Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00752

Orthogroup ID

OG0006022

Physical Location & Seq

Genomic Coordinates Reverse (-)

31901 .. 33548

Gene Structure 1648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G017050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGGATTAGGACCTAATCCTCCCATTTCCATGAGTAGTGATACAAGTGAAATGAGTGATGATCACCAGTCTGAAGAATCTCCATCATCCATGGATACTGATGAAAAAACTGTTCCTCAAGTTTACAAGGGTCACTTGAACTCTGAGACAGTGAAAGGTGTGAACTTCTTTGGGCCGAAATGCGAGTATGTTGAGTGGAAAAAGGGAGGTGAGTTGATTCGTGTCATGGAAGGAGATAAGGATGTAGTGAACTGTATCAAGTCTCATCCTCACACCATGGTACTTGCAAGCAGTGGAATTGAAAATGATATTAAGATGTGGACTCCAAAGGCTCTAGAGAGAGCTACTCTGCCTCAGAACATTGAACAGCAGAAACCCAAGGCTAAGGGCTGGATGTACCGCTTCTCGCCTCAGGAATTGATGCTGCAACTATTTTCACTGCAACGGCGGAGGACAAGCCCAGAGCACAGTGGGGAAAACTCATCGGCAGATCTAGAGCTAATACTGACATTAGATGCCAACAATGATGATTCTTCAGGAGGAGAAGAAGACGATGACAACTCCAGCCAGGGAGATTTTGTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005829 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0080008 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

195

Amino Acids

21.76

Weight (kDa)

4.65

Isoelectric Point (pI)

60.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35140 AT4G35140 AT4G38480 AT4G38480
fragaria_vesca	FvH4_2g15750 FvH4_2g15750 FvH4_2g15750
malus_domestica	MD05G1126500.v1.1
prunus_persica	Prupe.8G169900_v2.0.a1 Prupe.8G169900_v2.0.a1 Prupe.8G169900_v2.0.a1
pyrus_communis	pycom05g12230
rosa_chinensis	RchiOBHm_Chr6g0279061 RchiOBHm_Chr6g0279071
rosa_laevigata	RLG00000013169
rosa_multiflora	Rmu_co8384295.1_g000001
rosa_roxburghii	Rroxscaffold_7G00189170
rosa_rugosa	Rorug06G0121800 Rorug06G0121900 Rorug06G0122000
rosa_samantha	Rh6AG230800 Rh6BG235600 Rh6CG237700 Rh6DG229300
rosa_wichuraiana	Rw0G017050 Rw0G021130 Rw6G020200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	400, 448
AcuI	CTGAAG	2 cut(s)	93, 519
AfaI	GTAC	2 cut(s)	282, 398
AgsI	TTSAA	3 cut(s)	139, 302, 365
AjnI	CCWGG	1 cut(s)	567
AluBI	AGCT	2 cut(s)	344, 499
AluI	AGCT	2 cut(s)	344, 499
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	2 cut(s)	140, 267
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	1 cut(s)	424
AspS9I	GGNCC	2 cut(s)	11, 173
AsuHPI	GGTGA	2 cut(s)	56, 221
AvaII	GGWCC	1 cut(s)	11
AxyI	CCTNAGG	1 cut(s)	411
BbsI	GAAGAC	1 cut(s)	555
Bbv12I	GWGCWC	1 cut(s)	468
BbvI	GCAGC	1 cut(s)	411
BccI	CCATC	1 cut(s)	91
BceAI	ACGGC	1 cut(s)	461
BciT130I	CCWGG	1 cut(s)	569
BciVI	GTATCC	1 cut(s)	88
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	2 cut(s)	140, 267
BfaI	CTAG	2 cut(s)	335, 494
BfuI	GTATCC	1 cut(s)	88
BglII	AGATCT	1 cut(s)	490
BisI	GCNGC	1 cut(s)	425
BlsI	GCNGC	1 cut(s)	426
Bme1390I	CCNGG	1 cut(s)	569
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	2 cut(s)	11, 173
BmrFI	CCNGG	1 cut(s)	569
BmsI	GCATC	2 cut(s)	411, 505
BpiI	GAAGAC	1 cut(s)	555
BplI	GAGNNNNNCTC	2 cut(s)	331, 363
BpmI	CTGGAG	1 cut(s)	547
Bpu10I	CCTNAGC	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	102
BsaJI	CCNNGG	4 cut(s)	90, 276, 378, 568
BsaXI	ACNNNNNCTCC	1 cut(s)	564
Bse1I	ACTGG	1 cut(s)	67
Bse21I	CCTNAGG	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	569
BseDI	CCNNGG	4 cut(s)	90, 276, 378, 568
BseGI	GGATG	4 cut(s)	86, 247, 265, 399
BseMII	CTCAG	3 cut(s)	135, 368, 425
BseNI	ACTGG	1 cut(s)	67
BseRI	GAGGAG	1 cut(s)	555
BseXI	GCAGC	1 cut(s)	411
BshFI	GGCC	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	468
BsmAI	GTCTC	2 cut(s)	140, 267
BsnI	GGCC	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	2 cut(s)	61, 490
Bsp19I	CCATGG	2 cut(s)	90, 276
BspACI	CCGC	2 cut(s)	400, 448
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	3 cut(s)	136, 367, 424
BsrI	ACTGG	1 cut(s)	67
BssECI	CCNNGG	4 cut(s)	90, 276, 378, 568
BssMI	GATC	2 cut(s)	61, 490
BssT1I	CCWWGG	3 cut(s)	90, 276, 378
Bst2UI	CCWGG	1 cut(s)	569
Bst4CI	ACNGT	4 cut(s)	112, 151, 254, 470
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	4 cut(s)	144, 354, 384, 411
BstDSI	CCRYGG	2 cut(s)	90, 276
BstF5I	GGATG	4 cut(s)	86, 247, 265, 399
BstKTI	GATC	2 cut(s)	64, 493
BstMAI	GTCTC	2 cut(s)	140, 267
BstMBI	GATC	2 cut(s)	61, 490
BstNI	CCWGG	1 cut(s)	569
BstSCI	CCNGG	1 cut(s)	567
BstV1I	GCAGC	1 cut(s)	411
BstV2I	GAAGAC	1 cut(s)	555
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
Bsu36I	CCTNAGG	1 cut(s)	411
BsuI	GTATCC	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	175
BtgI	CCRYGG	2 cut(s)	90, 276
BtsCI	GGATG	4 cut(s)	86, 247, 265, 399
BtsI	GCAGTG	2 cut(s)	298, 437
BtsIMutI	CAGTG	4 cut(s)	156, 298, 437, 475
Cac8I	GCNNGC	1 cut(s)	289
Cfr13I	GGNCC	2 cut(s)	11, 173
Csp6I	GTAC	2 cut(s)	281, 397
CviAII	CATG	4 cut(s)	31, 91, 226, 277
CviJI	RGCY	8 cut(s)	175, 332, 344, 383, 390, 459, 499, 567
CviKI_1	RGCY	8 cut(s)	175, 332, 344, 383, 390, 459, 499, 567
CviQI	GTAC	2 cut(s)	281, 397
DdeI	CTNAG	4 cut(s)	144, 354, 384, 411
DpnI	GATC	2 cut(s)	63, 492
DpnII	GATC	2 cut(s)	61, 490
EciI	GGCGGA	1 cut(s)	463
Eco130I	CCWWGG	3 cut(s)	90, 276, 378
Eco47I	GGWCC	1 cut(s)	11
Eco57I	CTGAAG	2 cut(s)	93, 519
Eco81I	CCTNAGG	1 cut(s)	411
EcoO109I	RGGNCCY	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	567
EcoT14I	CCWWGG	3 cut(s)	90, 276, 378
ErhI	CCWWGG	3 cut(s)	90, 276, 378
FaeI	CATG	4 cut(s)	34, 94, 229, 280
FaiI	YATR	5 cut(s)	32, 92, 189, 227, 278
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FatI	CATG	4 cut(s)	30, 90, 225, 276
FbaI	TGATCA	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	425
FokI	GGATG	4 cut(s)	73, 252, 254, 406
Fsp4HI	GCNGC	1 cut(s)	425
FspBI	CTAG	2 cut(s)	335, 494
GluI	GCNGC	1 cut(s)	425
GsuI	CTGGAG	1 cut(s)	547
HaeIII	GGCC	1 cut(s)	175
Hin1II	CATG	4 cut(s)	34, 94, 229, 280
HinfI	GANTC	4 cut(s)	77, 217, 322, 530
HphI	GGTGA	2 cut(s)	56, 221
Hpy166II	GTNNAC	4 cut(s)	124, 163, 250, 321
Hpy188I	TCNGA	3 cut(s)	73, 145, 357
Hpy188III	TCNNGA	4 cut(s)	335, 413, 494, 537
Hpy8I	GTNNAC	4 cut(s)	124, 163, 250, 321
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	4 cut(s)	112, 151, 254, 470
HpyCH4V	TGCA	3 cut(s)	287, 427, 442
HpyF3I	CTNAG	4 cut(s)	144, 354, 384, 411
Hsp92II	CATG	4 cut(s)	34, 94, 229, 280
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	61, 490
LpnPI	CCDG	8 cut(s)	80, 376, 398, 474, 522, 554, 577, 581
Lsp1109I	GCAGC	1 cut(s)	411
LweI	GCATC	2 cut(s)	411, 505
MaeI	CTAG	2 cut(s)	335, 494
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	2 cut(s)	63, 492
MboI	GATC	2 cut(s)	61, 490
MboII	GAAGA	4 cut(s)	86, 525, 557, 560
MflI	RGATCY	1 cut(s)	490
MhlI	GDGCHC	1 cut(s)	468
MluCI	AATT	2 cut(s)	297, 416
MlyI	GAGTC	1 cut(s)	316
MnlI	CCTC	8 cut(s)	30, 126, 200, 279, 363, 420, 444, 533
MseI	TTAA	1 cut(s)	312
MslI	CAYNNNNRTG	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	569
MvaI	CCWGG	1 cut(s)	569
NcoI	CCATGG	2 cut(s)	90, 276
NdeII	GATC	2 cut(s)	61, 490
NlaIII	CATG	4 cut(s)	34, 94, 229, 280
NmuCI	GTSAC	1 cut(s)	131
PfeI	GAWTC	3 cut(s)	77, 217, 530
PkrI	GCNGC	1 cut(s)	426
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PpuMI	RGGWCCY	1 cut(s)	11
Psp5II	RGGWCCY	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	567
PspGI	CCWGG	1 cut(s)	567
PspPI	GGNCC	2 cut(s)	11, 173
PspPPI	RGGWCCY	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	490
RsaI	GTAC	2 cut(s)	282, 398
RsaNI	GTAC	2 cut(s)	281, 397
RseI	CAYNNNNRTG	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	1 cut(s)	425
Sau3AI	GATC	2 cut(s)	61, 490
Sau96I	GGNCC	2 cut(s)	11, 173
SchI	GAGTC	1 cut(s)	316
ScrFI	CCNGG	1 cut(s)	569
SduI	GDGCHC	1 cut(s)	468
SetI	ASST	5 cut(s)	16, 160, 211, 346, 501
SfaNI	GCATC	2 cut(s)	411, 505
SinI	GGWCC	1 cut(s)	11
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	117
SmoI	CTYRAG	1 cut(s)	117
Sse9I	AATT	2 cut(s)	297, 416
SsiI	CCGC	2 cut(s)	400, 448
SspMI	CTAG	2 cut(s)	335, 494
StyD4I	CCNGG	1 cut(s)	567
StyI	CCWWGG	3 cut(s)	90, 276, 378
TaaI	ACNGT	4 cut(s)	112, 151, 254, 470
TasI	AATT	2 cut(s)	297, 416
TfiI	GAWTC	3 cut(s)	77, 217, 530
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	4 cut(s)	156, 298, 444, 475
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	1 cut(s)	424
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	1 cut(s)	117
TspRI	CASTG	4 cut(s)	156, 298, 444, 475
VpaK11BI	GGWCC	1 cut(s)	11
XbaI	TCTAGA	2 cut(s)	334, 493
XspI	CTAG	2 cut(s)	335, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.