Prupe.8G234600_v2.0.a1

Transmembrane emp24 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0004390
Physical Location & Seq
Reverse (-)
20795590 .. 20797054
1465 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G234600.1

Sequence Viewer

Length: 657 bp
ATGGAGACAAGAAAGAGATTTTCGTATGGGAAGATTTACGTAGCATATGGTTTTCTTATGAGCCTCATTGGCAATGGGAATTTTGCTACTGCTCTTTCAATCACCGTGACAGACTTGGAATGTGTCTCGGAGCAAGTTTTGTATGAGGGAGATACCGTCTCCGGAAACTTTGTTGCTATCGACCATGACATCTTTTGGAGCTCCGATCATCCCGGTATCGATTTCACCGCGATGACTCCAAGAGGTATCATAGTGTTCTCTCTAAAAGGAACATCGGGGGATAAGTTTGAGTTCAAGGCGCCGCAGAGCGGAATCTACAAGTTCTGTTTTCGCAATCCGGTTTCAACTCCGGAGACTGTATCTTTCTACATTCATGTTGGGCACATCCCAAATGAACATGACTTGGCTAGAGACGAACATATGGACCCTCTTAATATTAAGATTGCTGAGCTGAGGGAGGCATTGGAGTCTATAACAACAGAGCAAAAGTACCTTAAAGCACGAGATGCCAGGCATCGATATACAAATGTTAGCACCAAAAAACGTGTGATCTACTTCACACTTGCAGAGTACATTGTGTTTGCTGCTGCAAGTGCTCTTCAAGTGGTGTACATCCGCAATCTGTTCAGCAAGACGGTTGGCTACAACAGAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EMP24_GP25L

Protein Analysis

219

Amino Acids

24.72

Weight (kDa)

7.06

Isoelectric Point (pI)

20.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 298
AccBSI CCGCTC 1 cut(s) 309
AccII CGCG 1 cut(s) 230
AccIII TCCGGA 2 cut(s) 161, 349
AciI CCGC 4 cut(s) 228, 302, 309, 616
AcsI RAATTY 1 cut(s) 79
AcyI GRCGYC 1 cut(s) 299
AfaI GTAC 3 cut(s) 491, 572, 611
AfiI CCNNNNNNNGG 1 cut(s) 308
AflIII ACRYGT 1 cut(s) 544
AgsI TTSAA 4 cut(s) 99, 295, 345, 602
AjnI CCWGG 1 cut(s) 509
AluBI AGCT 2 cut(s) 201, 451
AluI AGCT 2 cut(s) 201, 451
Alw21I GWGCWC 2 cut(s) 203, 598
Alw26I GTCTC 4 cut(s) 130, 163, 347, 405
Aor13HI TCCGGA 2 cut(s) 161, 349
ApeKI GCWGC 2 cut(s) 584, 587
ApoI RAATTY 1 cut(s) 79
AspLEI GCGC 1 cut(s) 301
AspS9I GGNCC 1 cut(s) 424
AsuC2I CCSGG 1 cut(s) 213
AsuHPI GGTGA 2 cut(s) 94, 217
AvaII GGWCC 1 cut(s) 424
BaeGI GKGCMC 1 cut(s) 384
BanI GGYRCC 1 cut(s) 298
BanII GRGCYC 1 cut(s) 203
BauI CACGAG 1 cut(s) 501
Bbv12I GWGCWC 2 cut(s) 203, 598
BbvCI CCTCAGC 1 cut(s) 452
BbvI GCAGC 2 cut(s) 571, 574
BciT130I CCWGG 1 cut(s) 511
BcnI CCSGG 1 cut(s) 213
BcoDI GTCTC 4 cut(s) 130, 163, 347, 405
BfaI CTAG 1 cut(s) 408
BfoI RGCGCY 1 cut(s) 302
BglI GCCNNNNNGGC 1 cut(s) 69
BisI GCNGC 3 cut(s) 302, 585, 588
BlpI GCTNAGC 1 cut(s) 447
BlsI GCNGC 3 cut(s) 303, 586, 589
Bme1390I CCNGG 2 cut(s) 213, 511
Bme18I GGWCC 1 cut(s) 424
BmgT120I GGNCC 1 cut(s) 424
BmiI GGNNCC 2 cut(s) 300, 426
BmrFI CCNGG 2 cut(s) 213, 511
BmsI GCATC 2 cut(s) 496, 523
Bpu10I CCTNAGC 1 cut(s) 452
Bpu1102I GCTNAGC 1 cut(s) 447
BpuMI CCSGG 1 cut(s) 213
Bsa29I ATCGAT 2 cut(s) 219, 517
BsaAI YACGTR 1 cut(s) 40
BsaHI GRCGYC 1 cut(s) 299
BsaWI WCCGGW 3 cut(s) 161, 337, 349
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bsc4I CCNNNNNNNGG 1 cut(s) 308
Bse3DI GCAATG 1 cut(s) 79
BseAI TCCGGA 2 cut(s) 161, 349
BseBI CCWGG 1 cut(s) 511
BseCI ATCGAT 2 cut(s) 219, 517
BseGI GGATG 3 cut(s) 208, 384, 612
BseLI CCNNNNNNNGG 1 cut(s) 308
BseMI GCAATG 1 cut(s) 79
BseMII CTCAG 2 cut(s) 438, 443
BseSI GKGCMC 1 cut(s) 384
BseXI GCAGC 2 cut(s) 571, 574
Bsh1236I CGCG 1 cut(s) 230
BshNI GGYRCC 1 cut(s) 298
BshVI ATCGAT 2 cut(s) 219, 517
BsiHKAI GWGCWC 2 cut(s) 203, 598
BsiSI CCGG 4 cut(s) 162, 213, 338, 350
BslI CCNNNNNNNGG 1 cut(s) 308
BsmAI GTCTC 4 cut(s) 130, 163, 347, 405
BsmBI CGTCTC 2 cut(s) 163, 405
Bsp1286I GDGCHC 3 cut(s) 203, 384, 598
Bsp13I TCCGGA 2 cut(s) 161, 349
Bsp1407I TGTACA 1 cut(s) 609
Bsp143I GATC 2 cut(s) 205, 549
Bsp1720I GCTNAGC 1 cut(s) 447
BspACI CCGC 4 cut(s) 228, 302, 309, 616
BspCNI CTCAG 2 cut(s) 439, 444
BspDI ATCGAT 2 cut(s) 219, 517
BspEI TCCGGA 2 cut(s) 161, 349
BspFNI CGCG 1 cut(s) 230
BspLI GGNNCC 2 cut(s) 300, 426
BspQI GCTCTTC 1 cut(s) 603
BspT107I GGYRCC 1 cut(s) 298
BsrBI CCGCTC 1 cut(s) 309
BsrDI GCAATG 1 cut(s) 79
BsrGI TGTACA 1 cut(s) 609
BssMI GATC 2 cut(s) 205, 549
BssNI GRCGYC 1 cut(s) 299
BssSI CACGAG 1 cut(s) 501
Bst2BI CACGAG 1 cut(s) 501
Bst2UI CCWGG 1 cut(s) 511
Bst4CI ACNGT 4 cut(s) 106, 157, 358, 637
Bst6I CTCTTC 1 cut(s) 603
BstACI GRCGYC 1 cut(s) 299
BstAPI GCANNNNNTGC 1 cut(s) 506
BstAUI TGTACA 1 cut(s) 609
BstBAI YACGTR 1 cut(s) 40
BstDEI CTNAG 2 cut(s) 447, 452
BstF5I GGATG 3 cut(s) 208, 384, 612
BstFNI CGCG 1 cut(s) 230
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 1 cut(s) 301
BstKTI GATC 2 cut(s) 208, 552
BstMAI GTCTC 4 cut(s) 130, 163, 347, 405
BstMBI GATC 2 cut(s) 205, 549
BstMWI GCNNNNNNNGC 3 cut(s) 69, 506, 593
BstNI CCWGG 1 cut(s) 511
BstSCI CCNGG 2 cut(s) 211, 509
BstSLI GKGCMC 1 cut(s) 384
BstSNI TACGTA 1 cut(s) 40
BstUI CGCG 1 cut(s) 230
BstV1I GCAGC 2 cut(s) 571, 574
Bsu15I ATCGAT 2 cut(s) 219, 517
BsuTUI ATCGAT 2 cut(s) 219, 517
BtgZI GCGATG 1 cut(s) 245
BtsCI GGATG 3 cut(s) 208, 384, 612
CfoI GCGC 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 424
ClaI ATCGAT 2 cut(s) 219, 517
Csp6I GTAC 3 cut(s) 490, 571, 610
CviAII CATG 3 cut(s) 185, 374, 398
CviJI RGCY 5 cut(s) 63, 201, 407, 451, 642
CviKI_1 RGCY 5 cut(s) 63, 201, 407, 451, 642
CviQI GTAC 3 cut(s) 490, 571, 610
DdeI CTNAG 2 cut(s) 447, 452
DinI GGCGCC 1 cut(s) 300
DpnI GATC 2 cut(s) 207, 551
DpnII GATC 2 cut(s) 205, 549
Eam1104I CTCTTC 1 cut(s) 603
EarI CTCTTC 1 cut(s) 603
Ecl136II GAGCTC 1 cut(s) 201
Eco105I TACGTA 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 424
Eco53kI GAGCTC 1 cut(s) 201
EcoICRI GAGCTC 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 509
EcoT38I GRGCYC 1 cut(s) 203
EgeI GGCGCC 1 cut(s) 300
EheI GGCGCC 1 cut(s) 300
Esp3I CGTCTC 2 cut(s) 163, 405
FaeI CATG 3 cut(s) 188, 377, 401
FatI CATG 3 cut(s) 184, 373, 397
FauNDI CATATG 2 cut(s) 46, 420
Fnu4HI GCNGC 3 cut(s) 302, 585, 588
FokI GGATG 3 cut(s) 195, 371, 599
FriOI GRGCYC 1 cut(s) 203
Fsp4HI GCNGC 3 cut(s) 302, 585, 588
FspBI CTAG 1 cut(s) 408
GlaI GCGC 1 cut(s) 300
GluI GCNGC 3 cut(s) 302, 585, 588
HaeII RGCGCY 1 cut(s) 302
HapII CCGG 4 cut(s) 162, 213, 338, 350
HhaI GCGC 1 cut(s) 301
Hin1I GRCGYC 1 cut(s) 299
Hin1II CATG 3 cut(s) 188, 377, 401
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HinfI GANTC 3 cut(s) 235, 312, 467
HpaII CCGG 4 cut(s) 162, 213, 338, 350
HphI GGTGA 2 cut(s) 94, 217
Hpy166II GTNNAC 1 cut(s) 610
Hpy188I TCNGA 2 cut(s) 130, 205
Hpy188III TCNNGA 2 cut(s) 162, 350
Hpy8I GTNNAC 1 cut(s) 610
HpyCH4III ACNGT 4 cut(s) 106, 157, 358, 637
HpyCH4IV ACGT 2 cut(s) 39, 544
HpyCH4V TGCA 2 cut(s) 566, 590
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 506, 593
HpyF3I CTNAG 2 cut(s) 447, 452
HpySE526I ACGT 2 cut(s) 39, 544
Hsp92I GRCGYC 1 cut(s) 299
Hsp92II CATG 3 cut(s) 188, 377, 401
HspAI GCGC 1 cut(s) 299
KasI GGCGCC 1 cut(s) 298
Kpn2I TCCGGA 2 cut(s) 161, 349
Kzo9I GATC 2 cut(s) 205, 549
LguI GCTCTTC 1 cut(s) 603
LmnI GCTCC 3 cut(s) 130, 198, 206
LpnPI CCDG 6 cut(s) 175, 226, 351, 363, 496, 523
Lsp1109I GCAGC 2 cut(s) 571, 574
LweI GCATC 2 cut(s) 496, 523
MaeI CTAG 1 cut(s) 408
MaeII ACGT 2 cut(s) 39, 544
MaeIII GTNAC 1 cut(s) 106
MalI GATC 2 cut(s) 207, 551
MbiI CCGCTC 1 cut(s) 309
MboI GATC 2 cut(s) 205, 549
MboII GAAGA 2 cut(s) 43, 590
MhlI GDGCHC 3 cut(s) 203, 384, 598
MluCI AATT 1 cut(s) 79
Mly113I GGCGCC 1 cut(s) 299
MlyI GAGTC 2 cut(s) 229, 476
MnlI CCTC 6 cut(s) 74, 139, 236, 438, 447, 451
MroI TCCGGA 2 cut(s) 161, 349
MseI TTAA 4 cut(s) 432, 438, 495, 655
MslI CAYNNNNRTG 1 cut(s) 230
MspI CCGG 4 cut(s) 162, 213, 338, 350
MspR9I CCNGG 2 cut(s) 213, 511
MvaI CCWGG 1 cut(s) 511
MvnI CGCG 1 cut(s) 230
MwoI GCNNNNNNNGC 3 cut(s) 69, 506, 593
NarI GGCGCC 1 cut(s) 299
NciI CCSGG 1 cut(s) 213
NdeI CATATG 2 cut(s) 46, 420
NdeII GATC 2 cut(s) 205, 549
NlaIII CATG 3 cut(s) 188, 377, 401
NlaIV GGNNCC 2 cut(s) 300, 426
NmuCI GTSAC 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 603
PfeI GAWTC 1 cut(s) 312
PkrI GCNGC 3 cut(s) 303, 586, 589
PleI GAGTC 2 cut(s) 229, 475
PluTI GGCGCC 1 cut(s) 302
PpsI GAGTC 2 cut(s) 229, 475
Ppu21I YACGTR 1 cut(s) 40
Psp124BI GAGCTC 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 509
PspGI CCWGG 1 cut(s) 509
PspN4I GGNNCC 2 cut(s) 300, 426
PspPI GGNCC 1 cut(s) 424
RsaI GTAC 3 cut(s) 491, 572, 611
RsaNI GTAC 3 cut(s) 490, 571, 610
RseI CAYNNNNRTG 1 cut(s) 230
SacI GAGCTC 1 cut(s) 203
SapI GCTCTTC 1 cut(s) 603
SaqAI TTAA 4 cut(s) 432, 438, 495, 655
SatI GCNGC 3 cut(s) 302, 585, 588
Sau3AI GATC 2 cut(s) 205, 549
Sau96I GGNCC 1 cut(s) 424
SchI GAGTC 2 cut(s) 229, 476
ScrFI CCNGG 2 cut(s) 213, 511
SduI GDGCHC 3 cut(s) 203, 384, 598
SetI ASST 6 cut(s) 42, 203, 247, 453, 495, 547
SfaNI GCATC 2 cut(s) 496, 523
SfoI GGCGCC 1 cut(s) 300
SinI GGWCC 1 cut(s) 424
SmiMI CAYNNNNRTG 1 cut(s) 230
SnaBI TACGTA 1 cut(s) 40
Sse9I AATT 1 cut(s) 79
SsiI CCGC 4 cut(s) 228, 302, 309, 616
SspDI GGCGCC 1 cut(s) 298
SspI AATATT 1 cut(s) 436
SspMI CTAG 1 cut(s) 408
SstI GAGCTC 1 cut(s) 203
StyD4I CCNGG 2 cut(s) 211, 509
TaaI ACNGT 4 cut(s) 106, 157, 358, 637
TaiI ACGT 2 cut(s) 42, 547
TaqI TCGA 3 cut(s) 180, 219, 517
TasI AATT 1 cut(s) 79
TatI WGTACW 2 cut(s) 570, 609
TauI GCSGC 1 cut(s) 304
TfiI GAWTC 1 cut(s) 312
Tru1I TTAA 4 cut(s) 432, 438, 495, 655
Tru9I TTAA 4 cut(s) 432, 438, 495, 655
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 2 cut(s) 584, 587
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 2 cut(s) 362, 408
VpaK11BI GGWCC 1 cut(s) 424
XapI RAATTY 1 cut(s) 79
XspI CTAG 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.