Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004390

Physical Location & Seq

Genomic Coordinates Reverse (-)

20934107 .. 20935312

Gene Structure 1206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g20430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGAGAAACGAAAGCGATTTGAGACCGCCAAGATTTGCGTGGCGTACAGTTTTCTTATGAGCTTCATCGGCAATGGCAATGTTGCTACTGCTCTTTCAATCACCGTGACGGAGTTGGAATGCGTCTCGGAGCAAGTTCTGTACGAGGGAGACACGGTCTCCGGAAACTTTGTTGCAATCGACCACGACATCTTCTGGAGCTCCGACCACCCTGGTATCGATTTCACTGCCACAGCTCCAGGAGGCACTACTGTGTTTTCGCTGAAAGGAACGTCCGGGGATAAGTTCGCATTCAAGGCACCGAAAAGCGGATTGTACAAGTTTTGTTTTCGCAATCCTGTTTCGACTCCTGAGACTGTTTCGTTCTACATTCATGTTGGCCACATCCCAAATGAGCATGACTTAGCCAAAGACGAACATATGGACCCTTTGAATATTAAGATTGCTGAGCTGAGAGAAGCACTGGAAGCTGTCACAACAGAGCAAAAGTACCTTAAAGCACGAGATGCTAGGCATCGATATACAAATGTTAGCACCAATAAACGAGTGATCTACTTCACACTTGCAGAGTACCTTGTGTTTGCTGGTGCAAGTGCTCTTCAAGTGTTGTACATCCGCAACCTGTTTAGCAAGTCTGTTGCCTATAACAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

219

Amino Acids

24.4

Weight (kDa)

7.05

Isoelectric Point (pI)

24.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22845
fragaria_vesca	FvH4_2g22930 FvH4_4g01530
malus_domestica	MD03G1257900.v1.1 MD11G1278600.v1.1 MD13G1200800.v1.1 MD16G1200100.v1.1
prunus_persica	Prupe.1G022300_v2.0.a1 Prupe.8G234600_v2.0.a1
pyrus_communis	pycom03g20430 pycom13g17430 pycom16g16930
rosa_chinensis	RchiOBHm_Chr4g0388091 RchiOBHm_Chr6g0289891
rosa_laevigata	RLG00000010081 RLG00000012258
rosa_multiflora	Rmu_sc0001312.1_g000001 Rmu_sc0002180.1_g000029
rosa_roxburghii	Rroxscaffold_5G00334640 Rroxscaffold_7G00177490
rosa_rugosa	Rorug03G0314700 Rorug06G0208000
rosa_samantha	Rh4AG020500 Rh4BG014800 Rh4CG021100 Rh4DG015500 Rh6AG319200 Rh6CG332200 Rh6DG317900
rosa_wichuraiana	Rw0G009810 Rw4G001360 Rw6G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	298
AccIII	TCCGGA	1 cut(s)	161
AciI	CCGC	3 cut(s)	27, 309, 616
AcoI	YGGCCR	1 cut(s)	379
AfaI	GTAC	6 cut(s)	47, 143, 317, 491, 572, 611
AfiI	CCNNNNNNNGG	1 cut(s)	308
AgsI	TTSAA	4 cut(s)	99, 295, 433, 602
AjnI	CCWGG	2 cut(s)	211, 238
AleI	CACNNNNGTG	1 cut(s)	251
AluBI	AGCT	5 cut(s)	63, 201, 236, 451, 470
AluI	AGCT	5 cut(s)	63, 201, 236, 451, 470
Alw21I	GWGCWC	2 cut(s)	203, 598
Alw26I	GTCTC	5 cut(s)	17, 130, 144, 163, 347
Aor13HI	TCCGGA	1 cut(s)	161
AoxI	GGCC	1 cut(s)	379
AspS9I	GGNCC	1 cut(s)	424
AsuC2I	CCSGG	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	424
BaeI	ACNNNNGTAYC	2 cut(s)	199, 232
BalI	TGGCCA	1 cut(s)	381
BanI	GGYRCC	1 cut(s)	298
BanII	GRGCYC	1 cut(s)	203
BauI	CACGAG	1 cut(s)	501
Bbv12I	GWGCWC	2 cut(s)	203, 598
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BciT130I	CCWGG	2 cut(s)	213, 240
BcnI	CCSGG	1 cut(s)	277
BcoDI	GTCTC	5 cut(s)	17, 130, 144, 163, 347
BfaI	CTAG	1 cut(s)	510
BlpI	GCTNAGC	1 cut(s)	447
Bme1390I	CCNGG	3 cut(s)	213, 240, 277
Bme18I	GGWCC	1 cut(s)	424
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	2 cut(s)	300, 426
BmrFI	CCNGG	3 cut(s)	213, 240, 277
BmsI	GCATC	2 cut(s)	496, 523
BpmI	CTGGAG	2 cut(s)	217, 222
Bpu1102I	GCTNAGC	1 cut(s)	447
BpuMI	CCSGG	1 cut(s)	277
Bsa29I	ATCGAT	2 cut(s)	219, 517
BsaI	GGTCTC	2 cut(s)	17, 163
BsaJI	CCNNGG	2 cut(s)	211, 276
BsaWI	WCCGGW	1 cut(s)	161
BsaXI	ACNNNNNCTCC	4 cut(s)	141, 143, 171, 173
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	468
Bse3DI	GCAATG	2 cut(s)	79, 85
BseAI	TCCGGA	1 cut(s)	161
BseBI	CCWGG	2 cut(s)	213, 240
BseCI	ATCGAT	2 cut(s)	219, 517
BseDI	CCNNGG	2 cut(s)	211, 276
BseGI	GGATG	2 cut(s)	384, 612
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMI	GCAATG	2 cut(s)	79, 85
BseMII	CTCAG	3 cut(s)	342, 438, 443
BseNI	ACTGG	1 cut(s)	468
BshFI	GGCC	1 cut(s)	381
BshNI	GGYRCC	1 cut(s)	298
BshVI	ATCGAT	2 cut(s)	219, 517
BsiHKAI	GWGCWC	2 cut(s)	203, 598
BsiSI	CCGG	2 cut(s)	162, 276
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	5 cut(s)	17, 130, 144, 163, 347
BsmBI	CGTCTC	1 cut(s)	130
BsmI	GAATGC	2 cut(s)	125, 290
BsnI	GGCC	1 cut(s)	381
Bso31I	GGTCTC	2 cut(s)	17, 163
Bsp1286I	GDGCHC	2 cut(s)	203, 598
Bsp13I	TCCGGA	1 cut(s)	161
Bsp1407I	TGTACA	2 cut(s)	315, 609
Bsp143I	GATC	1 cut(s)	549
Bsp1720I	GCTNAGC	1 cut(s)	447
BspACI	CCGC	3 cut(s)	27, 309, 616
BspANI	GGCC	1 cut(s)	381
BspCNI	CTCAG	3 cut(s)	343, 439, 444
BspDI	ATCGAT	2 cut(s)	219, 517
BspEI	TCCGGA	1 cut(s)	161
BspLI	GGNNCC	2 cut(s)	300, 426
BspQI	GCTCTTC	1 cut(s)	603
BspT107I	GGYRCC	1 cut(s)	298
BspTNI	GGTCTC	2 cut(s)	17, 163
BsrDI	GCAATG	2 cut(s)	79, 85
BsrGI	TGTACA	2 cut(s)	315, 609
BsrI	ACTGG	1 cut(s)	468
BssECI	CCNNGG	2 cut(s)	211, 276
BssMI	GATC	1 cut(s)	549
BssSI	CACGAG	1 cut(s)	501
Bst2BI	CACGAG	1 cut(s)	501
Bst2UI	CCWGG	2 cut(s)	213, 240
Bst4CI	ACNGT	5 cut(s)	50, 106, 157, 253, 358
Bst6I	CTCTTC	1 cut(s)	603
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstAUI	TGTACA	2 cut(s)	315, 609
BstDEI	CTNAG	4 cut(s)	351, 403, 447, 452
BstF5I	GGATG	2 cut(s)	384, 612
BstKTI	GATC	1 cut(s)	552
BstMAI	GTCTC	5 cut(s)	17, 130, 144, 163, 347
BstMBI	GATC	1 cut(s)	549
BstMWI	GCNNNNNNNGC	4 cut(s)	69, 296, 467, 506
BstNI	CCWGG	2 cut(s)	213, 240
BstSCI	CCNGG	3 cut(s)	211, 238, 275
Bsu15I	ATCGAT	2 cut(s)	219, 517
BsuRI	GGCC	1 cut(s)	381
BsuTUI	ATCGAT	2 cut(s)	219, 517
BtsCI	GGATG	2 cut(s)	384, 612
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	2 cut(s)	225, 461
Cfr13I	GGNCC	1 cut(s)	424
ClaI	ATCGAT	2 cut(s)	219, 517
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	6 cut(s)	46, 142, 316, 490, 571, 610
CviAII	CATG	2 cut(s)	374, 398
CviJI	RGCY	7 cut(s)	63, 201, 236, 381, 407, 451, 470
CviKI_1	RGCY	7 cut(s)	63, 201, 236, 381, 407, 451, 470
CviQI	GTAC	6 cut(s)	46, 142, 316, 490, 571, 610
DdeI	CTNAG	4 cut(s)	351, 403, 447, 452
DpnI	GATC	1 cut(s)	551
DpnII	GATC	1 cut(s)	549
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
Ecl136II	GAGCTC	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	203
Eco31I	GGTCTC	2 cut(s)	17, 163
Eco47I	GGWCC	1 cut(s)	424
Eco53kI	GAGCTC	1 cut(s)	201
EcoICRI	GAGCTC	1 cut(s)	201
EcoRII	CCWGG	2 cut(s)	211, 238
EcoT38I	GRGCYC	1 cut(s)	203
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	2 cut(s)	377, 401
FaiI	YATR	7 cut(s)	59, 375, 399, 420, 422, 522, 645
FatI	CATG	2 cut(s)	373, 397
FauNDI	CATATG	1 cut(s)	420
FokI	GGATG	2 cut(s)	371, 599
FriOI	GRGCYC	1 cut(s)	203
FspBI	CTAG	1 cut(s)	510
GsuI	CTGGAG	2 cut(s)	217, 222
HaeIII	GGCC	1 cut(s)	381
HapII	CCGG	2 cut(s)	162, 276
HgaI	GACGC	1 cut(s)	112
Hin1II	CATG	2 cut(s)	377, 401
HinfI	GANTC	1 cut(s)	346
HpaII	CCGG	2 cut(s)	162, 276
HphI	GGTGA	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	130, 205
Hpy188III	TCNNGA	3 cut(s)	162, 196, 350
HpyCH4III	ACNGT	5 cut(s)	50, 106, 157, 253, 358
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	3 cut(s)	176, 566, 590
HpyF10VI	GCNNNNNNNGC	4 cut(s)	69, 296, 467, 506
HpyF3I	CTNAG	4 cut(s)	351, 403, 447, 452
HpySE526I	ACGT	1 cut(s)	272
Hsp92II	CATG	2 cut(s)	377, 401
Kpn2I	TCCGGA	1 cut(s)	161
Kzo9I	GATC	1 cut(s)	549
LguI	GCTCTTC	1 cut(s)	603
LmnI	GCTCC	4 cut(s)	130, 198, 206, 241
LweI	GCATC	2 cut(s)	496, 523
MaeI	CTAG	1 cut(s)	510
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	2 cut(s)	106, 472
MalI	GATC	1 cut(s)	551
MboI	GATC	1 cut(s)	549
MboII	GAAGA	2 cut(s)	184, 590
MhlI	GDGCHC	2 cut(s)	203, 598
MlsI	TGGCCA	1 cut(s)	381
MluNI	TGGCCA	1 cut(s)	381
MlyI	GAGTC	1 cut(s)	340
MmeI	TCCRAC	2 cut(s)	96, 228
MnlI	CCTC	2 cut(s)	139, 236
Mox20I	TGGCCA	1 cut(s)	381
MroI	TCCGGA	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	2 cut(s)	438, 495
MslI	CAYNNNNRTG	1 cut(s)	251
Msp20I	TGGCCA	1 cut(s)	381
MspI	CCGG	2 cut(s)	162, 276
MspR9I	CCNGG	3 cut(s)	213, 240, 277
Mva1269I	GAATGC	2 cut(s)	125, 290
MvaI	CCWGG	2 cut(s)	213, 240
MwoI	GCNNNNNNNGC	4 cut(s)	69, 296, 467, 506
NciI	CCSGG	1 cut(s)	277
NdeI	CATATG	1 cut(s)	420
NdeII	GATC	1 cut(s)	549
NlaIII	CATG	2 cut(s)	377, 401
NlaIV	GGNNCC	2 cut(s)	300, 426
NmuCI	GTSAC	2 cut(s)	106, 472
OliI	CACNNNNGTG	1 cut(s)	251
PciSI	GCTCTTC	1 cut(s)	603
PctI	GAATGC	2 cut(s)	125, 290
PflFI	GACNNNGTC	1 cut(s)	155
PfoI	TCCNGGA	1 cut(s)	238
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
Psp124BI	GAGCTC	1 cut(s)	203
Psp6I	CCWGG	2 cut(s)	211, 238
PspGI	CCWGG	2 cut(s)	211, 238
PspN4I	GGNNCC	2 cut(s)	300, 426
PspPI	GGNCC	1 cut(s)	424
PsyI	GACNNNGTC	1 cut(s)	155
RsaI	GTAC	6 cut(s)	47, 143, 317, 491, 572, 611
RsaNI	GTAC	6 cut(s)	46, 142, 316, 490, 571, 610
RseI	CAYNNNNRTG	1 cut(s)	251
SacI	GAGCTC	1 cut(s)	203
SapI	GCTCTTC	1 cut(s)	603
SaqAI	TTAA	2 cut(s)	438, 495
Sau3AI	GATC	1 cut(s)	549
Sau96I	GGNCC	1 cut(s)	424
SchI	GAGTC	1 cut(s)	340
ScrFI	CCNGG	3 cut(s)	213, 240, 277
SduI	GDGCHC	2 cut(s)	203, 598
SetI	ASST	9 cut(s)	65, 203, 238, 275, 453, 472, 495, 576, 624
SfaNI	GCATC	2 cut(s)	496, 523
SinI	GGWCC	1 cut(s)	424
SmiMI	CAYNNNNRTG	1 cut(s)	251
SsiI	CCGC	3 cut(s)	27, 309, 616
SspI	AATATT	1 cut(s)	436
SspMI	CTAG	1 cut(s)	510
SstI	GAGCTC	1 cut(s)	203
StyD4I	CCNGG	3 cut(s)	211, 238, 275
TaaI	ACNGT	5 cut(s)	50, 106, 157, 253, 358
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	4 cut(s)	180, 219, 344, 517
TatI	WGTACW	2 cut(s)	315, 609
Tru1I	TTAA	2 cut(s)	438, 495
Tru9I	TTAA	2 cut(s)	438, 495
TscAI	CASTG	2 cut(s)	232, 468
TseFI	GTSAC	2 cut(s)	106, 472
Tsp45I	GTSAC	2 cut(s)	106, 472
TspDTI	ATGAA	2 cut(s)	55, 362
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	2 cut(s)	232, 468
Tth111I	GACNNNGTC	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	424
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
XspI	CTAG	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.