Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004390

Physical Location & Seq

Genomic Coordinates Forward (+)

13179169 .. 13182521

Gene Structure 3353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g17430.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGATCCGGAGAGGATCCTTTTCCAATCGAACGCCACGTATCAGTCTGCGTTTTCACGGACGTCAGTAAACCAAAAACGCGAATGGTTTGAAAACCTACACATAGACCACCTTCCCCTCTCCTCCTCCTCCAACTTCAAGCTGTCGTCTTGGAGTTTGAATATTTCAGACCCGAAAACAGAAAAGACAAAAAAAAAAAAAAAAATGGAGGGAAGGGCGAGGGGTTTGACGCTGATTGGCCTTCTTTTGGTGAGCTTCGTCGGAAAGATCGCATCGCTATCGGTGACAGTGAACGACGTTGAATGCGTGTACGAGTACGTGCTTTACGAAGGCGATACCGTTTCGGGCAACTTCGTGGTCGTCGATCACGATATTTTCTGGGGCGCCGATCATCCCGGCCTCGATTTAATCGTGACATCTCCTGGGGATAATACGGTGCACACTTCAAAGGGAACATCTGGTGATAAGTTTGAGTTTAAAGCCCCAAGAAGCGGAATGTACAAATTTTGTTTTCACAATCCTTACTCAACACCAGAGACTGTTTCTTTTAACATACATGTTGGTCATATTCCCAACGAGCACAATATTGCCAAAGATGAACATCTAGACCCAATAAATGTTAAAATTGCTGAGCTTAGAGAAGCATTGGAGTCAGTTACATTAGAGCAGAAGTACTTGAAAGCACGTGATGTTCGACATCGTCATACAAATGAGAGCACAAGGAGGCGGGTTGTGTTGTATACAGTGGGAGAGTATCTTGCGCTAGCTGCTGCGAGTGCCTTGCAAGTCGTTTACATTCGCAAACTTTTCAGCAAATCGGTTGCATACAATCGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

280

Amino Acids

31.58

Weight (kDa)

8.67

Isoelectric Point (pI)

32.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22845
fragaria_vesca	FvH4_2g22930 FvH4_4g01530
malus_domestica	MD03G1257900.v1.1 MD11G1278600.v1.1 MD13G1200800.v1.1 MD16G1200100.v1.1
prunus_persica	Prupe.1G022300_v2.0.a1 Prupe.8G234600_v2.0.a1
pyrus_communis	pycom03g20430 pycom13g17430 pycom16g16930
rosa_chinensis	RchiOBHm_Chr4g0388091 RchiOBHm_Chr6g0289891
rosa_laevigata	RLG00000010081 RLG00000012258
rosa_multiflora	Rmu_sc0001312.1_g000001 Rmu_sc0002180.1_g000029
rosa_roxburghii	Rroxscaffold_5G00334640 Rroxscaffold_7G00177490
rosa_rugosa	Rorug03G0314700 Rorug06G0208000
rosa_samantha	Rh4AG020500 Rh4BG014800 Rh4CG021100 Rh4DG015500 Rh6AG319200 Rh6CG332200 Rh6DG317900
rosa_wichuraiana	Rw0G009810 Rw4G001360 Rw6G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	65
AccB1I	GGYRCC	1 cut(s)	383
AccI	GTMKAC	1 cut(s)	740
AccII	CGCG	1 cut(s)	81
AccIII	TCCGGA	1 cut(s)	7
AciI	CCGC	2 cut(s)	492, 727
AclWI	GGATC	3 cut(s)	10, 12, 23
AcsI	RAATTY	1 cut(s)	503
AcvI	CACGTG	1 cut(s)	686
AcyI	GRCGYC	2 cut(s)	62, 384
AfaI	GTAC	4 cut(s)	311, 317, 500, 674
AfiI	CCNNNNNNNGG	2 cut(s)	247, 491
AflIII	ACRYGT	1 cut(s)	556
AgsI	TTSAA	6 cut(s)	92, 139, 160, 302, 447, 679
AjnI	CCWGG	1 cut(s)	421
AluBI	AGCT	4 cut(s)	142, 255, 634, 767
AluI	AGCT	4 cut(s)	142, 255, 634, 767
Alw21I	GWGCWC	3 cut(s)	441, 582, 719
Alw26I	GTCTC	1 cut(s)	530
Alw44I	GTGCAC	1 cut(s)	437
AlwI	GGATC	3 cut(s)	10, 12, 23
AlwNI	CAGNNNCTG	1 cut(s)	539
Aor13HI	TCCGGA	1 cut(s)	7
AoxI	GGCC	2 cut(s)	238, 397
ApaLI	GTGCAC	1 cut(s)	437
ApeKI	GCWGC	2 cut(s)	767, 770
ApoI	RAATTY	1 cut(s)	503
AspLEI	GCGC	2 cut(s)	386, 763
AsuC2I	CCSGG	1 cut(s)	396
AsuHPI	GGTGA	3 cut(s)	262, 295, 473
AsuNHI	GCTAGC	1 cut(s)	763
BaeGI	GKGCMC	1 cut(s)	441
BamHI	GGATCC	2 cut(s)	4, 15
BanI	GGYRCC	1 cut(s)	383
BbrPI	CACGTG	1 cut(s)	686
Bbv12I	GWGCWC	3 cut(s)	441, 582, 719
BbvI	GCAGC	2 cut(s)	754, 757
BcgI	CGANNNNNNTGC	4 cut(s)	261, 295, 763, 797
BciT130I	CCWGG	1 cut(s)	423
BcnI	CCSGG	1 cut(s)	396
BcoDI	GTCTC	1 cut(s)	530
BfaI	CTAG	2 cut(s)	605, 764
BfoI	RGCGCY	1 cut(s)	387
BisI	GCNGC	2 cut(s)	768, 771
BlpI	GCTNAGC	1 cut(s)	630
BlsI	GCNGC	2 cut(s)	769, 772
BmcAI	AGTACT	1 cut(s)	674
Bme1390I	CCNGG	2 cut(s)	396, 423
BmiI	GGNNCC	3 cut(s)	6, 17, 385
BmrFI	CCNGG	2 cut(s)	396, 423
BmsI	GCATC	1 cut(s)	281
BmtI	GCTAGC	1 cut(s)	767
Bpu1102I	GCTNAGC	1 cut(s)	630
BpuMI	CCSGG	1 cut(s)	396
BsaAI	YACGTR	3 cut(s)	39, 319, 686
BsaBI	GATNNNNATC	1 cut(s)	600
BsaHI	GRCGYC	2 cut(s)	62, 384
BsaJI	CCNNGG	1 cut(s)	422
BsaWI	WCCGGW	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 491
Bse8I	GATNNNNATC	1 cut(s)	600
BseAI	TCCGGA	1 cut(s)	7
BseBI	CCWGG	1 cut(s)	423
BseDI	CCNNGG	1 cut(s)	422
BseGI	GGATG	1 cut(s)	391
BseJI	GATNNNNATC	1 cut(s)	600
BseLI	CCNNNNNNNGG	2 cut(s)	247, 491
BseMII	CTCAG	1 cut(s)	621
BseRI	GAGGAG	3 cut(s)	112, 115, 118
BseSI	GKGCMC	1 cut(s)	441
BseXI	GCAGC	2 cut(s)	754, 757
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	240, 399
BshNI	GGYRCC	1 cut(s)	383
BsiHKAI	GWGCWC	3 cut(s)	441, 582, 719
BsiSI	CCGG	2 cut(s)	8, 396
BslI	CCNNNNNNNGG	2 cut(s)	247, 491
BsmAI	GTCTC	1 cut(s)	530
BsmI	GAATGC	1 cut(s)	308
BsnI	GGCC	2 cut(s)	240, 399
Bsp1286I	GDGCHC	3 cut(s)	441, 582, 719
Bsp13I	TCCGGA	1 cut(s)	7
Bsp1407I	TGTACA	1 cut(s)	498
Bsp143I	GATC	5 cut(s)	4, 15, 267, 364, 388
Bsp1720I	GCTNAGC	1 cut(s)	630
BspACI	CCGC	2 cut(s)	492, 727
BspANI	GGCC	2 cut(s)	240, 399
BspCNI	CTCAG	1 cut(s)	622
BspEI	TCCGGA	1 cut(s)	7
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	3 cut(s)	6, 17, 385
BspOI	GCTAGC	1 cut(s)	767
BspPI	GGATC	3 cut(s)	10, 12, 23
BspT107I	GGYRCC	1 cut(s)	383
BsrGI	TGTACA	1 cut(s)	498
BssECI	CCNNGG	1 cut(s)	422
BssMI	GATC	5 cut(s)	4, 15, 267, 364, 388
BssNAI	GTATAC	1 cut(s)	741
BssNI	GRCGYC	2 cut(s)	62, 384
Bst1107I	GTATAC	1 cut(s)	741
Bst2UI	CCWGG	1 cut(s)	423
Bst4CI	ACNGT	5 cut(s)	289, 340, 436, 541, 745
BstACI	GRCGYC	2 cut(s)	62, 384
BstAUI	TGTACA	1 cut(s)	498
BstBAI	YACGTR	3 cut(s)	39, 319, 686
BstC8I	GCNNGC	1 cut(s)	765
BstDEI	CTNAG	2 cut(s)	630, 635
BstF5I	GGATG	1 cut(s)	391
BstFNI	CGCG	1 cut(s)	81
BstH2I	RGCGCY	1 cut(s)	387
BstHHI	GCGC	2 cut(s)	386, 763
BstKTI	GATC	5 cut(s)	7, 18, 270, 367, 391
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	5 cut(s)	4, 15, 267, 364, 388
BstMWI	GCNNNNNNNGC	2 cut(s)	767, 776
BstNI	CCWGG	1 cut(s)	423
BstNSI	RCATGY	1 cut(s)	560
BstSCI	CCNGG	2 cut(s)	394, 421
BstSLI	GKGCMC	1 cut(s)	441
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	754, 757
BstX2I	RGATCY	2 cut(s)	4, 15
BstYI	RGATCY	2 cut(s)	4, 15
BstZ17I	GTATAC	1 cut(s)	741
BsuRI	GGCC	2 cut(s)	240, 399
BtgZI	GCGATG	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	391
BtsIMutI	CAGTG	2 cut(s)	294, 750
Cac8I	GCNNGC	1 cut(s)	765
CaiI	CAGNNNCTG	1 cut(s)	539
CfoI	GCGC	2 cut(s)	386, 763
CseI	GACGC	1 cut(s)	238
Csp6I	GTAC	4 cut(s)	310, 316, 499, 673
CviAII	CATG	1 cut(s)	557
CviJI	RGCY	7 cut(s)	142, 240, 255, 399, 482, 634, 767
CviKI_1	RGCY	7 cut(s)	142, 240, 255, 399, 482, 634, 767
CviQI	GTAC	4 cut(s)	310, 316, 499, 673
DdeI	CTNAG	2 cut(s)	630, 635
DinI	GGCGCC	1 cut(s)	385
DpnI	GATC	5 cut(s)	6, 17, 269, 366, 390
DpnII	GATC	5 cut(s)	4, 15, 267, 364, 388
DraI	TTTAAA	1 cut(s)	478
Eco72I	CACGTG	1 cut(s)	686
EcoRII	CCWGG	1 cut(s)	421
EgeI	GGCGCC	1 cut(s)	385
EheI	GGCGCC	1 cut(s)	385
FaeI	CATG	1 cut(s)	560
FaiI	YATR	7 cut(s)	104, 554, 558, 567, 705, 741, 826
FatI	CATG	1 cut(s)	556
FauI	CCCGC	1 cut(s)	720
FblI	GTMKAC	1 cut(s)	740
Fnu4HI	GCNGC	2 cut(s)	768, 771
FokI	GGATG	1 cut(s)	378
Fsp4HI	GCNGC	2 cut(s)	768, 771
FspBI	CTAG	2 cut(s)	605, 764
GlaI	GCGC	2 cut(s)	385, 762
GluI	GCNGC	2 cut(s)	768, 771
HaeII	RGCGCY	1 cut(s)	387
HaeIII	GGCC	2 cut(s)	240, 399
HapII	CCGG	2 cut(s)	8, 396
HgaI	GACGC	1 cut(s)	238
HhaI	GCGC	2 cut(s)	386, 763
Hin1I	GRCGYC	2 cut(s)	62, 384
Hin1II	CATG	1 cut(s)	560
Hin6I	GCGC	2 cut(s)	384, 761
HinP1I	GCGC	2 cut(s)	384, 761
HinfI	GANTC	1 cut(s)	650
HpaII	CCGG	2 cut(s)	8, 396
HphI	GGTGA	3 cut(s)	262, 295, 473
Hpy166II	GTNNAC	6 cut(s)	70, 292, 310, 439, 741, 793
Hpy188I	TCNGA	2 cut(s)	169, 263
Hpy188III	TCNNGA	4 cut(s)	8, 368, 412, 605
Hpy8I	GTNNAC	6 cut(s)	70, 292, 310, 439, 741, 793
Hpy99I	CGWCG	3 cut(s)	263, 299, 365
HpyAV	CCTTC	4 cut(s)	122, 207, 251, 323
HpyCH4III	ACNGT	5 cut(s)	289, 340, 436, 541, 745
HpyCH4IV	ACGT	5 cut(s)	38, 62, 297, 318, 685
HpyCH4V	TGCA	3 cut(s)	439, 784, 824
HpyF10VI	GCNNNNNNNGC	2 cut(s)	767, 776
HpyF3I	CTNAG	2 cut(s)	630, 635
HpySE526I	ACGT	5 cut(s)	38, 62, 297, 318, 685
Hsp92I	GRCGYC	2 cut(s)	62, 384
Hsp92II	CATG	1 cut(s)	560
HspAI	GCGC	2 cut(s)	384, 761
KasI	GGCGCC	1 cut(s)	383
Kpn2I	TCCGGA	1 cut(s)	7
Kzo9I	GATC	5 cut(s)	4, 15, 267, 364, 388
LpnPI	CCDG	7 cut(s)	21, 364, 408, 409, 435, 444, 546
Lsp1109I	GCAGC	2 cut(s)	754, 757
LweI	GCATC	1 cut(s)	281
MaeI	CTAG	2 cut(s)	605, 764
MaeII	ACGT	5 cut(s)	38, 62, 297, 318, 685
MaeIII	GTNAC	3 cut(s)	283, 412, 655
MalI	GATC	5 cut(s)	6, 17, 269, 366, 390
MboI	GATC	5 cut(s)	4, 15, 267, 364, 388
MflI	RGATCY	2 cut(s)	4, 15
MhlI	GDGCHC	3 cut(s)	441, 582, 719
MluCI	AATT	2 cut(s)	503, 624
Mly113I	GGCGCC	1 cut(s)	384
MlyI	GAGTC	1 cut(s)	659
MmeI	TCCRAC	2 cut(s)	156, 241
MnlI	CCTC	9 cut(s)	6, 128, 133, 136, 139, 202, 213, 410, 717
MroI	TCCGGA	1 cut(s)	7
MseI	TTAA	4 cut(s)	407, 477, 549, 621
MslI	CAYNNNNRTG	1 cut(s)	708
MspI	CCGG	2 cut(s)	8, 396
MspR9I	CCNGG	2 cut(s)	396, 423
Mva1269I	GAATGC	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	423
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	2 cut(s)	767, 776
NarI	GGCGCC	1 cut(s)	384
NciI	CCSGG	1 cut(s)	396
NdeII	GATC	5 cut(s)	4, 15, 267, 364, 388
NheI	GCTAGC	1 cut(s)	763
NlaIII	CATG	1 cut(s)	560
NlaIV	GGNNCC	3 cut(s)	6, 17, 385
NmuCI	GTSAC	2 cut(s)	283, 412
NspI	RCATGY	1 cut(s)	560
PciI	ACATGT	1 cut(s)	556
PcsI	WCGNNNNNNNCGW	7 cut(s)	35, 303, 324, 360, 366, 408, 691
PctI	GAATGC	1 cut(s)	308
PflFI	GACNNNGTC	1 cut(s)	699
PkrI	GCNGC	2 cut(s)	769, 772
PleI	GAGTC	1 cut(s)	658
PluTI	GGCGCC	1 cut(s)	387
PmaCI	CACGTG	1 cut(s)	686
PmlI	CACGTG	1 cut(s)	686
PpsI	GAGTC	1 cut(s)	658
Ppu21I	YACGTR	3 cut(s)	39, 319, 686
PscI	ACATGT	1 cut(s)	556
Psp6I	CCWGG	1 cut(s)	421
PspCI	CACGTG	1 cut(s)	686
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	3 cut(s)	6, 17, 385
PstNI	CAGNNNCTG	1 cut(s)	539
PsuI	RGATCY	2 cut(s)	4, 15
PsyI	GACNNNGTC	1 cut(s)	699
RsaI	GTAC	4 cut(s)	311, 317, 500, 674
RsaNI	GTAC	4 cut(s)	310, 316, 499, 673
RseI	CAYNNNNRTG	1 cut(s)	708
SaqAI	TTAA	4 cut(s)	407, 477, 549, 621
SatI	GCNGC	2 cut(s)	768, 771
Sau3AI	GATC	5 cut(s)	4, 15, 267, 364, 388
ScaI	AGTACT	1 cut(s)	674
SchI	GAGTC	1 cut(s)	659
ScrFI	CCNGG	2 cut(s)	396, 423
SduI	GDGCHC	3 cut(s)	441, 582, 719
SfaNI	GCATC	1 cut(s)	281
SfoI	GGCGCC	1 cut(s)	385
SmiMI	CAYNNNNRTG	1 cut(s)	708
Sse9I	AATT	2 cut(s)	503, 624
SsiI	CCGC	2 cut(s)	492, 727
SspDI	GGCGCC	1 cut(s)	383
SspI	AATATT	2 cut(s)	163, 586
SspMI	CTAG	2 cut(s)	605, 764
StyD4I	CCNGG	2 cut(s)	394, 421
TaaI	ACNGT	5 cut(s)	289, 340, 436, 541, 745
TaiI	ACGT	5 cut(s)	41, 65, 300, 321, 688
TaqI	TCGA	4 cut(s)	29, 363, 402, 694
TasI	AATT	2 cut(s)	503, 624
TatI	WGTACW	2 cut(s)	498, 672
Tru1I	TTAA	4 cut(s)	407, 477, 549, 621
Tru9I	TTAA	4 cut(s)	407, 477, 549, 621
TscAI	CASTG	2 cut(s)	294, 750
TseFI	GTSAC	2 cut(s)	283, 412
TseI	GCWGC	2 cut(s)	767, 770
Tsp45I	GTSAC	2 cut(s)	283, 412
TspDTI	ATGAA	1 cut(s)	612
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	2 cut(s)	294, 750
Tth111I	GACNNNGTC	1 cut(s)	699
VneI	GTGCAC	1 cut(s)	437
XapI	RAATTY	1 cut(s)	503
XbaI	TCTAGA	1 cut(s)	604
XceI	RCATGY	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	740
XspI	CTAG	2 cut(s)	605, 764
ZraI	GACGTC	1 cut(s)	63
ZrmI	AGTACT	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.