) 59
BstMAI GTCTC 2 cut(s) 488, 1668
BstMWI GCNNNNNNNGC 6 cut(s) 65, 464, 575, 678, 888, 1288
BstNI CCWGG 1 cut(s) 1100
BstNSI RCATGY 5 cut(s) 186, 458, 462, 768, 1255
BstPI GGTNACC 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 1098
BstSFI CTRYAG 3 cut(s) 6, 79, 1533
BstSLI GKGCMC 1 cut(s) 22
BstV1I GCAGC 3 cut(s) 93, 562, 584
BstV2I GAAGAC 1 cut(s) 907
BstX2I RGATCY 2 cut(s) 1295, 1702
BstXI CCANNNNNNTGG 1 cut(s) 828
BstYI RGATCY 2 cut(s) 1295, 1702
Bsu15I ATCGAT 1 cut(s) 1511
Bsu36I CCTNAGG 2 cut(s) 529, 688
BsuI GTATCC 1 cut(s) 1532
BsuRI GGCC 4 cut(s) 20, 370, 686, 1473
BsuTUI ATCGAT 1 cut(s) 1511
BtgI CCRYGG 1 cut(s) 1381
BtsCI GGATG 6 cut(s) 216, 401, 523, 946, 1617, 1756
BtsI GCAGTG 2 cut(s) 711, 1113
BtsIMutI CAGTG 5 cut(s) 55, 423, 711, 1113, 1678
BveI ACCTGC 1 cut(s) 104
Cac8I GCNNGC 3 cut(s) 456, 460, 1165
CaiI CAGNNNCTG 1 cut(s) 578
CfoI GCGC 1 cut(s) 59
Cfr13I GGNCC 4 cut(s) 18, 19, 368, 1856
ClaI ATCGAT 1 cut(s) 1511
CseI GACGC 1 cut(s) 505
Csp6I GTAC 5 cut(s) 768, 869, 997, 1072, 1249
CviQI GTAC 5 cut(s) 768, 869, 997, 1072, 1249
DdeI CTNAG 6 cut(s) 47, 315, 507, 529, 688, 1118
DraI TTTAAA 1 cut(s) 750
Eam1104I CTCTTC 1 cut(s) 1866
EarI CTCTTC 1 cut(s) 1866
Ecl136II GAGCTC 1 cut(s) 1235
Eco24I GRGCYC 2 cut(s) 22, 1237
Eco32I GATATC 1 cut(s) 1461
Eco47I GGWCC 1 cut(s) 1856
Eco53kI GAGCTC 1 cut(s) 1235
Eco57I CTGAAG 2 cut(s) 399, 1923
Eco72I CACGTG 1 cut(s) 824
Eco81I CCTNAGG 2 cut(s) 529, 688
Eco88I CYCGRG 1 cut(s) 1359
Eco91I GGTNACC 1 cut(s) 35
EcoICRI GAGCTC 1 cut(s) 1235
EcoO109I RGGNCCY 3 cut(s) 18, 19, 1856
EcoO65I GGTNACC 1 cut(s) 35
EcoRI GAATTC 1 cut(s) 1145
EcoRII CCWGG 1 cut(s) 1098
EcoRV GATATC 1 cut(s) 1461
EcoT22I ATGCAT 6 cut(s) 70, 460, 523, 893, 1284, 1490
EcoT38I GRGCYC 2 cut(s) 22, 1237
Esp3I CGTCTC 1 cut(s) 488
FalI AAGNNNNNCTT 6 cut(s) 1301, 1333, 1845, 1877, 1877, 1909
FaqI GGGAC 3 cut(s) 182, 1534, 1909
FauI CCCGC 3 cut(s) 92, 841, 1198
FauNDI CATATG 1 cut(s) 70
FbaI TGATCA 1 cut(s) 204
Fnu4HI GCNGC 4 cut(s) 82, 570, 573, 576
FokI GGATG 6 cut(s) 223, 408, 530, 953, 1624, 1763
FriOI GRGCYC 2 cut(s) 22, 1237
Fsp4HI GCNGC 4 cut(s) 82, 570, 573, 576
FspBI CTAG 9 cut(s) 23, 444, 1268, 1367, 1436, 1517, 1616, 1706, 1712
GlaI GCGC 1 cut(s) 58
GluI GCNGC 4 cut(s) 82, 570, 573, 576
HaeIII GGCC 4 cut(s) 20, 370, 686, 1473
HapII CCGG 2 cut(s) 560, 798
HgaI GACGC 1 cut(s) 505
HhaI GCGC 1 cut(s) 59
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HindIII AAGCTT 1 cut(s) 509
HinfI GANTC 3 cut(s) 1095, 1209, 1910
HpaII CCGG 2 cut(s) 560, 798
Hpy166II GTNNAC 1 cut(s) 1072
Hpy8I GTNNAC 1 cut(s) 1072
HpyAV CCTTC 3 cut(s) 1123, 1817, 1847
HpyCH4III ACNGT 7 cut(s) 158, 274, 472, 478, 974, 1001, 1382
HpyCH4IV ACGT 2 cut(s) 378, 823
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 464, 575, 678, 888, 1288
HpyF3I CTNAG 6 cut(s) 47, 315, 507, 529, 688, 1118
HpySE526I ACGT 2 cut(s) 378, 823
HspAI GCGC 1 cut(s) 57
KpnI GGTACC 1 cut(s) 1000
Ksp22I TGATCA 1 cut(s) 204
LmnI GCTCC 2 cut(s) 137, 539
Lsp1109I GCAGC 3 cut(s) 93, 562, 584
LweI GCATC 9 cut(s) 55, 201, 371, 386, 508, 530, 849, 1503, 1602
MaeI CTAG 9 cut(s) 23, 444, 1268, 1367, 1436, 1517, 1616, 1706, 1712
MaeII ACGT 2 cut(s) 378, 823
MaeIII GTNAC 4 cut(s) 35, 178, 472, 478
MfeI CAATTG 1 cut(s) 676
MflI RGATCY 2 cut(s) 1295, 1702
MhlI GDGCHC 2 cut(s) 22, 1237
MlyI GAGTC 1 cut(s) 1089
MmeI TCCRAC 3 cut(s) 293, 1544, 1830
Mph1103I ATGCAT 6 cut(s) 70, 460, 523, 893, 1284, 1490
MroXI GAANNNNTTC 1 cut(s) 1680
MseI TTAA 1 cut(s) 749
MslI CAYNNNNRTG 1 cut(s) 1671
MspA1I CMGCKG 1 cut(s) 575
MspI CCGG 2 cut(s) 560, 798
MspR9I CCNGG 1 cut(s) 1100
MunI CAATTG 1 cut(s) 676
Mva1269I GAATGC 5 cut(s) 412, 622, 959, 1031, 1797
MvaI CCWGG 1 cut(s) 1100
MwoI GCNNNNNNNGC 6 cut(s) 65, 464, 575, 678, 888, 1288
NdeI CATATG 1 cut(s) 70
NlaIV GGNNCC 5 cut(s) 20, 304, 535, 558, 998
NmeAIII GCCGAG 1 cut(s) 824
NmuCI GTSAC 2 cut(s) 178, 472
NsiI ATGCAT 6 cut(s) 70, 460, 523, 893, 1284, 1490
NspI RCATGY 5 cut(s) 186, 458, 462, 768, 1255
NspV TTCGAA 1 cut(s) 404
PaeI GCATGC 2 cut(s) 458, 462
PaeR7I CTCGAG 1 cut(s) 1359
PciI ACATGT 1 cut(s) 764
PctI GAATGC 5 cut(s) 412, 622, 959, 1031, 1797
PdmI GAANNNNTTC 1 cut(s) 1680
PfeI GAWTC 2 cut(s) 1209, 1910
PflFI GACNNNGTC 1 cut(s) 194
PkrI GCNGC 4 cut(s) 83, 571, 574, 577
PleI GAGTC 1 cut(s) 1089
PmaCI CACGTG 1 cut(s) 824
PmlI CACGTG 1 cut(s) 824
PpsI GAGTC 1 cut(s) 1089
Ppu21I YACGTR 1 cut(s) 824
PpuMI RGGWCCY 1 cut(s) 1856
PscI ACATGT 1 cut(s) 764
PsiI TTATAA 1 cut(s) 1698
Psp124BI GAGCTC 1 cut(s) 1237
Psp5II RGGWCCY 1 cut(s) 1856
Psp6I CCWGG 1 cut(s) 1098
PspCI CACGTG 1 cut(s) 824
PspEI GGTNACC 1 cut(s) 35
PspGI CCWGG 1 cut(s) 1098
PspN4I GGNNCC 5 cut(s) 20, 304, 535, 558, 998
PspOMI GGGCCC 1 cut(s) 18
PspPI GGNCC 4 cut(s) 18, 19, 368, 1856
PspPPI RGGWCCY 1 cut(s) 1856
PspXI VCTCGAGB 1 cut(s) 1359
PstI CTGCAG 2 cut(s) 83, 1537
PstNI CAGNNNCTG 1 cut(s) 578
PsuI RGATCY 2 cut(s) 1295, 1702
PsyI GACNNNGTC 1 cut(s) 194
PvuII CAGCTG 1 cut(s) 575
RsaI GTAC 5 cut(s) 769, 870, 998, 1073, 1250
RsaNI GTAC 5 cut(s) 768, 869, 997, 1072, 1249
RseI CAYNNNNRTG 1 cut(s) 1671
SacI GAGCTC 1 cut(s) 1237
SaqAI TTAA 1 cut(s) 749
SatI GCNGC 4 cut(s) 82, 570, 573, 576
Sau96I GGNCC 4 cut(s) 18, 19, 368, 1856
SchI GAGTC 1 cut(s) 1089
ScrFI CCNGG 1 cut(s) 1100
SduI GDGCHC 2 cut(s) 22, 1237
SfaNI GCATC 9 cut(s) 55, 201, 371, 386, 508, 530, 849, 1503, 1602
SfcI CTRYAG 3 cut(s) 6, 79, 1533
Sfr274I CTCGAG 1 cut(s) 1359
SfuI TTCGAA 1 cut(s) 404
SinI GGWCC 1 cut(s) 1856
SlaI CTCGAG 1 cut(s) 1359
SmiI ATTTAAAT 1 cut(s) 750
SmiMI CAYNNNNRTG 1 cut(s) 1671
SmlI CTYRAG 1 cut(s) 1359
SmoI CTYRAG 1 cut(s) 1359
SphI GCATGC 2 cut(s) 458, 462
SsiI CCGC 7 cut(s) 99, 569, 620, 848, 882, 994, 1205
SspMI CTAG 9 cut(s) 23, 444, 1268, 1367, 1436, 1517, 1616, 1706, 1712
SstI GAGCTC 1 cut(s) 1237
StyD4I CCNGG 1 cut(s) 1098
SwaI ATTTAAAT 1 cut(s) 750
TaaI ACNGT 7 cut(s) 158, 274, 472, 478, 974, 1001, 1382
TaiI ACGT 2 cut(s) 381, 826
TaqI TCGA 6 cut(s) 174, 404, 1360, 1410, 1511, 1819
TatI WGTACW 4 cut(s) 767, 868, 1071, 1248
TauI GCSGC 1 cut(s) 572
TfiI GAWTC 2 cut(s) 1209, 1910
Tru1I TTAA 1 cut(s) 749
Tru9I TTAA 1 cut(s) 749
TscAI CASTG 5 cut(s) 55, 423, 718, 1113, 1678
TseFI GTSAC 2 cut(s) 178, 472
TseI GCWGC 3 cut(s) 81, 572, 575
Tsp45I GTSAC 2 cut(s) 178, 472
TspDTI ATGAA 9 cut(s) 718, 768, 792, 948, 952, 1138, 1170, 1320, 1853
TspGWI ACGGA 2 cut(s) 408, 783
TspRI CASTG 5 cut(s) 55, 423, 718, 1113, 1678
Tth111I GACNNNGTC 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 1856
XapI RAATTY 6 cut(s) 745, 751, 775, 1145, 1398, 1645
XbaI TCTAGA 2 cut(s) 1435, 1705
XceI RCATGY 5 cut(s) 186, 458, 462, 768, 1255
XhoI CTCGAG 1 cut(s) 1359
XmnI GAANNNNTTC 1 cut(s) 1680
XspI CTAG 9 cut(s) 23, 444, 1268, 1367, 1436, 1517, 1616, 1706, 1712
Zsp2I ATGCAT 6 cut(s) 70, 460, 523, 893, 1284, 1490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.