Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004390

Physical Location & Seq

Genomic Coordinates Reverse (-)

33852926 .. 33854678

Gene Structure 1753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0314700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGCTCTCTGCTTCTTCTTCTTCTTCTTCTGCTCTCTCTTTCATCTCTCCCTCTCCTCCACCACCACCGCCAATCTCTCTATCTCTTTCCCTCTGTTCACTCCACACTCTCACCCAAGCACCACTAACCTTCTCCATGACTCTCTCATTTCCAGAAAATCAGTGGTACAACCCAAAGGCACCCCTTCCTACAACTACAAGCTTCCTTTCAAATATTCCATGGCTCCCATCGTCTCCCTCCCCATAGGCACACCTCCCCAGACGCAGCAGATGGTTCTCGACACCGGAAGCCAGCTGTCCTGGATTCAGTGCCACAAGAAGGTCCTGCGGAAGGCCCCGCCTCCGGCCTCCATATTCGACCCTTCCCTCTCCTCCACCTTCTCCGTCCTCCCTTGCAACCACCCTATCTGCAAACCCCGAGTTCCCGACTTTACCCTCCCCACCACCTGCGACCAGAACCGCCTCTGCCACTACTCCTACTTCTACGCCGACGGCACGCTCGCCGAGGGCAATCTCGTCAGAGAAAAGTTCACCTTCTCCACGGCCACCAGCACCCCTCCCCTGACTCTGGGTTGCGCCCAGGACACCAGTGACACCAAGGGCATTTTGGGCATGAACCTTGGACGCTTGTCGTTTCCTTCCCAAGCCAAAATCACAAAGTTCTCCTACTGCATACCCTCCCGCCCGGCTCAAACCGGGTCCGCTTCGCCGACCGGGACTTTTTACCTCGGTAATAATCCGAACTCGGCAACTTTTCGATATGTTGACCTTTTGACTTTCAGTCAAAGTCAACGCATGCCTAATTTGGACCCCCTGGCCTACACGGTCGTGATGCTTGGGGTGAGGATAGGCGGCAACAAGTTGAGCATTTTACCTTCGGTGTTCCGGCCCGACGCGAGCGGGGCGGGTCAGACCATGATCGACTCCGGAAGTGAGTTGACTTACTTTGTGGATGAGGCCTACAACAAAGTGAAGGAAGAGATTGTTAAATTGGTGGGGCCAAAATTAAAGAAGGGGTATGTGTATGCGAACGTCGCCGACATGTGTTTTGACAGTAATGTCGGACCGTTGATAGGGGACATGGTGTTGGAGTTTGATAAAGGAGTGGAGATTGTGATAGCTAAAGAGCAAATTTTACACAATGTGGAGGGCAAAGTGTGGTGCGTGGCGATCGGGCGGTCCGACATGATCGGCGCGGCGAGTAACATAATCGGCAACGTTCATCAGCAGAATCAATGGGTGGAGTTTGATTTGGCAAATCGTAGAGTAGGGTTTGGTAAGGCGGATTGTAGCAGATCGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

434

Amino Acids

47.59

Weight (kDa)

8.73

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	77 - 234	7.6e-36	Xylanase inhibitor N-terminal
Asp	PF00026	80 - 128	2.9e-06	Eukaryotic aspartyl protease
Asp	PF00026	162 - 427	5.3e-07	Eukaryotic aspartyl protease
TAXi_C	PF14541	273 - 426	8.4e-33	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22845
fragaria_vesca	FvH4_2g22930 FvH4_4g01530
malus_domestica	MD03G1257900.v1.1 MD11G1278600.v1.1 MD13G1200800.v1.1 MD16G1200100.v1.1
prunus_persica	Prupe.1G022300_v2.0.a1 Prupe.8G234600_v2.0.a1
pyrus_communis	pycom03g20430 pycom13g17430 pycom16g16930
rosa_chinensis	RchiOBHm_Chr4g0388091 RchiOBHm_Chr6g0289891
rosa_laevigata	RLG00000010081 RLG00000012258
rosa_multiflora	Rmu_sc0001312.1_g000001 Rmu_sc0002180.1_g000029
rosa_roxburghii	Rroxscaffold_5G00334640 Rroxscaffold_7G00177490
rosa_rugosa	Rorug03G0314700 Rorug06G0208000
rosa_samantha	Rh4AG020500 Rh4BG014800 Rh4CG021100 Rh4DG015500 Rh6AG319200 Rh6CG332200 Rh6DG317900
rosa_wichuraiana	Rw0G009810 Rw4G001360 Rw6G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	455
AasI	GACNNNNNNGTC	1 cut(s)	1058
Acc36I	ACCTGC	1 cut(s)	455
AccB1I	GGYRCC	1 cut(s)	179
AccBSI	CCGCTC	1 cut(s)	900
AccII	CGCG	2 cut(s)	896, 1196
AccIII	TCCGGA	1 cut(s)	926
AclI	AACGTT	1 cut(s)	1218
AcoI	YGGCCR	1 cut(s)	543
AcsI	RAATTY	1 cut(s)	1131
AdeI	CACNNNGTG	1 cut(s)	1144
AfaI	GTAC	1 cut(s)	168
AfiI	CCNNNNNNNGG	5 cut(s)	319, 331, 343, 568, 1073
AflIII	ACRYGT	1 cut(s)	1041
AgsI	TTSAA	1 cut(s)	211
AhdI	GACNNNNNGTC	1 cut(s)	780
AjnI	CCWGG	3 cut(s)	299, 579, 813
AleI	CACNNNNGTG	1 cut(s)	827
AluBI	AGCT	3 cut(s)	202, 295, 1121
AluI	AGCT	3 cut(s)	202, 295, 1121
Alw26I	GTCTC	1 cut(s)	238
Ama87I	CYCGRG	1 cut(s)	417
Aor13HI	TCCGGA	1 cut(s)	926
AoxI	GGCC	7 cut(s)	333, 345, 543, 816, 887, 957, 998
ApeKI	GCWGC	1 cut(s)	265
ApoI	RAATTY	1 cut(s)	1131
ArsI	GACNNNNNNTTYG	2 cut(s)	1031, 1063
AspLEI	GCGC	2 cut(s)	578, 1196
AspS9I	GGNCC	8 cut(s)	322, 334, 699, 808, 888, 998, 1064, 1179
AsuC2I	CCSGG	3 cut(s)	686, 697, 715
AsuHPI	GGTGA	3 cut(s)	104, 523, 853
AvaI	CYCGRG	1 cut(s)	417
AvaII	GGWCC	5 cut(s)	322, 699, 808, 1064, 1179
BanI	GGYRCC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	2 cut(s)	236, 265
BceAI	ACGGC	2 cut(s)	508, 558
BciT130I	CCWGG	3 cut(s)	301, 581, 815
BcnI	CCSGG	3 cut(s)	686, 697, 715
BcoDI	GTCTC	1 cut(s)	238
BfuAI	ACCTGC	1 cut(s)	455
BisI	GCNGC	3 cut(s)	266, 853, 1197
BlsI	GCNGC	3 cut(s)	267, 854, 1198
Bme1390I	CCNGG	6 cut(s)	301, 581, 686, 697, 715, 815
Bme18I	GGWCC	5 cut(s)	322, 699, 808, 1064, 1179
BmeRI	GACNNNNNGTC	1 cut(s)	780
BmeT110I	CYCGRG	1 cut(s)	417
BmgT120I	GGNCC	8 cut(s)	322, 334, 699, 808, 888, 998, 1064, 1179
BmiI	GGNNCC	6 cut(s)	181, 225, 336, 700, 810, 999
BmrFI	CCNGG	6 cut(s)	301, 581, 686, 697, 715, 815
BmsI	GCATC	1 cut(s)	822
BoxI	GACNNNNGTC	1 cut(s)	628
BpuMI	CCSGG	3 cut(s)	686, 697, 715
BsaJI	CCNNGG	8 cut(s)	219, 504, 540, 579, 597, 619, 727, 813
BsaWI	WCCGGW	2 cut(s)	284, 926
Bsc4I	CCNNNNNNNGG	5 cut(s)	319, 331, 343, 568, 1073
Bse1I	ACTGG	1 cut(s)	588
BseAI	TCCGGA	1 cut(s)	926
BseBI	CCWGG	3 cut(s)	301, 581, 815
BseDI	CCNNGG	8 cut(s)	219, 504, 540, 579, 597, 619, 727, 813
BseGI	GGATG	1 cut(s)	958
BseLI	CCNNNNNNNGG	5 cut(s)	319, 331, 343, 568, 1073
BseNI	ACTGG	1 cut(s)	588
BseRI	GAGGAG	2 cut(s)	46, 361
BseXI	GCAGC	1 cut(s)	277
Bsh1236I	CGCG	2 cut(s)	896, 1196
Bsh1285I	CGRYCG	3 cut(s)	714, 828, 1173
BshFI	GGCC	7 cut(s)	335, 347, 545, 818, 889, 959, 1000
BshNI	GGYRCC	1 cut(s)	179
BsiEI	CGRYCG	3 cut(s)	714, 828, 1173
BsiHKCI	CYCGRG	1 cut(s)	417
BsiSI	CCGG	7 cut(s)	285, 344, 686, 696, 714, 886, 927
BslFI	GGGAC	2 cut(s)	730, 1091
BslI	CCNNNNNNNGG	5 cut(s)	319, 331, 343, 568, 1073
BsmAI	GTCTC	1 cut(s)	238
BsmBI	CGTCTC	1 cut(s)	238
BsmFI	GGGAC	2 cut(s)	730, 1091
BsnI	GGCC	7 cut(s)	335, 347, 545, 818, 889, 959, 1000
BsoBI	CYCGRG	1 cut(s)	417
Bsp13I	TCCGGA	1 cut(s)	926
Bsp143I	GATC	4 cut(s)	918, 1170, 1188, 1295
Bsp19I	CCATGG	1 cut(s)	219
BspANI	GGCC	7 cut(s)	335, 347, 545, 818, 889, 959, 1000
BspEI	TCCGGA	1 cut(s)	926
BspFNI	CGCG	2 cut(s)	896, 1196
BspLI	GGNNCC	6 cut(s)	181, 225, 336, 700, 810, 999
BspMI	ACCTGC	1 cut(s)	455
BspT107I	GGYRCC	1 cut(s)	179
BsrBI	CCGCTC	1 cut(s)	900
BsrI	ACTGG	1 cut(s)	588
BssECI	CCNNGG	8 cut(s)	219, 504, 540, 579, 597, 619, 727, 813
BssMI	GATC	4 cut(s)	918, 1170, 1188, 1295
BssT1I	CCWWGG	3 cut(s)	219, 597, 619
Bst2UI	CCWGG	3 cut(s)	301, 581, 815
Bst4CI	ACNGT	3 cut(s)	826, 1055, 1068
Bst6I	CTCTTC	1 cut(s)	972
BstC8I	GCNNGC	5 cut(s)	293, 497, 501, 797, 898
BstDSI	CCRYGG	2 cut(s)	219, 540
BstENI	CCTNNNNNAGG	1 cut(s)	329
BstF5I	GGATG	1 cut(s)	958
BstFNI	CGCG	2 cut(s)	896, 1196
BstHHI	GCGC	2 cut(s)	578, 1196
BstKTI	GATC	4 cut(s)	921, 1173, 1191, 1298
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	4 cut(s)	918, 1170, 1188, 1295
BstMCI	CGRYCG	3 cut(s)	714, 828, 1173
BstMWI	GCNNNNNNNGC	3 cut(s)	609, 902, 1034
BstNI	CCWGG	3 cut(s)	301, 581, 815
BstNSI	RCATGY	2 cut(s)	799, 1045
BstPAI	GACNNNNGTC	1 cut(s)	628
BstSCI	CCNGG	6 cut(s)	299, 579, 684, 695, 713, 813
BstUI	CGCG	2 cut(s)	896, 1196
BstV1I	GCAGC	1 cut(s)	277
BsuRI	GGCC	7 cut(s)	335, 347, 545, 818, 889, 959, 1000
BtgI	CCRYGG	2 cut(s)	219, 540
BtsCI	GGATG	1 cut(s)	958
BtsIMutI	CAGTG	3 cut(s)	168, 314, 595
BveI	ACCTGC	1 cut(s)	455
Cac8I	GCNNGC	5 cut(s)	293, 497, 501, 797, 898
CfoI	GCGC	2 cut(s)	578, 1196
Cfr13I	GGNCC	8 cut(s)	322, 334, 699, 808, 888, 998, 1064, 1179
CpoI	CGGWCCG	2 cut(s)	1064, 1179
CseI	GACGC	3 cut(s)	271, 633, 902
Csp6I	GTAC	1 cut(s)	167
CspI	CGGWCCG	2 cut(s)	1064, 1179
CviAII	CATG	8 cut(s)	137, 220, 613, 796, 916, 1042, 1081, 1186
CviQI	GTAC	1 cut(s)	167
DpnI	GATC	4 cut(s)	920, 1172, 1190, 1297
DpnII	GATC	4 cut(s)	918, 1170, 1188, 1295
DraIII	CACNNNGTG	1 cut(s)	1144
DrdI	GACNNNNNNGTC	1 cut(s)	1058
DriI	GACNNNNNGTC	1 cut(s)	780
DseDI	GACNNNNNNGTC	1 cut(s)	1058
EaeI	YGGCCR	1 cut(s)	543
Eam1104I	CTCTTC	1 cut(s)	972
Eam1105I	GACNNNNNGTC	1 cut(s)	780
EarI	CTCTTC	1 cut(s)	972
EciI	GGCGGA	1 cut(s)	1298
Eco130I	CCWWGG	3 cut(s)	219, 597, 619
Eco147I	AGGCCT	1 cut(s)	959
Eco47I	GGWCC	5 cut(s)	322, 699, 808, 1064, 1179
Eco88I	CYCGRG	1 cut(s)	417
EcoNI	CCTNNNNNAGG	1 cut(s)	329
EcoO109I	RGGNCCY	2 cut(s)	322, 334
EcoRII	CCWGG	3 cut(s)	299, 579, 813
EcoT14I	CCWWGG	3 cut(s)	219, 597, 619
ErhI	CCWWGG	3 cut(s)	219, 597, 619
Esp3I	CGTCTC	1 cut(s)	238
FaeI	CATG	8 cut(s)	140, 223, 616, 799, 919, 1045, 1084, 1189
FalI	AAGNNNNNCTT	2 cut(s)	518, 550
FaqI	GGGAC	2 cut(s)	730, 1091
FatI	CATG	8 cut(s)	136, 219, 612, 795, 915, 1041, 1080, 1185
FauI	CCCGC	4 cut(s)	345, 689, 893, 898
Fnu4HI	GCNGC	3 cut(s)	266, 853, 1197
FokI	GGATG	1 cut(s)	965
Fsp4HI	GCNGC	3 cut(s)	266, 853, 1197
GlaI	GCGC	2 cut(s)	577, 1195
GluI	GCNGC	3 cut(s)	266, 853, 1197
HaeIII	GGCC	7 cut(s)	335, 347, 545, 818, 889, 959, 1000
HapII	CCGG	7 cut(s)	285, 344, 686, 696, 714, 886, 927
HgaI	GACGC	3 cut(s)	271, 633, 902
HhaI	GCGC	2 cut(s)	578, 1196
Hin1II	CATG	8 cut(s)	140, 223, 616, 799, 919, 1045, 1084, 1189
Hin6I	GCGC	2 cut(s)	576, 1194
HinP1I	GCGC	2 cut(s)	576, 1194
HincII	GTYRAC	3 cut(s)	766, 791, 939
HindII	GTYRAC	3 cut(s)	766, 791, 939
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	5 cut(s)	140, 304, 565, 923, 1231
HpaII	CCGG	7 cut(s)	285, 344, 686, 696, 714, 886, 927
HphI	GGTGA	3 cut(s)	104, 523, 853
Hpy166II	GTNNAC	5 cut(s)	99, 531, 766, 791, 939
Hpy188I	TCNGA	5 cut(s)	521, 741, 912, 1064, 1183
Hpy188III	TCNNGA	5 cut(s)	153, 278, 425, 829, 927
Hpy8I	GTNNAC	5 cut(s)	99, 531, 766, 791, 939
Hpy99I	CGWCG	3 cut(s)	494, 896, 1037
HpyCH4III	ACNGT	3 cut(s)	826, 1055, 1068
HpyCH4IV	ACGT	2 cut(s)	1032, 1218
HpyCH4V	TGCA	3 cut(s)	396, 411, 672
HpyF10VI	GCNNNNNNNGC	3 cut(s)	609, 902, 1034
HpySE526I	ACGT	2 cut(s)	1032, 1218
Hsp92II	CATG	8 cut(s)	140, 223, 616, 799, 919, 1045, 1084, 1189
HspAI	GCGC	2 cut(s)	576, 1194
Kpn2I	TCCGGA	1 cut(s)	926
Kzo9I	GATC	4 cut(s)	918, 1170, 1188, 1295
LmnI	GCTCC	1 cut(s)	229
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	1 cut(s)	822
MaeII	ACGT	2 cut(s)	1032, 1218
MaeIII	GTNAC	2 cut(s)	590, 1202
MalI	GATC	4 cut(s)	920, 1172, 1190, 1297
MbiI	CCGCTC	1 cut(s)	900
MboI	GATC	4 cut(s)	918, 1170, 1188, 1295
MboII	GAAGA	6 cut(s)	7, 10, 13, 16, 19, 989
MluCI	AATT	4 cut(s)	802, 989, 1004, 1131
MlyI	GAGTC	3 cut(s)	134, 559, 917
MmeI	TCCRAC	3 cut(s)	1042, 1068, 1206
MroI	TCCGGA	1 cut(s)	926
MseI	TTAA	2 cut(s)	987, 1007
MslI	CAYNNNNRTG	1 cut(s)	827
MspA1I	CMGCKG	1 cut(s)	295
MspI	CCGG	7 cut(s)	285, 344, 686, 696, 714, 886, 927
MspR9I	CCNGG	6 cut(s)	301, 581, 686, 697, 715, 815
MvaI	CCWGG	3 cut(s)	301, 581, 815
MvnI	CGCG	2 cut(s)	896, 1196
MwoI	GCNNNNNNNGC	3 cut(s)	609, 902, 1034
NciI	CCSGG	3 cut(s)	686, 697, 715
NcoI	CCATGG	1 cut(s)	219
NdeII	GATC	4 cut(s)	918, 1170, 1188, 1295
NlaIII	CATG	8 cut(s)	140, 223, 616, 799, 919, 1045, 1084, 1189
NlaIV	GGNNCC	6 cut(s)	181, 225, 336, 700, 810, 999
NmeAIII	GCCGAG	2 cut(s)	529, 725
NmuCI	GTSAC	1 cut(s)	590
NspI	RCATGY	2 cut(s)	799, 1045
OliI	CACNNNNGTG	1 cut(s)	827
PaeI	GCATGC	1 cut(s)	799
PaqCI	CACCTGC	1 cut(s)	455
PceI	AGGCCT	1 cut(s)	959
PciI	ACATGT	1 cut(s)	1041
PcsI	WCGNNNNNNNCGW	1 cut(s)	1179
PfeI	GAWTC	2 cut(s)	304, 1231
PfoI	TCCNGGA	1 cut(s)	299
PkrI	GCNGC	3 cut(s)	267, 854, 1198
Ple19I	CGATCG	1 cut(s)	1173
PleI	GAGTC	3 cut(s)	134, 559, 917
PpsI	GAGTC	3 cut(s)	134, 559, 917
PpuMI	RGGWCCY	1 cut(s)	322
PscI	ACATGT	1 cut(s)	1041
PshAI	GACNNNNGTC	1 cut(s)	628
Psp1406I	AACGTT	1 cut(s)	1218
Psp5II	RGGWCCY	1 cut(s)	322
Psp6I	CCWGG	3 cut(s)	299, 579, 813
PspGI	CCWGG	3 cut(s)	299, 579, 813
PspN4I	GGNNCC	6 cut(s)	181, 225, 336, 700, 810, 999
PspPI	GGNCC	8 cut(s)	322, 334, 699, 808, 888, 998, 1064, 1179
PspPPI	RGGWCCY	1 cut(s)	322
PvuI	CGATCG	1 cut(s)	1173
PvuII	CAGCTG	1 cut(s)	295
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
RseI	CAYNNNNRTG	1 cut(s)	827
Rsr2I	CGGWCCG	2 cut(s)	1064, 1179
RsrII	CGGWCCG	2 cut(s)	1064, 1179
SaqAI	TTAA	2 cut(s)	987, 1007
SatI	GCNGC	3 cut(s)	266, 853, 1197
Sau3AI	GATC	4 cut(s)	918, 1170, 1188, 1295
Sau96I	GGNCC	8 cut(s)	322, 334, 699, 808, 888, 998, 1064, 1179
SchI	GAGTC	3 cut(s)	134, 559, 917
ScrFI	CCNGG	6 cut(s)	301, 581, 686, 697, 715, 815
SfaNI	GCATC	1 cut(s)	822
SinI	GGWCC	5 cut(s)	322, 699, 808, 1064, 1179
SmiMI	CAYNNNNRTG	1 cut(s)	827
SphI	GCATGC	1 cut(s)	799
Sse9I	AATT	4 cut(s)	802, 989, 1004, 1131
SseBI	AGGCCT	1 cut(s)	959
SspI	AATATT	1 cut(s)	215
StuI	AGGCCT	1 cut(s)	959
StyD4I	CCNGG	6 cut(s)	299, 579, 684, 695, 713, 813
StyI	CCWWGG	3 cut(s)	219, 597, 619
TaaI	ACNGT	3 cut(s)	826, 1055, 1068
TaiI	ACGT	2 cut(s)	1035, 1221
TaqI	TCGA	4 cut(s)	279, 357, 757, 921
TasI	AATT	4 cut(s)	802, 989, 1004, 1131
TauI	GCSGC	2 cut(s)	855, 1199
TfiI	GAWTC	2 cut(s)	304, 1231
Tru1I	TTAA	2 cut(s)	987, 1007
Tru9I	TTAA	2 cut(s)	987, 1007
TscAI	CASTG	3 cut(s)	168, 314, 595
TseFI	GTSAC	1 cut(s)	590
TseI	GCWGC	1 cut(s)	265
Tsp45I	GTSAC	1 cut(s)	590
TspDTI	ATGAA	3 cut(s)	32, 629, 1211
TspGWI	ACGGA	1 cut(s)	373
TspRI	CASTG	3 cut(s)	168, 314, 595
VpaK11BI	GGWCC	5 cut(s)	322, 699, 808, 1064, 1179
XagI	CCTNNNNNAGG	1 cut(s)	329
XapI	RAATTY	1 cut(s)	1131
XceI	RCATGY	2 cut(s)	799, 1045
XcmI	CCANNNNNNNNNTGG	2 cut(s)	160, 604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.