DDB1- and CUL4-associated factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G35140 AT4G35140 AT4G38480 AT4G38480 |
| fragaria_vesca | FvH4_2g15750 FvH4_2g15750 FvH4_2g15750 |
| malus_domestica | MD05G1126500.v1.1 |
| prunus_persica | Prupe.8G169900_v2.0.a1 Prupe.8G169900_v2.0.a1 Prupe.8G169900_v2.0.a1 |
| pyrus_communis | pycom05g12230 |
| rosa_chinensis | RchiOBHm_Chr6g0279061 RchiOBHm_Chr6g0279071 |
| rosa_laevigata | RLG00000013169 |
| rosa_multiflora | Rmu_co8384295.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00189170 |
| rosa_rugosa | Rorug06G0121800 Rorug06G0121900 Rorug06G0122000 |
| rosa_samantha | Rh6AG230800 Rh6BG235600 Rh6CG237700 Rh6DG229300 |
| rosa_wichuraiana | Rw0G017050 Rw0G021130 Rw6G020200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 352, 632 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 35 |
| Acc36I | ACCTGC | 2 cut(s) | 352, 632 |
| AccBSI | CCGCTC | 2 cut(s) | 388, 1056 |
| AccII | CGCG | 1 cut(s) | 1457 |
| AciI | CCGC | 8 cut(s) | 75, 226, 388, 717, 1056, 1072, 1291, 1457 |
| AclWI | GGATC | 1 cut(s) | 120 |
| AcoI | YGGCCR | 3 cut(s) | 64, 444, 709 |
| AcsI | RAATTY | 3 cut(s) | 82, 378, 625 |
| AcuI | CTGAAG | 1 cut(s) | 1422 |
| AcvI | CACGTG | 1 cut(s) | 546 |
| AfaI | GTAC | 2 cut(s) | 756, 1289 |
| AgsI | TTSAA | 3 cut(s) | 88, 184, 1193 |
| AjnI | CCWGG | 2 cut(s) | 454, 1464 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1364, 1396 |
| AluBI | AGCT | 9 cut(s) | 70, 145, 180, 260, 265, 434, 1105, 1235, 1402 |
| AluI | AGCT | 9 cut(s) | 70, 145, 180, 260, 265, 434, 1105, 1235, 1402 |
| Alw21I | GWGCWC | 2 cut(s) | 123, 436 |
| Alw26I | GTCTC | 6 cut(s) | 361, 811, 942, 998, 1158, 1446 |
| AlwI | GGATC | 1 cut(s) | 120 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 647 |
| Ama87I | CYCGRG | 1 cut(s) | 840 |
| AoxI | GGCC | 7 cut(s) | 64, 427, 444, 709, 777, 1031, 1221 |
| ApeKI | GCWGC | 3 cut(s) | 91, 350, 527 |
| ApoI | RAATTY | 3 cut(s) | 82, 378, 625 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 789, 821 |
| AspLEI | GCGC | 1 cut(s) | 96 |
| AspS9I | GGNCC | 4 cut(s) | 427, 857, 1031, 1390 |
| AsuHPI | GGTGA | 4 cut(s) | 206, 376, 497, 929 |
| AvaI | CYCGRG | 1 cut(s) | 840 |
| AvaII | GGWCC | 2 cut(s) | 857, 1390 |
| AxyI | CCTNAGG | 1 cut(s) | 1305 |
| BalI | TGGCCA | 1 cut(s) | 711 |
| BanII | GRGCYC | 2 cut(s) | 215, 436 |
| BauI | CACGAG | 2 cut(s) | 7, 116 |
| BbrPI | CACGTG | 1 cut(s) | 546 |
| Bbv12I | GWGCWC | 2 cut(s) | 123, 436 |
| BbvI | GCAGC | 3 cut(s) | 103, 337, 514 |
| BccI | CCATC | 9 cut(s) | 185, 350, 485, 589, 593, 597, 686, 880, 949 |
| BceAI | ACGGC | 1 cut(s) | 431 |
| BciT130I | CCWGG | 2 cut(s) | 456, 1466 |
| BclI | TGATCA | 1 cut(s) | 919 |
| BcoDI | GTCTC | 6 cut(s) | 361, 811, 942, 998, 1158, 1446 |
| BfaI | CTAG | 4 cut(s) | 146, 383, 1275, 1397 |
| BfoI | RGCGCY | 1 cut(s) | 97 |
| BfuAI | ACCTGC | 2 cut(s) | 352, 632 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 102 |
| BisI | GCNGC | 4 cut(s) | 92, 351, 528, 1458 |
| BlpI | GCTNAGC | 1 cut(s) | 261 |
| BlsI | GCNGC | 4 cut(s) | 93, 352, 529, 1459 |
| Bme1390I | CCNGG | 2 cut(s) | 456, 1466 |
| Bme18I | GGWCC | 2 cut(s) | 857, 1390 |
| BmeT110I | CYCGRG | 1 cut(s) | 840 |
| BmgT120I | GGNCC | 4 cut(s) | 427, 857, 1031, 1390 |
| BmiI | GGNNCC | 2 cut(s) | 858, 1391 |
| BmrFI | CCNGG | 2 cut(s) | 456, 1466 |
| BmrI | ACTGGG | 2 cut(s) | 261, 697 |
| BmsI | GCATC | 5 cut(s) | 22, 514, 889, 1155, 1308 |
| BmuI | ACTGGG | 2 cut(s) | 261, 697 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 358, 390 |
| BpmI | CTGGAG | 1 cut(s) | 864 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 261 |
| BpuEI | CTTGAG | 1 cut(s) | 960 |
| BsaAI | YACGTR | 1 cut(s) | 546 |
| BsaJI | CCNNGG | 2 cut(s) | 455, 1218 |
| BsaWI | WCCGGW | 1 cut(s) | 1382 |
| Bse118I | RCCGGY | 1 cut(s) | 101 |
| Bse1I | ACTGG | 3 cut(s) | 256, 692, 881 |
| Bse21I | CCTNAGG | 1 cut(s) | 1305 |
| BseBI | CCWGG | 2 cut(s) | 456, 1466 |
| BseDI | CCNNGG | 2 cut(s) | 455, 1218 |
| BseGI | GGATG | 9 cut(s) | 167, 581, 585, 697, 872, 958, 1156, 1290, 1474 |
| BseMII | CTCAG | 6 cut(s) | 99, 275, 506, 798, 1259, 1319 |
| BseNI | ACTGG | 3 cut(s) | 256, 692, 881 |
| BseRI | GAGGAG | 1 cut(s) | 583 |
| BseXI | GCAGC | 3 cut(s) | 103, 337, 514 |
| Bsh1236I | CGCG | 1 cut(s) | 1457 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1387 |
| BshFI | GGCC | 7 cut(s) | 66, 429, 446, 711, 779, 1033, 1223 |
| BsiEI | CGRYCG | 1 cut(s) | 1387 |
| BsiHKAI | GWGCWC | 2 cut(s) | 123, 436 |
| BsiHKCI | CYCGRG | 1 cut(s) | 840 |
| BsiSI | CCGG | 2 cut(s) | 102, 1383 |
| BslFI | GGGAC | 4 cut(s) | 405, 870, 1285, 1403 |
| BsmAI | GTCTC | 6 cut(s) | 361, 811, 942, 998, 1158, 1446 |
| BsmBI | CGTCTC | 2 cut(s) | 361, 1446 |
| BsmFI | GGGAC | 4 cut(s) | 405, 870, 1285, 1403 |
| BsnI | GGCC | 7 cut(s) | 66, 429, 446, 711, 779, 1033, 1223 |
| BsoBI | CYCGRG | 1 cut(s) | 840 |
| Bsp1286I | GDGCHC | 3 cut(s) | 123, 215, 436 |
| Bsp1407I | TGTACA | 1 cut(s) | 754 |
| Bsp143I | GATC | 6 cut(s) | 112, 309, 328, 511, 919, 1357 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 261 |
| BspACI | CCGC | 8 cut(s) | 75, 226, 388, 717, 1056, 1072, 1291, 1457 |
| BspANI | GGCC | 7 cut(s) | 66, 429, 446, 711, 779, 1033, 1223 |
| BspCNI | CTCAG | 6 cut(s) | 100, 274, 507, 797, 1258, 1318 |
| BspFNI | CGCG | 1 cut(s) | 1457 |
| BspLI | GGNNCC | 2 cut(s) | 858, 1391 |
| BspMI | ACCTGC | 2 cut(s) | 352, 632 |
| BspPI | GGATC | 1 cut(s) | 120 |
| BsrBI | CCGCTC | 2 cut(s) | 388, 1056 |
| BsrFI | RCCGGY | 1 cut(s) | 101 |
| BsrGI | TGTACA | 1 cut(s) | 754 |
| BsrI | ACTGG | 3 cut(s) | 256, 692, 881 |
| BssAI | RCCGGY | 1 cut(s) | 101 |
| BssECI | CCNNGG | 2 cut(s) | 455, 1218 |
| BssMI | GATC | 6 cut(s) | 112, 309, 328, 511, 919, 1357 |
| BssSI | CACGAG | 2 cut(s) | 7, 116 |
| BssT1I | CCWWGG | 1 cut(s) | 1218 |
| Bst2BI | CACGAG | 2 cut(s) | 7, 116 |
| Bst2UI | CCWGG | 2 cut(s) | 456, 1466 |
| Bst4CI | ACNGT | 4 cut(s) | 175, 1001, 1009, 1171 |
| BstAUI | TGTACA | 1 cut(s) | 754 |
| BstBAI | YACGTR | 1 cut(s) | 546 |
| BstC8I | GCNNGC | 3 cut(s) | 68, 103, 1462 |
| BstDEI | CTNAG | 6 cut(s) | 108, 261, 515, 784, 1245, 1305 |
| BstF5I | GGATG | 9 cut(s) | 167, 581, 585, 697, 872, 958, 1156, 1290, 1474 |
| BstFNI | CGCG | 1 cut(s) | 1457 |
| BstH2I | RGCGCY | 1 cut(s) | 97 |
| BstHHI | GCGC | 1 cut(s) | 96 |
| BstKTI | GATC | 6 cut(s) | 115, 312, 331, 514, 922, 1360 |
| BstMAI | GTCTC | 6 cut(s) | 361, 811, 942, 998, 1158, 1446 |
| BstMBI | GATC | 6 cut(s) | 112, 309, 328, 511, 919, 1357 |
| BstMCI | CGRYCG | 1 cut(s) | 1387 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 102, 151, 1359 |
| BstNI | CCWGG | 2 cut(s) | 456, 1466 |
| BstNSI | RCATGY | 2 cut(s) | 580, 1136 |
| BstSCI | CCNGG | 2 cut(s) | 454, 1464 |
| BstUI | CGCG | 1 cut(s) | 1457 |
| BstV1I | GCAGC | 3 cut(s) | 103, 337, 514 |
| BstX2I | RGATCY | 1 cut(s) | 112 |
| BstYI | RGATCY | 1 cut(s) | 112 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1305 |
| BsuRI | GGCC | 7 cut(s) | 66, 429, 446, 711, 779, 1033, 1223 |
| BtgZI | GCGATG | 1 cut(s) | 1458 |
| BtsCI | GGATG | 9 cut(s) | 167, 581, 585, 697, 872, 958, 1156, 1290, 1474 |
| BtsI | GCAGTG | 2 cut(s) | 642, 1331 |
| BtsIMutI | CAGTG | 4 cut(s) | 171, 642, 932, 1331 |
| BveI | ACCTGC | 2 cut(s) | 352, 632 |
| Cac8I | GCNNGC | 3 cut(s) | 68, 103, 1462 |
| CaiI | CAGNNNCTG | 1 cut(s) | 647 |
| CfoI | GCGC | 1 cut(s) | 96 |
| Cfr10I | RCCGGY | 1 cut(s) | 101 |
| Cfr13I | GGNCC | 4 cut(s) | 427, 857, 1031, 1390 |
| CseI | GACGC | 1 cut(s) | 1463 |
| Csp6I | GTAC | 2 cut(s) | 755, 1288 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 723, 758, 1156, 1191 |
| CviAII | CATG | 3 cut(s) | 313, 577, 1133 |
| CviQI | GTAC | 2 cut(s) | 755, 1288 |
| DdeI | CTNAG | 6 cut(s) | 108, 261, 515, 784, 1245, 1305 |
| DpnI | GATC | 6 cut(s) | 114, 311, 330, 513, 921, 1359 |
| DpnII | GATC | 6 cut(s) | 112, 309, 328, 511, 919, 1357 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 35 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 35 |
| EaeI | YGGCCR | 3 cut(s) | 64, 444, 709 |
| EciI | GGCGGA | 2 cut(s) | 64, 1087 |
| Ecl136II | GAGCTC | 1 cut(s) | 434 |
| Eco130I | CCWWGG | 1 cut(s) | 1218 |
| Eco24I | GRGCYC | 2 cut(s) | 215, 436 |
| Eco32I | GATATC | 1 cut(s) | 673 |
| Eco47I | GGWCC | 2 cut(s) | 857, 1390 |
| Eco53kI | GAGCTC | 1 cut(s) | 434 |
| Eco57I | CTGAAG | 1 cut(s) | 1422 |
| Eco72I | CACGTG | 1 cut(s) | 546 |
| Eco81I | CCTNAGG | 1 cut(s) | 1305 |
| Eco88I | CYCGRG | 1 cut(s) | 840 |
| EcoICRI | GAGCTC | 1 cut(s) | 434 |
| EcoO109I | RGGNCCY | 2 cut(s) | 857, 1390 |
| EcoRII | CCWGG | 2 cut(s) | 454, 1464 |
| EcoRV | GATATC | 1 cut(s) | 673 |
| EcoT14I | CCWWGG | 1 cut(s) | 1218 |
| EcoT38I | GRGCYC | 2 cut(s) | 215, 436 |
| ErhI | CCWWGG | 1 cut(s) | 1218 |
| Esp3I | CGTCTC | 2 cut(s) | 361, 1446 |
| FaeI | CATG | 3 cut(s) | 316, 580, 1136 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 249, 281 |
| FaqI | GGGAC | 4 cut(s) | 405, 870, 1285, 1403 |
| FatI | CATG | 3 cut(s) | 312, 576, 1132 |
| FauI | CCCGC | 4 cut(s) | 219, 381, 724, 1049 |
| FauNDI | CATATG | 3 cut(s) | 423, 993, 1082 |
| FbaI | TGATCA | 1 cut(s) | 919 |
| Fnu4HI | GCNGC | 4 cut(s) | 92, 351, 528, 1458 |
| FokI | GGATG | 9 cut(s) | 174, 568, 572, 704, 859, 965, 1143, 1297, 1481 |
| FriOI | GRGCYC | 2 cut(s) | 215, 436 |
| Fsp4HI | GCNGC | 4 cut(s) | 92, 351, 528, 1458 |
| FspBI | CTAG | 4 cut(s) | 146, 383, 1275, 1397 |
| GlaI | GCGC | 1 cut(s) | 95 |
| GluI | GCNGC | 4 cut(s) | 92, 351, 528, 1458 |
| GsuI | CTGGAG | 1 cut(s) | 864 |
| HaeII | RGCGCY | 1 cut(s) | 97 |
| HaeIII | GGCC | 7 cut(s) | 66, 429, 446, 711, 779, 1033, 1223 |
| HapII | CCGG | 2 cut(s) | 102, 1383 |
| HgaI | GACGC | 1 cut(s) | 1463 |
| HhaI | GCGC | 1 cut(s) | 96 |
| Hin1II | CATG | 3 cut(s) | 316, 580, 1136 |
| Hin6I | GCGC | 1 cut(s) | 94 |
| HinP1I | GCGC | 1 cut(s) | 94 |
| HindIII | AAGCTT | 1 cut(s) | 178 |
| HinfI | GANTC | 5 cut(s) | 460, 1108, 1151, 1213, 1433 |
| HpaII | CCGG | 2 cut(s) | 102, 1383 |
| HphI | GGTGA | 4 cut(s) | 206, 376, 497, 929 |
| Hpy166II | GTNNAC | 3 cut(s) | 169, 1021, 1212 |
| Hpy188I | TCNGA | 9 cut(s) | 109, 125, 141, 217, 516, 703, 787, 1063, 1248 |
| Hpy188III | TCNNGA | 7 cut(s) | 383, 557, 842, 977, 1307, 1388, 1397 |
| Hpy8I | GTNNAC | 3 cut(s) | 169, 1021, 1212 |
| HpyAV | CCTTC | 4 cut(s) | 790, 1264, 1403, 1442 |
| HpyCH4III | ACNGT | 4 cut(s) | 175, 1001, 1009, 1171 |
| HpyCH4IV | ACGT | 2 cut(s) | 370, 545 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 102, 151, 1359 |
| HpyF3I | CTNAG | 6 cut(s) | 108, 261, 515, 784, 1245, 1305 |
| HpySE526I | ACGT | 2 cut(s) | 370, 545 |
| Hsp92II | CATG | 3 cut(s) | 316, 580, 1136 |
| HspAI | GCGC | 1 cut(s) | 94 |
| KroI | GCCGGC | 1 cut(s) | 101 |
| KroNI | GCCGGC | 1 cut(s) | 103 |
| Ksp22I | TGATCA | 1 cut(s) | 919 |
| Kzo9I | GATC | 6 cut(s) | 112, 309, 328, 511, 919, 1357 |
| LmnI | GCTCC | 2 cut(s) | 126, 1102 |
| Lsp1109I | GCAGC | 3 cut(s) | 103, 337, 514 |
| LweI | GCATC | 5 cut(s) | 22, 514, 889, 1155, 1308 |
| MaeI | CTAG | 4 cut(s) | 146, 383, 1275, 1397 |
| MaeII | ACGT | 2 cut(s) | 370, 545 |
| MaeIII | GTNAC | 2 cut(s) | 340, 572 |
| MalI | GATC | 6 cut(s) | 114, 311, 330, 513, 921, 1359 |
| MbiI | CCGCTC | 2 cut(s) | 388, 1056 |
| MboI | GATC | 6 cut(s) | 112, 309, 328, 511, 919, 1357 |
| MboII | GAAGA | 5 cut(s) | 500, 1099, 1273, 1371, 1428 |
| MfeI | CAATTG | 3 cut(s) | 336, 600, 606 |
| MflI | RGATCY | 1 cut(s) | 112 |
| MhlI | GDGCHC | 3 cut(s) | 123, 215, 436 |
| MlsI | TGGCCA | 1 cut(s) | 711 |
| MluNI | TGGCCA | 1 cut(s) | 711 |
| MlyI | GAGTC | 3 cut(s) | 469, 1160, 1207 |
| Mox20I | TGGCCA | 1 cut(s) | 711 |
| MroNI | GCCGGC | 1 cut(s) | 101 |
| MscI | TGGCCA | 1 cut(s) | 711 |
| MslI | CAYNNNNRTG | 3 cut(s) | 594, 927, 1205 |
| Msp20I | TGGCCA | 1 cut(s) | 711 |
| MspI | CCGG | 2 cut(s) | 102, 1383 |
| MspR9I | CCNGG | 2 cut(s) | 456, 1466 |
| MunI | CAATTG | 3 cut(s) | 336, 600, 606 |
| MvaI | CCWGG | 2 cut(s) | 456, 1466 |
| MvnI | CGCG | 1 cut(s) | 1457 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 102, 151, 1359 |
| NaeI | GCCGGC | 1 cut(s) | 103 |
| NdeI | CATATG | 3 cut(s) | 423, 993, 1082 |
| NdeII | GATC | 6 cut(s) | 112, 309, 328, 511, 919, 1357 |
| NgoMIV | GCCGGC | 1 cut(s) | 101 |
| NlaIII | CATG | 3 cut(s) | 316, 580, 1136 |
| NlaIV | GGNNCC | 2 cut(s) | 858, 1391 |
| NmeAIII | GCCGAG | 1 cut(s) | 455 |
| NspI | RCATGY | 2 cut(s) | 580, 1136 |
| PaeR7I | CTCGAG | 1 cut(s) | 840 |
| PaqCI | CACCTGC | 2 cut(s) | 352, 632 |
| PdiI | GCCGGC | 1 cut(s) | 103 |
| PfeI | GAWTC | 2 cut(s) | 1108, 1433 |
| PkrI | GCNGC | 4 cut(s) | 93, 352, 529, 1459 |
| PleI | GAGTC | 3 cut(s) | 468, 1159, 1207 |
| PmaCI | CACGTG | 1 cut(s) | 546 |
| PmlI | CACGTG | 1 cut(s) | 546 |
| PpsI | GAGTC | 3 cut(s) | 468, 1159, 1207 |
| Ppu21I | YACGTR | 1 cut(s) | 546 |
| PpuMI | RGGWCCY | 2 cut(s) | 857, 1390 |
| Psp124BI | GAGCTC | 1 cut(s) | 436 |
| Psp5II | RGGWCCY | 2 cut(s) | 857, 1390 |
| Psp6I | CCWGG | 2 cut(s) | 454, 1464 |
| PspCI | CACGTG | 1 cut(s) | 546 |
| PspGI | CCWGG | 2 cut(s) | 454, 1464 |
| PspN4I | GGNNCC | 2 cut(s) | 858, 1391 |
| PspPI | GGNCC | 4 cut(s) | 427, 857, 1031, 1390 |
| PspPPI | RGGWCCY | 2 cut(s) | 857, 1390 |
| PstNI | CAGNNNCTG | 1 cut(s) | 647 |
| PsuI | RGATCY | 1 cut(s) | 112 |
| RsaI | GTAC | 2 cut(s) | 756, 1289 |
| RsaNI | GTAC | 2 cut(s) | 755, 1288 |
| RseI | CAYNNNNRTG | 3 cut(s) | 594, 927, 1205 |
| SacI | GAGCTC | 1 cut(s) | 436 |
| SatI | GCNGC | 4 cut(s) | 92, 351, 528, 1458 |
| Sau3AI | GATC | 6 cut(s) | 112, 309, 328, 511, 919, 1357 |
| Sau96I | GGNCC | 4 cut(s) | 427, 857, 1031, 1390 |
| SchI | GAGTC | 3 cut(s) | 469, 1160, 1207 |
| ScrFI | CCNGG | 2 cut(s) | 456, 1466 |
| SduI | GDGCHC | 3 cut(s) | 123, 215, 436 |
| SfaNI | GCATC | 5 cut(s) | 22, 514, 889, 1155, 1308 |
| Sfr274I | CTCGAG | 1 cut(s) | 840 |
| SinI | GGWCC | 2 cut(s) | 857, 1390 |
| SlaI | CTCGAG | 1 cut(s) | 840 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 594, 927, 1205 |
| SmlI | CTYRAG | 2 cut(s) | 840, 975 |
| SmoI | CTYRAG | 2 cut(s) | 840, 975 |
| SsiI | CCGC | 8 cut(s) | 75, 226, 388, 717, 1056, 1072, 1291, 1457 |
| SspMI | CTAG | 4 cut(s) | 146, 383, 1275, 1397 |
| SstI | GAGCTC | 1 cut(s) | 436 |
| StyD4I | CCNGG | 2 cut(s) | 454, 1464 |
| StyI | CCWWGG | 1 cut(s) | 1218 |
| TaaI | ACNGT | 4 cut(s) | 175, 1001, 1009, 1171 |
| TaiI | ACGT | 2 cut(s) | 373, 548 |
| TaqI | TCGA | 5 cut(s) | 16, 27, 841, 1149, 1254 |
| TatI | WGTACW | 1 cut(s) | 754 |
| TauI | GCSGC | 1 cut(s) | 1460 |
| TfiI | GAWTC | 2 cut(s) | 1108, 1433 |
| TscAI | CASTG | 4 cut(s) | 178, 642, 932, 1338 |
| TseI | GCWGC | 3 cut(s) | 91, 350, 527 |
| TspDTI | ATGAA | 8 cut(s) | 17, 396, 666, 814, 1010, 1069, 1401, 1461 |
| TspGWI | ACGGA | 1 cut(s) | 665 |
| TspRI | CASTG | 4 cut(s) | 178, 642, 932, 1338 |
| VpaK11BI | GGWCC | 2 cut(s) | 857, 1390 |
| XapI | RAATTY | 3 cut(s) | 82, 378, 625 |
| XbaI | TCTAGA | 2 cut(s) | 382, 1396 |
| XceI | RCATGY | 2 cut(s) | 580, 1136 |
| XhoI | CTCGAG | 1 cut(s) | 840 |
| XspI | CTAG | 4 cut(s) | 146, 383, 1275, 1397 |