Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002180.1

Orthogroup ID

OG0004390

Physical Location & Seq

Genomic Coordinates Reverse (-)

101404 .. 105236

Gene Structure 3833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002180.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

atggagtcttggcagagcagaaaaggcgtgatcttgatggggattctattggtgagctttgtggggcgaatcgcgtcgctatcggtgacggtgaacgacatggaatgcgtgtacgagtatgtgctctacgaagacgacgtcgtttcggggaacttcgtggtggtcgaccatgatatcttctgggccagcgatcatccgggtctcgatttaattgtgacatctcctgggggtaatacagtgcacacttcaaagggaacatctggagataagtttgagtttaaggccccaaggagtggaatgtacaagttctgttttcacaatccctactcaactccagaaacggtttcattcaatatacatgtcggccatattcctactgagcacaacattgccaaggatgaacatctagaccctattaatgtgaagatagctgagcttagagaggcattggagtcagttacattggaacaaaagtacttgaaagcacgtgatgctcgccatcgtcatacaaatgagagcacaagaaagcgtgttgtgctctacacagtgggagagtacatcatgctagttgctgcaagtgctttacaagttgtatacatccgccgcctctttagcaaatcaattggatataatcggaggcttgttggtgaatctcagtgttgtgcagttatacctgaccccggtagtgcagtgctcatatcggatcccaagaaaccagccagaggacatgagctttcccacgcagcaacaaaaaggttcatgttcaggaaaggccaaggcaaacagcatgtctgtaaggtgttcgaactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

270

Amino Acids

30.34

Weight (kDa)

8.51

Isoelectric Point (pI)

30.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22845
fragaria_vesca	FvH4_2g22930 FvH4_4g01530
malus_domestica	MD03G1257900.v1.1 MD11G1278600.v1.1 MD13G1200800.v1.1 MD16G1200100.v1.1
prunus_persica	Prupe.1G022300_v2.0.a1 Prupe.8G234600_v2.0.a1
pyrus_communis	pycom03g20430 pycom13g17430 pycom16g16930
rosa_chinensis	RchiOBHm_Chr4g0388091 RchiOBHm_Chr6g0289891
rosa_laevigata	RLG00000010081 RLG00000012258
rosa_multiflora	Rmu_sc0001312.1_g000001 Rmu_sc0002180.1_g000029
rosa_roxburghii	Rroxscaffold_5G00334640 Rroxscaffold_7G00177490
rosa_rugosa	Rorug03G0314700 Rorug06G0208000
rosa_samantha	Rh4AG020500 Rh4BG014800 Rh4CG021100 Rh4DG015500 Rh6AG319200 Rh6CG332200 Rh6DG317900
rosa_wichuraiana	Rw0G009810 Rw4G001360 Rw6G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
AccB7I	CCANNNNNTGG	1 cut(s)	293
AccI	GTMKAC	2 cut(s)	165, 594
AccII	CGCG	1 cut(s)	74
AciI	CCGC	2 cut(s)	601, 604
AclWI	GGATC	2 cut(s)	698, 711
AcoI	YGGCCR	1 cut(s)	364
AcvI	CACGTG	1 cut(s)	488
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	4 cut(s)	113, 302, 476, 557
AfiI	CCNNNNNNNGG	3 cut(s)	293, 680, 722
AflIII	ACRYGT	1 cut(s)	358
AgsI	TTSAA	3 cut(s)	249, 352, 481
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	4 cut(s)	57, 431, 436, 733
AluI	AGCT	4 cut(s)	57, 431, 436, 733
Alw21I	GWGCWC	6 cut(s)	126, 243, 384, 521, 540, 696
Alw26I	GTCTC	1 cut(s)	206
Alw44I	GTGCAC	1 cut(s)	239
AlwI	GGATC	2 cut(s)	698, 711
AoxI	GGCC	4 cut(s)	183, 282, 364, 772
ApaLI	GTGCAC	1 cut(s)	239
ApeKI	GCWGC	2 cut(s)	572, 743
ArsI	GACNNNNNNTTYG	4 cut(s)	123, 155, 774, 806
AseI	ATTAAT	1 cut(s)	417
AspS9I	GGNCC	2 cut(s)	183, 283
AsuC2I	CCSGG	2 cut(s)	198, 681
AsuHPI	GGTGA	4 cut(s)	64, 97, 103, 659
AsuII	TTCGAA	1 cut(s)	804
BaeGI	GKGCMC	1 cut(s)	243
BamHI	GGATCC	1 cut(s)	703
BbrPI	CACGTG	1 cut(s)	488
BbsI	GAAGAC	1 cut(s)	138
Bbv12I	GWGCWC	6 cut(s)	126, 243, 384, 521, 540, 696
BbvI	GCAGC	2 cut(s)	559, 755
BccI	CCATC	2 cut(s)	31, 507
BciT130I	CCWGG	1 cut(s)	225
BcnI	CCSGG	2 cut(s)	198, 681
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	2 cut(s)	407, 566
BisI	GCNGC	3 cut(s)	573, 604, 744
BlpI	GCTNAGC	1 cut(s)	432
BlsI	GCNGC	3 cut(s)	574, 605, 745
BmcAI	AGTACT	1 cut(s)	476
Bme1390I	CCNGG	3 cut(s)	198, 225, 681
BmgT120I	GGNCC	2 cut(s)	183, 283
BmiI	GGNNCC	2 cut(s)	285, 705
BmrFI	CCNGG	3 cut(s)	198, 225, 681
BmsI	GCATC	1 cut(s)	481
BpiI	GAAGAC	1 cut(s)	138
BpmI	CTGGAG	2 cut(s)	282, 318
Bpu1102I	GCTNAGC	1 cut(s)	432
Bpu14I	TTCGAA	1 cut(s)	804
BpuMI	CCSGG	2 cut(s)	198, 681
BsaAI	YACGTR	1 cut(s)	488
BsaBI	GATNNNNATC	1 cut(s)	402
BsaHI	GRCGYC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	5 cut(s)	224, 287, 393, 679, 775
Bsc4I	CCNNNNNNNGG	3 cut(s)	293, 680, 722
Bse3DI	GCAATG	1 cut(s)	387
Bse8I	GATNNNNATC	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	5 cut(s)	224, 287, 393, 679, 775
BseGI	GGATG	3 cut(s)	193, 403, 597
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	3 cut(s)	293, 680, 722
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	3 cut(s)	369, 423, 668
BseSI	GKGCMC	1 cut(s)	243
BseXI	GCAGC	2 cut(s)	559, 755
BsgI	GTGCAG	2 cut(s)	684, 708
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	4 cut(s)	185, 284, 366, 774
BsiHKAI	GWGCWC	6 cut(s)	126, 243, 384, 521, 540, 696
BsiSI	CCGG	2 cut(s)	197, 681
BslI	CCNNNNNNNGG	3 cut(s)	293, 680, 722
BsmAI	GTCTC	1 cut(s)	206
BsmI	GAATGC	1 cut(s)	110
BsnI	GGCC	4 cut(s)	185, 284, 366, 774
Bso31I	GGTCTC	1 cut(s)	206
Bsp119I	TTCGAA	1 cut(s)	804
Bsp1286I	GDGCHC	6 cut(s)	126, 243, 384, 521, 540, 696
Bsp1407I	TGTACA	1 cut(s)	300
Bsp143I	GATC	3 cut(s)	30, 190, 703
Bsp1720I	GCTNAGC	1 cut(s)	432
BspACI	CCGC	2 cut(s)	601, 604
BspANI	GGCC	4 cut(s)	185, 284, 366, 774
BspCNI	CTCAG	3 cut(s)	370, 424, 667
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	2 cut(s)	285, 705
BspPI	GGATC	2 cut(s)	698, 711
BspT104I	TTCGAA	1 cut(s)	804
BspTNI	GGTCTC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	387
BsrGI	TGTACA	1 cut(s)	300
BssECI	CCNNGG	5 cut(s)	224, 287, 393, 679, 775
BssMI	GATC	3 cut(s)	30, 190, 703
BssNAI	GTATAC	1 cut(s)	595
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	3 cut(s)	287, 393, 775
Bst1107I	GTATAC	1 cut(s)	595
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	4 cut(s)	91, 238, 343, 547
BstACI	GRCGYC	1 cut(s)	138
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstAUI	TGTACA	1 cut(s)	300
BstBAI	YACGTR	1 cut(s)	488
BstBI	TTCGAA	1 cut(s)	804
BstC8I	GCNNGC	2 cut(s)	187, 496
BstDEI	CTNAG	4 cut(s)	378, 432, 437, 654
BstF5I	GGATG	3 cut(s)	193, 403, 597
BstFNI	CGCG	1 cut(s)	74
BstKTI	GATC	3 cut(s)	33, 193, 706
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	3 cut(s)	30, 190, 703
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 491, 535, 578, 612
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	2 cut(s)	362, 791
BstSCI	CCNGG	3 cut(s)	196, 223, 679
BstSLI	GKGCMC	1 cut(s)	243
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	2 cut(s)	559, 755
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	703
BstYI	RGATCY	1 cut(s)	703
BstZ17I	GTATAC	1 cut(s)	595
BsuRI	GGCC	4 cut(s)	185, 284, 366, 774
BtsCI	GGATG	3 cut(s)	193, 403, 597
BtsI	GCAGTG	1 cut(s)	696
BtsIMutI	CAGTG	4 cut(s)	243, 552, 662, 696
Cac8I	GCNNGC	2 cut(s)	187, 496
Cfr13I	GGNCC	2 cut(s)	183, 283
CseI	GACGC	1 cut(s)	63
Csp6I	GTAC	4 cut(s)	112, 301, 475, 556
CviAII	CATG	7 cut(s)	100, 170, 359, 562, 728, 760, 788
CviQI	GTAC	4 cut(s)	112, 301, 475, 556
DdeI	CTNAG	4 cut(s)	378, 432, 437, 654
DpnI	GATC	3 cut(s)	32, 192, 705
DpnII	GATC	3 cut(s)	30, 190, 703
EaeI	YGGCCR	1 cut(s)	364
EciI	GGCGGA	1 cut(s)	590
Eco130I	CCWWGG	3 cut(s)	287, 393, 775
Eco31I	GGTCTC	1 cut(s)	206
Eco32I	GATATC	1 cut(s)	175
Eco72I	CACGTG	1 cut(s)	488
EcoO109I	RGGNCCY	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	223
EcoRV	GATATC	1 cut(s)	175
EcoT14I	CCWWGG	3 cut(s)	287, 393, 775
ErhI	CCWWGG	3 cut(s)	287, 393, 775
FaeI	CATG	7 cut(s)	103, 173, 362, 565, 731, 763, 791
FatI	CATG	7 cut(s)	99, 169, 358, 561, 727, 759, 787
FblI	GTMKAC	2 cut(s)	165, 594
Fnu4HI	GCNGC	3 cut(s)	573, 604, 744
FokI	GGATG	3 cut(s)	180, 410, 584
Fsp4HI	GCNGC	3 cut(s)	573, 604, 744
FspBI	CTAG	2 cut(s)	407, 566
GluI	GCNGC	3 cut(s)	573, 604, 744
GsuI	CTGGAG	2 cut(s)	282, 318
HaeIII	GGCC	4 cut(s)	185, 284, 366, 774
HapII	CCGG	2 cut(s)	197, 681
HgaI	GACGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	7 cut(s)	103, 173, 362, 565, 731, 763, 791
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	5 cut(s)	5, 43, 69, 452, 650
HpaII	CCGG	2 cut(s)	197, 681
HphI	GGTGA	4 cut(s)	64, 97, 103, 659
Hpy166II	GTNNAC	5 cut(s)	94, 112, 166, 241, 595
Hpy188I	TCNGA	2 cut(s)	636, 703
Hpy188III	TCNNGA	6 cut(s)	34, 203, 261, 335, 407, 766
Hpy8I	GTNNAC	5 cut(s)	94, 112, 166, 241, 595
Hpy99I	CGWCG	3 cut(s)	79, 140, 143
HpyCH4III	ACNGT	4 cut(s)	91, 238, 343, 547
HpyCH4IV	ACGT	2 cut(s)	138, 487
HpyCH4V	TGCA	4 cut(s)	241, 575, 665, 689
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 491, 535, 578, 612
HpyF3I	CTNAG	4 cut(s)	378, 432, 437, 654
HpySE526I	ACGT	2 cut(s)	138, 487
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	7 cut(s)	103, 173, 362, 565, 731, 763, 791
Kzo9I	GATC	3 cut(s)	30, 190, 703
Lsp1109I	GCAGC	2 cut(s)	559, 755
LweI	GCATC	1 cut(s)	481
MaeI	CTAG	2 cut(s)	407, 566
MaeII	ACGT	2 cut(s)	138, 487
MaeIII	GTNAC	3 cut(s)	85, 214, 457
MalI	GATC	3 cut(s)	32, 192, 705
MboI	GATC	3 cut(s)	30, 190, 703
MboII	GAAGA	3 cut(s)	143, 169, 436
MfeI	CAATTG	1 cut(s)	621
MflI	RGATCY	1 cut(s)	703
MhlI	GDGCHC	6 cut(s)	126, 243, 384, 521, 540, 696
MluCI	AATT	2 cut(s)	210, 621
MlyI	GAGTC	2 cut(s)	14, 461
MnlI	CCTC	4 cut(s)	436, 617, 630, 716
MseI	TTAA	3 cut(s)	209, 279, 417
MslI	CAYNNNNRTG	1 cut(s)	510
MspI	CCGG	2 cut(s)	197, 681
MspR9I	CCNGG	3 cut(s)	198, 225, 681
MunI	CAATTG	1 cut(s)	621
Mva1269I	GAATGC	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	225
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	5 cut(s)	24, 491, 535, 578, 612
NciI	CCSGG	2 cut(s)	198, 681
NdeII	GATC	3 cut(s)	30, 190, 703
NlaIII	CATG	7 cut(s)	103, 173, 362, 565, 731, 763, 791
NlaIV	GGNNCC	2 cut(s)	285, 705
NmuCI	GTSAC	2 cut(s)	85, 214
NspI	RCATGY	2 cut(s)	362, 791
NspV	TTCGAA	1 cut(s)	804
PciI	ACATGT	1 cut(s)	358
PcsI	WCGNNNNNNNCGW	2 cut(s)	135, 162
PctI	GAATGC	1 cut(s)	110
PfeI	GAWTC	3 cut(s)	43, 69, 650
PflFI	GACNNNGTC	1 cut(s)	137
PflMI	CCANNNNNTGG	1 cut(s)	293
PkrI	GCNGC	3 cut(s)	574, 605, 745
PleI	GAGTC	2 cut(s)	13, 460
PmaCI	CACGTG	1 cut(s)	488
PmlI	CACGTG	1 cut(s)	488
PpsI	GAGTC	2 cut(s)	13, 460
Ppu21I	YACGTR	1 cut(s)	488
PscI	ACATGT	1 cut(s)	358
PshBI	ATTAAT	1 cut(s)	417
Psp6I	CCWGG	1 cut(s)	223
PspCI	CACGTG	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	2 cut(s)	285, 705
PspPI	GGNCC	2 cut(s)	183, 283
PsuI	RGATCY	1 cut(s)	703
PsyI	GACNNNGTC	1 cut(s)	137
RsaI	GTAC	4 cut(s)	113, 302, 476, 557
RsaNI	GTAC	4 cut(s)	112, 301, 475, 556
RseI	CAYNNNNRTG	1 cut(s)	510
SalI	GTCGAC	1 cut(s)	164
SaqAI	TTAA	3 cut(s)	209, 279, 417
SatI	GCNGC	3 cut(s)	573, 604, 744
Sau3AI	GATC	3 cut(s)	30, 190, 703
Sau96I	GGNCC	2 cut(s)	183, 283
ScaI	AGTACT	1 cut(s)	476
SchI	GAGTC	2 cut(s)	14, 461
ScrFI	CCNGG	3 cut(s)	198, 225, 681
SduI	GDGCHC	6 cut(s)	126, 243, 384, 521, 540, 696
SetI	ASST	9 cut(s)	59, 141, 433, 438, 490, 676, 735, 758, 801
SfaNI	GCATC	1 cut(s)	481
SfuI	TTCGAA	1 cut(s)	804
SmiMI	CAYNNNNRTG	1 cut(s)	510
Sse9I	AATT	2 cut(s)	210, 621
SsiI	CCGC	2 cut(s)	601, 604
SspMI	CTAG	2 cut(s)	407, 566
StyD4I	CCNGG	3 cut(s)	196, 223, 679
StyI	CCWWGG	3 cut(s)	287, 393, 775
TaaI	ACNGT	4 cut(s)	91, 238, 343, 547
TaiI	ACGT	2 cut(s)	141, 490
TaqI	TCGA	3 cut(s)	165, 204, 804
TasI	AATT	2 cut(s)	210, 621
TatI	WGTACW	3 cut(s)	300, 474, 555
TauI	GCSGC	1 cut(s)	606
TfiI	GAWTC	3 cut(s)	43, 69, 650
Tru1I	TTAA	3 cut(s)	209, 279, 417
Tru9I	TTAA	3 cut(s)	209, 279, 417
TscAI	CASTG	4 cut(s)	243, 552, 662, 696
TseFI	GTSAC	2 cut(s)	85, 214
TseI	GCWGC	2 cut(s)	572, 743
Tsp45I	GTSAC	2 cut(s)	85, 214
TspDTI	ATGAA	3 cut(s)	336, 414, 748
TspRI	CASTG	4 cut(s)	243, 552, 662, 696
Tth111I	GACNNNGTC	1 cut(s)	137
Van91I	CCANNNNNTGG	1 cut(s)	293
VneI	GTGCAC	1 cut(s)	239
VspI	ATTAAT	1 cut(s)	417
XbaI	TCTAGA	1 cut(s)	406
XceI	RCATGY	2 cut(s)	362, 791
XmiI	GTMKAC	2 cut(s)	165, 594
XspI	CTAG	2 cut(s)	407, 566
ZraI	GACGTC	1 cut(s)	139
ZrmI	AGTACT	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.