Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001312.1

Orthogroup ID

OG0004390

Physical Location & Seq

Genomic Coordinates Reverse (-)

1144 .. 2494

Gene Structure 1351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001312.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atggagacgaggaagagatttgagtgtgccaaattatacgtagcatgcggttttatgttgtgccttattggccataggaatgttgctgctctttcgatcactgtgactgatgtggaatgcgtttcggagctagttttgtacgagggagacaccatttctgggaattttgttgccattgatcatgatatcttctggagccatgatcatcccggtctcgaattcaccgtaacatctccgggaggcagtacagtattttctctcaaaggaacatcgggcgataagtttgaactcaaggcgccacaaggcggaatctacaagttctgtttccgcaatccggctcaaactccggagactgtgtctttctacatacatgttggtcacattccaactgagcatgacttggcccaagatgaacatatggaccctctaaatattaagattgccgagctgagggaggcattggagtctatcagagcggagcaaaagtaccttaaagcccgggatgcaaggcatcgatacacaaatcaaagcaccaaaaaacgtgttatctacttcacactagcagagtacattgtctttgccggtgcaagtgctcttcaagtggtgtacatccgcaatctgttcagcaagacggttggctacaacagagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

217

Amino Acids

24.49

Weight (kDa)

6.75

Isoelectric Point (pI)

31.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22845
fragaria_vesca	FvH4_2g22930 FvH4_4g01530
malus_domestica	MD03G1257900.v1.1 MD11G1278600.v1.1 MD13G1200800.v1.1 MD16G1200100.v1.1
prunus_persica	Prupe.1G022300_v2.0.a1 Prupe.8G234600_v2.0.a1
pyrus_communis	pycom03g20430 pycom13g17430 pycom16g16930
rosa_chinensis	RchiOBHm_Chr4g0388091 RchiOBHm_Chr6g0289891
rosa_laevigata	RLG00000010081 RLG00000012258
rosa_multiflora	Rmu_sc0001312.1_g000001 Rmu_sc0002180.1_g000029
rosa_roxburghii	Rroxscaffold_5G00334640 Rroxscaffold_7G00177490
rosa_rugosa	Rorug03G0314700 Rorug06G0208000
rosa_samantha	Rh4AG020500 Rh4BG014800 Rh4CG021100 Rh4DG015500 Rh6AG319200 Rh6CG332200 Rh6DG317900
rosa_wichuraiana	Rw0G009810 Rw4G001360 Rw6G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	295
AccBSI	CCGCTC	1 cut(s)	476
AccIII	TCCGGA	1 cut(s)	346
AciI	CCGC	5 cut(s)	48, 306, 328, 476, 613
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	2 cut(s)	163, 218
AcyI	GRCGYC	1 cut(s)	296
AfaI	GTAC	5 cut(s)	140, 247, 488, 569, 608
AfiI	CCNNNNNNNGG	4 cut(s)	159, 305, 334, 450
AflIII	ACRYGT	2 cut(s)	370, 541
AgsI	TTSAA	2 cut(s)	287, 599
AluBI	AGCT	2 cut(s)	130, 448
AluI	AGCT	2 cut(s)	130, 448
Alw21I	GWGCWC	1 cut(s)	595
Alw26I	GTCTC	3 cut(s)	141, 218, 344
Ama87I	CYCGRG	1 cut(s)	498
Aor13HI	TCCGGA	1 cut(s)	346
AoxI	GGCC	2 cut(s)	70, 402
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	2 cut(s)	163, 218
AspLEI	GCGC	1 cut(s)	298
AspS9I	GGNCC	2 cut(s)	403, 421
AsuC2I	CCSGG	4 cut(s)	210, 237, 499, 500
AsuHPI	GGTGA	1 cut(s)	214
AvaI	CYCGRG	1 cut(s)	498
AvaII	GGWCC	1 cut(s)	421
BalI	TGGCCA	1 cut(s)	72
BanI	GGYRCC	1 cut(s)	295
Bbv12I	GWGCWC	1 cut(s)	595
BbvCI	CCTCAGC	1 cut(s)	449
BbvI	GCAGC	1 cut(s)	73
BclI	TGATCA	2 cut(s)	178, 202
BcnI	CCSGG	4 cut(s)	210, 237, 499, 500
BcoDI	GTCTC	3 cut(s)	141, 218, 344
BfaI	CTAG	2 cut(s)	131, 560
BfoI	RGCGCY	1 cut(s)	299
BglI	GCCNNNNNGGC	1 cut(s)	69
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
Bme1390I	CCNGG	4 cut(s)	210, 237, 499, 500
Bme18I	GGWCC	1 cut(s)	421
BmeT110I	CYCGRG	1 cut(s)	498
BmgT120I	GGNCC	2 cut(s)	403, 421
BmiI	GGNNCC	3 cut(s)	197, 297, 423
BmrFI	CCNGG	4 cut(s)	210, 237, 499, 500
BmsI	GCATC	2 cut(s)	493, 520
BpmI	CTGGAG	1 cut(s)	214
Bpu10I	CCTNAGC	1 cut(s)	449
BpuEI	CTTGAG	1 cut(s)	275
BpuMI	CCSGG	4 cut(s)	210, 237, 499, 500
Bsa29I	ATCGAT	1 cut(s)	514
BsaAI	YACGTR	1 cut(s)	40
BsaHI	GRCGYC	1 cut(s)	296
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	498
BsaWI	WCCGGW	1 cut(s)	346
BsaXI	ACNNNNNCTCC	4 cut(s)	341, 371, 470, 500
Bsc4I	CCNNNNNNNGG	4 cut(s)	159, 305, 334, 450
Bse118I	RCCGGY	1 cut(s)	581
BseAI	TCCGGA	1 cut(s)	346
BseCI	ATCGAT	1 cut(s)	514
BseDI	CCNNGG	1 cut(s)	498
BseGI	GGATG	3 cut(s)	205, 508, 609
BseLI	CCNNNNNNNGG	4 cut(s)	159, 305, 334, 450
BseMII	CTCAG	2 cut(s)	381, 440
BseXI	GCAGC	1 cut(s)	73
BshFI	GGCC	2 cut(s)	72, 404
BshNI	GGYRCC	1 cut(s)	295
BshVI	ATCGAT	1 cut(s)	514
BsiHKAI	GWGCWC	1 cut(s)	595
BsiHKCI	CYCGRG	1 cut(s)	498
BsiSI	CCGG	6 cut(s)	210, 236, 335, 347, 499, 582
BslI	CCNNNNNNNGG	4 cut(s)	159, 305, 334, 450
BsmAI	GTCTC	3 cut(s)	141, 218, 344
BsmI	GAATGC	1 cut(s)	122
BsnI	GGCC	2 cut(s)	72, 404
Bso31I	GGTCTC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	498
Bsp1286I	GDGCHC	1 cut(s)	595
Bsp13I	TCCGGA	1 cut(s)	346
Bsp1407I	TGTACA	1 cut(s)	606
Bsp143I	GATC	3 cut(s)	96, 178, 202
BspACI	CCGC	5 cut(s)	48, 306, 328, 476, 613
BspANI	GGCC	2 cut(s)	72, 404
BspCNI	CTCAG	2 cut(s)	382, 441
BspDI	ATCGAT	1 cut(s)	514
BspEI	TCCGGA	1 cut(s)	346
BspHI	TCATGA	1 cut(s)	181
BspLI	GGNNCC	3 cut(s)	197, 297, 423
BspQI	GCTCTTC	1 cut(s)	600
BspT107I	GGYRCC	1 cut(s)	295
BspTNI	GGTCTC	1 cut(s)	218
BsrBI	CCGCTC	1 cut(s)	476
BsrFI	RCCGGY	1 cut(s)	581
BsrGI	TGTACA	1 cut(s)	606
BssAI	RCCGGY	1 cut(s)	581
BssECI	CCNNGG	1 cut(s)	498
BssMI	GATC	3 cut(s)	96, 178, 202
BssNI	GRCGYC	1 cut(s)	296
Bst4CI	ACNGT	5 cut(s)	103, 226, 250, 355, 634
Bst6I	CTCTTC	2 cut(s)	8, 600
BstACI	GRCGYC	1 cut(s)	296
BstAUI	TGTACA	1 cut(s)	606
BstBAI	YACGTR	1 cut(s)	40
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	2 cut(s)	390, 449
BstF5I	GGATG	3 cut(s)	205, 508, 609
BstH2I	RGCGCY	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	3 cut(s)	99, 181, 205
BstMAI	GTCTC	3 cut(s)	141, 218, 344
BstMBI	GATC	3 cut(s)	96, 178, 202
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 503
BstNSI	RCATGY	2 cut(s)	48, 374
BstSCI	CCNGG	4 cut(s)	208, 235, 497, 498
BstSNI	TACGTA	1 cut(s)	40
BstV1I	GCAGC	1 cut(s)	73
Bsu15I	ATCGAT	1 cut(s)	514
BsuRI	GGCC	2 cut(s)	72, 404
BsuTUI	ATCGAT	1 cut(s)	514
BtsCI	GGATG	3 cut(s)	205, 508, 609
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	46
CciI	TCATGA	1 cut(s)	181
CfoI	GCGC	1 cut(s)	298
Cfr10I	RCCGGY	1 cut(s)	581
Cfr13I	GGNCC	2 cut(s)	403, 421
Cfr9I	CCCGGG	1 cut(s)	498
ClaI	ATCGAT	1 cut(s)	514
Csp6I	GTAC	5 cut(s)	139, 246, 487, 568, 607
CviAII	CATG	5 cut(s)	45, 182, 200, 371, 395
CviJI	RGCY	8 cut(s)	72, 130, 198, 338, 404, 448, 497, 639
CviKI_1	RGCY	8 cut(s)	72, 130, 198, 338, 404, 448, 497, 639
CviQI	GTAC	5 cut(s)	139, 246, 487, 568, 607
DdeI	CTNAG	2 cut(s)	390, 449
DinI	GGCGCC	1 cut(s)	297
DpnI	GATC	3 cut(s)	98, 180, 204
DpnII	GATC	3 cut(s)	96, 178, 202
EaeI	YGGCCR	1 cut(s)	70
Eam1104I	CTCTTC	2 cut(s)	8, 600
EarI	CTCTTC	2 cut(s)	8, 600
EciI	GGCGGA	1 cut(s)	321
Eco105I	TACGTA	1 cut(s)	40
Eco31I	GGTCTC	1 cut(s)	218
Eco32I	GATATC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	421
Eco88I	CYCGRG	1 cut(s)	498
EcoRI	GAATTC	1 cut(s)	218
EcoRV	GATATC	1 cut(s)	187
EgeI	GGCGCC	1 cut(s)	297
EheI	GGCGCC	1 cut(s)	297
FaeI	CATG	5 cut(s)	48, 185, 203, 374, 398
FatI	CATG	5 cut(s)	44, 181, 199, 370, 394
FauNDI	CATATG	1 cut(s)	417
FbaI	TGATCA	2 cut(s)	178, 202
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	3 cut(s)	192, 515, 596
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	2 cut(s)	131, 560
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	214
HaeII	RGCGCY	1 cut(s)	299
HaeIII	GGCC	2 cut(s)	72, 404
HapII	CCGG	6 cut(s)	210, 236, 335, 347, 499, 582
HhaI	GCGC	1 cut(s)	298
Hin1I	GRCGYC	1 cut(s)	296
Hin1II	CATG	5 cut(s)	48, 185, 203, 374, 398
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HinfI	GANTC	2 cut(s)	309, 464
HpaII	CCGG	6 cut(s)	210, 236, 335, 347, 499, 582
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	1 cut(s)	607
Hpy188I	TCNGA	2 cut(s)	127, 473
Hpy188III	TCNNGA	4 cut(s)	182, 193, 215, 347
Hpy8I	GTNNAC	1 cut(s)	607
HpyCH4III	ACNGT	5 cut(s)	103, 226, 250, 355, 634
HpyCH4IV	ACGT	2 cut(s)	39, 541
HpyCH4V	TGCA	2 cut(s)	506, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 503
HpyF3I	CTNAG	2 cut(s)	390, 449
HpySE526I	ACGT	2 cut(s)	39, 541
Hsp92I	GRCGYC	1 cut(s)	296
Hsp92II	CATG	5 cut(s)	48, 185, 203, 374, 398
HspAI	GCGC	1 cut(s)	296
KasI	GGCGCC	1 cut(s)	295
Kpn2I	TCCGGA	1 cut(s)	346
Ksp22I	TGATCA	2 cut(s)	178, 202
Kzo9I	GATC	3 cut(s)	96, 178, 202
LguI	GCTCTTC	1 cut(s)	600
LmnI	GCTCC	3 cut(s)	127, 195, 478
LpnPI	CCDG	8 cut(s)	144, 178, 223, 249, 348, 360, 512, 595
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	2 cut(s)	493, 520
MaeI	CTAG	2 cut(s)	131, 560
MaeII	ACGT	2 cut(s)	39, 541
MaeIII	GTNAC	3 cut(s)	103, 226, 377
MalI	GATC	3 cut(s)	98, 180, 204
MbiI	CCGCTC	1 cut(s)	476
MboI	GATC	3 cut(s)	96, 178, 202
MboII	GAAGA	3 cut(s)	25, 181, 587
MhlI	GDGCHC	1 cut(s)	595
MlsI	TGGCCA	1 cut(s)	72
MluCI	AATT	3 cut(s)	32, 163, 218
MluNI	TGGCCA	1 cut(s)	72
Mly113I	GGCGCC	1 cut(s)	296
MlyI	GAGTC	1 cut(s)	473
MmeI	TCCRAC	1 cut(s)	410
MnlI	CCTC	6 cut(s)	3, 136, 233, 435, 444, 448
Mox20I	TGGCCA	1 cut(s)	72
MroI	TCCGGA	1 cut(s)	346
MscI	TGGCCA	1 cut(s)	72
MseI	TTAA	2 cut(s)	435, 492
MslI	CAYNNNNRTG	1 cut(s)	78
Msp20I	TGGCCA	1 cut(s)	72
MspI	CCGG	6 cut(s)	210, 236, 335, 347, 499, 582
MspR9I	CCNGG	4 cut(s)	210, 237, 499, 500
Mva1269I	GAATGC	1 cut(s)	122
MwoI	GCNNNNNNNGC	2 cut(s)	69, 503
NarI	GGCGCC	1 cut(s)	296
NciI	CCSGG	4 cut(s)	210, 237, 499, 500
NdeI	CATATG	1 cut(s)	417
NdeII	GATC	3 cut(s)	96, 178, 202
NlaIII	CATG	5 cut(s)	48, 185, 203, 374, 398
NlaIV	GGNNCC	3 cut(s)	197, 297, 423
NmeAIII	GCCGAG	1 cut(s)	469
NmuCI	GTSAC	2 cut(s)	103, 377
NspI	RCATGY	2 cut(s)	48, 374
PaeI	GCATGC	1 cut(s)	48
PagI	TCATGA	1 cut(s)	181
PciI	ACATGT	1 cut(s)	370
PciSI	GCTCTTC	1 cut(s)	600
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PctI	GAATGC	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	309
PflFI	GACNNNGTC	1 cut(s)	355
PfoI	TCCNGGA	1 cut(s)	235
PkrI	GCNGC	1 cut(s)	88
PleI	GAGTC	1 cut(s)	472
PluTI	GGCGCC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	472
Ppu21I	YACGTR	1 cut(s)	40
PscI	ACATGT	1 cut(s)	370
PspN4I	GGNNCC	3 cut(s)	197, 297, 423
PspPI	GGNCC	2 cut(s)	403, 421
PsyI	GACNNNGTC	1 cut(s)	355
RsaI	GTAC	5 cut(s)	140, 247, 488, 569, 608
RsaNI	GTAC	5 cut(s)	139, 246, 487, 568, 607
RseI	CAYNNNNRTG	1 cut(s)	78
SapI	GCTCTTC	1 cut(s)	600
SaqAI	TTAA	2 cut(s)	435, 492
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	3 cut(s)	96, 178, 202
Sau96I	GGNCC	2 cut(s)	403, 421
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	4 cut(s)	210, 237, 499, 500
SduI	GDGCHC	1 cut(s)	595
SetI	ASST	5 cut(s)	42, 132, 450, 492, 544
SfaNI	GCATC	2 cut(s)	493, 520
SfoI	GGCGCC	1 cut(s)	297
SinI	GGWCC	1 cut(s)	421
SmaI	CCCGGG	1 cut(s)	500
SmiMI	CAYNNNNRTG	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SnaBI	TACGTA	1 cut(s)	40
SphI	GCATGC	1 cut(s)	48
Sse9I	AATT	3 cut(s)	32, 163, 218
SsiI	CCGC	5 cut(s)	48, 306, 328, 476, 613
SspDI	GGCGCC	1 cut(s)	295
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	2 cut(s)	131, 560
StyD4I	CCNGG	4 cut(s)	208, 235, 497, 498
TaaI	ACNGT	5 cut(s)	103, 226, 250, 355, 634
TaiI	ACGT	2 cut(s)	42, 544
TaqI	TCGA	3 cut(s)	95, 216, 514
TasI	AATT	3 cut(s)	32, 163, 218
TatI	WGTACW	3 cut(s)	245, 567, 606
TfiI	GAWTC	1 cut(s)	309
Tru1I	TTAA	2 cut(s)	435, 492
Tru9I	TTAA	2 cut(s)	435, 492
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	2 cut(s)	103, 377
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	2 cut(s)	103, 377
TspDTI	ATGAA	1 cut(s)	426
TspMI	CCCGGG	1 cut(s)	498
TspRI	CASTG	1 cut(s)	106
Tth111I	GACNNNGTC	1 cut(s)	355
VpaK11BI	GGWCC	1 cut(s)	421
XapI	RAATTY	2 cut(s)	163, 218
XceI	RCATGY	2 cut(s)	48, 374
XmaI	CCCGGG	1 cut(s)	498
XspI	CTAG	2 cut(s)	131, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.