Rh6CG237700

DDB1- and CUL4-associated factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
40316739 .. 40320846
4108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG237700.1

Sequence Viewer

Length: 1332 bp
ATGTTTATGCAGAGGTTTAGTAAGATTTGTTCGTCCTCTTTTATTGTGAATCAGGATCTCGTGCTTCGACTTGATGTCCACAGGAAGCTGGACAAGCATAGAGGATGTGTGAACACCGTAAGCTTCAATGCAGATGGTGATATTTTGCTTTCGGGTTCTGATGACAGGCGGGTCATACTATGGAACTGGGAAACGGGGAAAGTTAAGTTGTCATTCCATTCCGGTCATAATAGCAATGTTTTCCAAGCAAAGTTCATGCCTTATAGTGATGATCGAAGCATTGTCACTTGTGCTGCTGATGGGCAGGTGAGACATACTCAGATTTTAGAACGAGGACAAGTGGAATGTTCAATGTTGGCCAGACACCGTGGACGCGCTCATAAGTTAGCTATTGAGCCTGGGAGCCCTCATATTTTCTATACCTGTGGTGAAGATGGACTGGTGCAACATTTTGATCTCAGAACTGGGGCTCCCACAAAACTTTTGACATGCCAAACACTTGATGGTAGAAGGAGTTACTTGCCAGTTATCAGTCTAAATGCAATTGCAATTGACCCAAGAAATCCAAATCTCTTTGCAGTCGCAGGTTCTGATGAGTATACCCGGCTTTTTGATATCCGCAAGTATAAATGGGATGGATCATCTGATTTTGGTCAACCCACGAACTACTTCTGCCCACCACATTTGATTGGTAATGACCATGTTGGAATTACAGGCTTGGCCTTTTCAGAACAAAGTGAGCTTCTTGTATCATACAATGACGAGTTCATCTATCTTTTTACACGAGAAATGGGATTAGGACCTAATCCTCCCATTTCCATGAGTAGTGATGCAAGTGAAATGAGTGATGATCATGAGTCTGAAGAATCTCCATCATCCATGGATACTGATGAAAAAACTGTTCCTCAAGTTTACAAGGGTCACTTGAACTCTGAGACAGTGAAAGGTGTGAACTTCTTTGGGCCGAAATGCGAGTATGTTGTGAGTGGGTCTGACTGTGGGCGGATATTCATATGGAAGAAAAAGGGAGGTGAGTTGATTCGTGTCATGGAAGGAGATAAGGATGTAGTAAACTGTATCAAGTCTCATCCTCACACCATGGTACTTGCAAGCAGTGGAATTGAAAATGATATTAAGATGTGGACTCCAAAGGCTCTAGAGAGAGCTACTCTGCCTCAGAACATTGAACAGGTATGCTTTGTTACCCTGAGCTGTTTATTTATGTGTATAATCTCAGTAAGGTTTATAAATTTGCTCATCCAACTTTCCCATGGGGCTTATCTTGCACATCCTAGTTGTGAGCTTAGATGGTGTTGTGGCCCTGAAGATTAG

Protein Analysis

443

Amino Acids

49.72

Weight (kDa)

6.02

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_CAF1B_HIR1 PF24105 19 - 72 8.8e-06 CAF1B/HIR1 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 19 - 114 2.8e-07 TEP-1 second beta-propeller
Beta-prop_WDR5 PF25175 24 - 163 2.9e-16 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 27 - 151 2.4e-13 WDR3 first beta-propeller domain
WD40 PF00400 28 - 62 3.3e-07 WD domain, G-beta repeat
WDR55 PF24796 29 - 154 6.2e-08 WDR55
Beta-prop_WDR3_2nd PF25172 29 - 149 3.1e-06 WDR3 second beta-propeller domain
WD40_CDC20-Fz PF24807 31 - 206 1.3e-08 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 33 - 104 1.2e-10 THOC3 beta-propeller domain
WD40_Prp19 PF24814 37 - 210 8.9e-13 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 295 - 381 7.7e-14 WDR5 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1247
AarI CACCTGC 1 cut(s) 295
AasI GACNNNNNNGTC 1 cut(s) 170
Acc36I ACCTGC 2 cut(s) 295, 575
AccI GTMKAC 1 cut(s) 599
AccII CGCG 1 cut(s) 375
AciI CCGC 3 cut(s) 169, 619, 1003
AclWI GGATC 2 cut(s) 63, 646
AcoI YGGCCR 1 cut(s) 357
AcsI RAATTY 1 cut(s) 1249
AcuI CTGAAG 1 cut(s) 882
AfaI GTAC 1 cut(s) 1104
AgsI TTSAA 5 cut(s) 127, 351, 928, 1124, 1187
AhdI GACNNNNNGTC 1 cut(s) 74
AjnI CCWGG 1 cut(s) 397
AloI GAACNNNNNNTCC 2 cut(s) 454, 486
AluBI AGCT 7 cut(s) 88, 123, 389, 742, 1166, 1212, 1303
AluI AGCT 7 cut(s) 88, 123, 389, 742, 1166, 1212, 1303
Alw26I GTCTC 3 cut(s) 304, 929, 1089
AlwI GGATC 2 cut(s) 63, 646
AlwNI CAGNNNCTG 1 cut(s) 590
AoxI GGCC 4 cut(s) 357, 720, 962, 1318
ApeKI GCWGC 1 cut(s) 293
ApoI RAATTY 1 cut(s) 1249
Asp700I GAANNNNTTC 1 cut(s) 668
AspLEI GCGC 1 cut(s) 377
AspS9I GGNCC 3 cut(s) 800, 962, 1319
AsuC2I CCSGG 1 cut(s) 604
AsuHPI GGTGA 4 cut(s) 149, 319, 440, 1043
AvaII GGWCC 1 cut(s) 800
BalI TGGCCA 1 cut(s) 359
BanII GRGCYC 2 cut(s) 407, 472
BauI CACGAG 2 cut(s) 59, 783
BbvI GCAGC 1 cut(s) 280
BccI CCATC 7 cut(s) 128, 293, 428, 497, 629, 880, 1302
BciT130I CCWGG 1 cut(s) 399
BciVI GTATCC 1 cut(s) 877
BclI TGATCA 1 cut(s) 850
BcnI CCSGG 1 cut(s) 604
BcoDI GTCTC 3 cut(s) 304, 929, 1089
BfaI CTAG 2 cut(s) 1157, 1293
BfuAI ACCTGC 2 cut(s) 295, 575
BfuI GTATCC 1 cut(s) 877
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
Bme1390I CCNGG 2 cut(s) 399, 604
Bme18I GGWCC 1 cut(s) 800
BmeRI GACNNNNNGTC 1 cut(s) 74
BmgT120I GGNCC 3 cut(s) 800, 962, 1319
BmiI GGNNCC 2 cut(s) 404, 471
BmrFI CCNGG 2 cut(s) 399, 604
BmrI ACTGGG 2 cut(s) 196, 474
BmsI GCATC 1 cut(s) 820
BmuI ACTGGG 2 cut(s) 196, 474
BplI GAGNNNNNCTC 4 cut(s) 301, 333, 1153, 1185
Bpu10I CCTNAGC 1 cut(s) 1208
BpuEI CTTGAG 1 cut(s) 891
BpuMI CCSGG 1 cut(s) 604
BsaJI CCNNGG 5 cut(s) 367, 398, 879, 1098, 1270
BsaWI WCCGGW 1 cut(s) 221
BsaXI ACNNNNNCTCC 2 cut(s) 454, 484
Bse1I ACTGG 4 cut(s) 191, 444, 469, 524
Bse3DI GCAATG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 399
BseDI CCNNGG 5 cut(s) 367, 398, 879, 1098, 1270
BseGI GGATG 7 cut(s) 110, 640, 875, 1069, 1087, 1257, 1288
BseMI GCAATG 1 cut(s) 241
BseMII CTCAG 6 cut(s) 332, 472, 924, 1190, 1199, 1248
BseNI ACTGG 4 cut(s) 191, 444, 469, 524
BseXI GCAGC 1 cut(s) 280
Bsh1236I CGCG 1 cut(s) 375
BshFI GGCC 4 cut(s) 359, 722, 964, 1320
BsiSI CCGG 2 cut(s) 222, 604
BsmAI GTCTC 3 cut(s) 304, 929, 1089
BsnI GGCC 4 cut(s) 359, 722, 964, 1320
Bsp1286I GDGCHC 2 cut(s) 407, 472
Bsp143I GATC 5 cut(s) 55, 271, 454, 638, 850
Bsp19I CCATGG 3 cut(s) 879, 1098, 1270
BspACI CCGC 3 cut(s) 169, 619, 1003
BspANI GGCC 4 cut(s) 359, 722, 964, 1320
BspCNI CTCAG 6 cut(s) 331, 471, 925, 1189, 1200, 1247
BspFNI CGCG 1 cut(s) 375
BspHI TCATGA 1 cut(s) 853
BspLI GGNNCC 2 cut(s) 404, 471
BspMI ACCTGC 2 cut(s) 295, 575
BspPI GGATC 2 cut(s) 63, 646
BsrDI GCAATG 1 cut(s) 241
BsrI ACTGG 4 cut(s) 191, 444, 469, 524
BssECI CCNNGG 5 cut(s) 367, 398, 879, 1098, 1270
BssMI GATC 5 cut(s) 55, 271, 454, 638, 850
BssNAI GTATAC 1 cut(s) 600
BssSI CACGAG 2 cut(s) 59, 783
BssT1I CCWWGG 3 cut(s) 879, 1098, 1270
Bst1107I GTATAC 1 cut(s) 600
Bst2BI CACGAG 2 cut(s) 59, 783
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 6 cut(s) 118, 368, 901, 940, 998, 1076
BstC8I GCNNGC 1 cut(s) 1111
BstDEI CTNAG 7 cut(s) 318, 458, 933, 1176, 1208, 1234, 1304
BstDSI CCRYGG 4 cut(s) 367, 879, 1098, 1270
BstF5I GGATG 7 cut(s) 110, 640, 875, 1069, 1087, 1257, 1288
BstFNI CGCG 1 cut(s) 375
BstHHI GCGC 1 cut(s) 377
BstKTI GATC 5 cut(s) 58, 274, 457, 641, 853
BstMAI GTCTC 3 cut(s) 304, 929, 1089
BstMBI GATC 5 cut(s) 55, 271, 454, 638, 850
BstMWI GCNNNNNNNGC 2 cut(s) 94, 1283
BstNI CCWGG 1 cut(s) 399
BstNSI RCATGY 1 cut(s) 492
BstSCI CCNGG 2 cut(s) 397, 602
BstUI CGCG 1 cut(s) 375
BstV1I GCAGC 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BstZ17I GTATAC 1 cut(s) 600
BsuI GTATCC 1 cut(s) 877
BsuRI GGCC 4 cut(s) 359, 722, 964, 1320
BtgI CCRYGG 4 cut(s) 367, 879, 1098, 1270
BtsCI GGATG 7 cut(s) 110, 640, 875, 1069, 1087, 1257, 1288
BtsI GCAGTG 1 cut(s) 1120
BtsIMutI CAGTG 2 cut(s) 945, 1120
BveI ACCTGC 2 cut(s) 295, 575
Cac8I GCNNGC 1 cut(s) 1111
CaiI CAGNNNCTG 1 cut(s) 590
CciI TCATGA 1 cut(s) 853
CfoI GCGC 1 cut(s) 377
Cfr13I GGNCC 3 cut(s) 800, 962, 1319
CseI GACGC 1 cut(s) 381
Csp6I GTAC 1 cut(s) 1103
CspCI CAANNNNNGTGG 2 cut(s) 666, 701
CviAII CATG 9 cut(s) 256, 489, 701, 820, 854, 880, 1048, 1099, 1271
CviQI GTAC 1 cut(s) 1103
DdeI CTNAG 7 cut(s) 318, 458, 933, 1176, 1208, 1234, 1304
DpnI GATC 5 cut(s) 57, 273, 456, 640, 852
DpnII GATC 5 cut(s) 55, 271, 454, 638, 850
DrdI GACNNNNNNGTC 1 cut(s) 170
DriI GACNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 170
EaeI YGGCCR 1 cut(s) 357
Eam1105I GACNNNNNGTC 1 cut(s) 74
EciI GGCGGA 1 cut(s) 1018
Eco130I CCWWGG 3 cut(s) 879, 1098, 1270
Eco24I GRGCYC 2 cut(s) 407, 472
Eco32I GATATC 1 cut(s) 616
Eco47I GGWCC 1 cut(s) 800
Eco57I CTGAAG 1 cut(s) 882
EcoO109I RGGNCCY 1 cut(s) 800
EcoRII CCWGG 1 cut(s) 397
EcoRV GATATC 1 cut(s) 616
EcoT14I CCWWGG 3 cut(s) 879, 1098, 1270
EcoT38I GRGCYC 2 cut(s) 407, 472
ErhI CCWWGG 3 cut(s) 879, 1098, 1270
FaeI CATG 9 cut(s) 259, 492, 704, 823, 857, 883, 1051, 1102, 1274
FalI AAGNNNNNCTT 2 cut(s) 908, 940
FatI CATG 9 cut(s) 255, 488, 700, 819, 853, 879, 1047, 1098, 1270
FauI CCCGC 1 cut(s) 162
FauNDI CATATG 1 cut(s) 1013
FbaI TGATCA 1 cut(s) 850
FblI GTMKAC 1 cut(s) 599
Fnu4HI GCNGC 1 cut(s) 294
FokI GGATG 7 cut(s) 117, 647, 862, 1074, 1076, 1244, 1275
FriOI GRGCYC 2 cut(s) 407, 472
Fsp4HI GCNGC 1 cut(s) 294
FspBI CTAG 2 cut(s) 1157, 1293
GlaI GCGC 1 cut(s) 376
GluI GCNGC 1 cut(s) 294
HaeIII GGCC 4 cut(s) 359, 722, 964, 1320
HapII CCGG 2 cut(s) 222, 604
HgaI GACGC 1 cut(s) 381
HhaI GCGC 1 cut(s) 377
Hin1II CATG 9 cut(s) 259, 492, 704, 823, 857, 883, 1051, 1102, 1274
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HincII GTYRAC 1 cut(s) 656
HindII GTYRAC 1 cut(s) 656
HindIII AAGCTT 1 cut(s) 121
HinfI GANTC 5 cut(s) 49, 857, 866, 1039, 1144
HpaII CCGG 2 cut(s) 222, 604
HphI GGTGA 4 cut(s) 149, 319, 440, 1043
Hpy166II GTNNAC 9 cut(s) 79, 112, 371, 600, 656, 913, 952, 1072, 1143
Hpy188III TCNNGA 3 cut(s) 53, 854, 1157
Hpy8I GTNNAC 9 cut(s) 79, 112, 371, 600, 656, 913, 952, 1072, 1143
HpyAV CCTTC 2 cut(s) 504, 1046
HpyCH4III ACNGT 6 cut(s) 118, 368, 901, 940, 998, 1076
HpyCH4V TGCA 9 cut(s) 10, 131, 445, 542, 548, 578, 833, 1109, 1286
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 1283
HpyF3I CTNAG 7 cut(s) 318, 458, 933, 1176, 1208, 1234, 1304
Hsp92II CATG 9 cut(s) 259, 492, 704, 823, 857, 883, 1051, 1102, 1274
HspAI GCGC 1 cut(s) 375
Ksp22I TGATCA 1 cut(s) 850
Kzo9I GATC 5 cut(s) 55, 271, 454, 638, 850
LmnI GCTCC 2 cut(s) 402, 475
Lsp1109I GCAGC 1 cut(s) 280
LweI GCATC 1 cut(s) 820
MaeI CTAG 2 cut(s) 1157, 1293
MaeIII GTNAC 4 cut(s) 283, 515, 920, 1201
MalI GATC 5 cut(s) 57, 273, 456, 640, 852
MboI GATC 5 cut(s) 55, 271, 454, 638, 850
MboII GAAGA 3 cut(s) 443, 875, 1030
MfeI CAATTG 2 cut(s) 543, 549
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 2 cut(s) 407, 472
MlsI TGGCCA 1 cut(s) 359
MluCI AATT 5 cut(s) 543, 549, 708, 1119, 1249
MluNI TGGCCA 1 cut(s) 359
MlyI GAGTC 2 cut(s) 866, 1138
MmeI TCCRAC 2 cut(s) 685, 1285
Mox20I TGGCCA 1 cut(s) 359
MroXI GAANNNNTTC 1 cut(s) 668
MscI TGGCCA 1 cut(s) 359
MseI TTAA 2 cut(s) 204, 1134
MslI CAYNNNNRTG 1 cut(s) 818
Msp20I TGGCCA 1 cut(s) 359
MspI CCGG 2 cut(s) 222, 604
MspR9I CCNGG 2 cut(s) 399, 604
MunI CAATTG 2 cut(s) 543, 549
MvaI CCWGG 1 cut(s) 399
MvnI CGCG 1 cut(s) 375
MwoI GCNNNNNNNGC 2 cut(s) 94, 1283
NciI CCSGG 1 cut(s) 604
NcoI CCATGG 3 cut(s) 879, 1098, 1270
NdeI CATATG 1 cut(s) 1013
NdeII GATC 5 cut(s) 55, 271, 454, 638, 850
NlaIII CATG 9 cut(s) 259, 492, 704, 823, 857, 883, 1051, 1102, 1274
NlaIV GGNNCC 2 cut(s) 404, 471
NmuCI GTSAC 2 cut(s) 283, 920
NspI RCATGY 1 cut(s) 492
PagI TCATGA 1 cut(s) 853
PaqCI CACCTGC 1 cut(s) 295
PdmI GAANNNNTTC 1 cut(s) 668
PfeI GAWTC 3 cut(s) 49, 866, 1039
PkrI GCNGC 1 cut(s) 295
PleI GAGTC 2 cut(s) 865, 1138
PpsI GAGTC 2 cut(s) 865, 1138
PpuMI RGGWCCY 1 cut(s) 800
PsiI TTATAA 1 cut(s) 1247
Psp5II RGGWCCY 1 cut(s) 800
Psp6I CCWGG 1 cut(s) 397
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 2 cut(s) 404, 471
PspPI GGNCC 3 cut(s) 800, 962, 1319
PspPPI RGGWCCY 1 cut(s) 800
PsrI GAACNNNNNNTAC 2 cut(s) 13, 45
PstNI CAGNNNCTG 1 cut(s) 590
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 1 cut(s) 1104
RsaNI GTAC 1 cut(s) 1103
RseI CAYNNNNRTG 1 cut(s) 818
SaqAI TTAA 2 cut(s) 204, 1134
SatI GCNGC 1 cut(s) 294
Sau3AI GATC 5 cut(s) 55, 271, 454, 638, 850
Sau96I GGNCC 3 cut(s) 800, 962, 1319
SchI GAGTC 2 cut(s) 866, 1138
ScrFI CCNGG 2 cut(s) 399, 604
SduI GDGCHC 2 cut(s) 407, 472
SfaNI GCATC 1 cut(s) 820
SinI GGWCC 1 cut(s) 800
SmiMI CAYNNNNRTG 1 cut(s) 818
SmlI CTYRAG 1 cut(s) 906
SmoI CTYRAG 1 cut(s) 906
Sse9I AATT 5 cut(s) 543, 549, 708, 1119, 1249
SsiI CCGC 3 cut(s) 169, 619, 1003
SspMI CTAG 2 cut(s) 1157, 1293
StyD4I CCNGG 2 cut(s) 397, 602
StyI CCWWGG 3 cut(s) 879, 1098, 1270
TaaI ACNGT 6 cut(s) 118, 368, 901, 940, 998, 1076
TaqI TCGA 2 cut(s) 67, 274
TasI AATT 5 cut(s) 543, 549, 708, 1119, 1249
TfiI GAWTC 3 cut(s) 49, 866, 1039
Tru1I TTAA 2 cut(s) 204, 1134
Tru9I TTAA 2 cut(s) 204, 1134
TscAI CASTG 2 cut(s) 945, 1120
TseFI GTSAC 2 cut(s) 283, 920
TseI GCWGC 1 cut(s) 293
Tsp45I GTSAC 2 cut(s) 283, 920
TspDTI ATGAA 4 cut(s) 244, 757, 906, 1000
TspRI CASTG 2 cut(s) 945, 1120
VpaK11BI GGWCC 1 cut(s) 800
XapI RAATTY 1 cut(s) 1249
XbaI TCTAGA 1 cut(s) 1156
XceI RCATGY 1 cut(s) 492
XcmI CCANNNNNNNNNTGG 2 cut(s) 500, 1268
XmiI GTMKAC 1 cut(s) 599
XmnI GAANNNNTTC 1 cut(s) 668
XspI CTAG 2 cut(s) 1157, 1293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.