Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003136

Physical Location & Seq

Genomic Coordinates Forward (+)

21901060 .. 21902151

Gene Structure 1092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G256900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGATCCCTCCCTCCTCCTACCTTATAAATATATCATTAGGCTTGCCATATCATAAGGTCCGAATCACAACACATCTTTTGCTCAATTTCTTACTTGTTCCGAATCATAACACAGTCATGGCTACCATCAAAGTCTATGGAAGCACCTATTCCACTGCTGCAATGCGAGTTTTTGCTGCCCTTTATGAGAAAGACATCGAGTTCGAGTTTGTTCCGGTTGACATGAGAGCTGGGGAACATAAAAAGGAGCCTATCATTTCCCTCAACCCATTTGGTCAAATTCCAGCTTTTGAAGATGGAGATCTTAAGCTCTTTGAATCAAGGGCAATTACACAATACATTGCCCATGAGTATTTCGACAAGGGAACCCAGCTAGTGATCCGAGACTCAAAGAAGATGGCAATTCTATCAGTGTGGACGGAGGTGGAGGGTCAAAAGTTCGACCCGGCAGCCTCAAAACTGACCTGGGAGCTAGGCATAAAGCCGCTGCTTGGCATGCCCACAGACTCGGCAGTTGTGGAGGAATATGAAGCCAAGTTGGCTGCGGTTCTTGATGTTTATGAGGCTCGTCTGGCTCAGTCGAAATACTTGGGAGGTGACAGCTTCACCTTGGCAGATCTTCACCACCTTCCAACCATAAATTACTTGATGGGAACACAATCGAAGAAGCTGTTCGAATCCCGGCCCCATGTTAGCGCATGGGTAGCTGATATCACTGCAAGGCCAGCTTGGAATAAGGTCATTGCCATGCGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

253

Amino Acids

28.33

Weight (kDa)

6.45

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02920 AT1G02930 AT1G02930 AT2G02930 AT4G02520
fragaria_vesca	FvH4_2g25210 FvH4_2g25210 FvH4_2g25210 FvH4_2g25210 FvH4_2g25210
malus_domestica	MD03G1282700.v1.1 MD03G1282900.v1.1
prunus_persica	Prupe.8G256900_v2.0.a1
pyrus_communis	pycom03g22330 pycom03g22340 pycom03g22350 pycom03g22370
rosa_chinensis	RchiOBHm_Chr6g0293321 RchiOBHm_Chr6g0293341
rosa_laevigata	RLG00000011954 RLG00000011959
rosa_multiflora	Rmu_co8438929.1_g000001 Rmu_sc0006269.1_g000031 Rmu_sc0006269.1_g000034
rosa_roxburghii	Rroxscaffold_7G00174240 Rroxscaffold_7G00174250
rosa_rugosa	Rorug06G0234500 Rorug06G0234700 Rorug06G0234800
rosa_samantha	Rh6AG347400 Rh6BG354600 Rh6BG355000 Rh6CG361200 Rh6DG347800 Rh6DG348400
rosa_wichuraiana	Rw6G030230 Rw6G030240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	26
AciI	CCGC	2 cut(s)	485, 545
AclWI	GGATC	1 cut(s)	373
AcsI	RAATTY	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	491
AflII	CTTAAG	1 cut(s)	305
AgsI	TTSAA	2 cut(s)	293, 317
AjnI	CCWGG	1 cut(s)	464
Alw26I	GTCTC	1 cut(s)	378
AlwI	GGATC	1 cut(s)	373
AoxI	GGCC	2 cut(s)	683, 722
ApeKI	GCWGC	5 cut(s)	158, 176, 449, 487, 542
ApoI	RAATTY	1 cut(s)	279
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
Asp700I	GAANNNNTTC	1 cut(s)	671
AspLEI	GCGC	1 cut(s)	698
AspS9I	GGNCC	2 cut(s)	58, 684
AsuC2I	CCSGG	2 cut(s)	446, 682
AsuHPI	GGTGA	3 cut(s)	598, 608, 614
AsuII	TTCGAA	1 cut(s)	675
AvaII	GGWCC	1 cut(s)	58
BbvI	GCAGC	5 cut(s)	145, 163, 461, 474, 529
BccI	CCATC	4 cut(s)	134, 290, 391, 643
BciT130I	CCWGG	1 cut(s)	466
BcnI	CCSGG	2 cut(s)	446, 682
BcoDI	GTCTC	1 cut(s)	378
BfaI	CTAG	3 cut(s)	374, 473, 757
BfrI	CTTAAG	1 cut(s)	305
BglI	GCCNNNNNGGC	1 cut(s)	539
BglII	AGATCT	2 cut(s)	301, 616
BisI	GCNGC	6 cut(s)	159, 177, 450, 485, 488, 543
BlsI	GCNGC	6 cut(s)	160, 178, 451, 486, 489, 544
Bme1390I	CCNGG	3 cut(s)	446, 466, 682
Bme18I	GGWCC	1 cut(s)	58
BmgT120I	GGNCC	2 cut(s)	58, 684
BmiI	GGNNCC	3 cut(s)	249, 367, 686
BmrFI	CCNGG	3 cut(s)	446, 466, 682
Bpu14I	TTCGAA	1 cut(s)	675
BpuMI	CCSGG	2 cut(s)	446, 682
BsaBI	GATNNNNATC	1 cut(s)	300
BsaJI	CCNNGG	2 cut(s)	465, 609
BsaWI	WCCGGW	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
Bse3DI	GCAATG	3 cut(s)	168, 339, 741
Bse8I	GATNNNNATC	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	466
BseDI	CCNNGG	2 cut(s)	465, 609
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseMI	GCAATG	3 cut(s)	168, 339, 741
BseMII	CTCAG	1 cut(s)	590
BseRI	GAGGAG	1 cut(s)	4
BseXI	GCAGC	5 cut(s)	145, 163, 461, 474, 529
BseYI	CCCAGC	2 cut(s)	230, 369
BshFI	GGCC	2 cut(s)	685, 724
BsiSI	CCGG	3 cut(s)	215, 446, 682
BslI	CCNNNNNNNGG	1 cut(s)	491
BsmAI	GTCTC	1 cut(s)	378
BsnI	GGCC	2 cut(s)	685, 724
Bsp119I	TTCGAA	1 cut(s)	675
Bsp143I	GATC	4 cut(s)	3, 301, 378, 616
BspACI	CCGC	2 cut(s)	485, 545
BspANI	GGCC	2 cut(s)	685, 724
BspCNI	CTCAG	1 cut(s)	589
BspLI	GGNNCC	3 cut(s)	249, 367, 686
BspPI	GGATC	1 cut(s)	373
BspT104I	TTCGAA	1 cut(s)	675
BspTI	CTTAAG	1 cut(s)	305
BsrDI	GCAATG	3 cut(s)	168, 339, 741
BssECI	CCNNGG	2 cut(s)	465, 609
BssMI	GATC	4 cut(s)	3, 301, 378, 616
BssT1I	CCWWGG	1 cut(s)	609
Bst2UI	CCWGG	1 cut(s)	466
Bst4CI	ACNGT	1 cut(s)	115
BstAFI	CTTAAG	1 cut(s)	305
BstBI	TTCGAA	1 cut(s)	675
BstC8I	GCNNGC	3 cut(s)	44, 497, 726
BstDEI	CTNAG	1 cut(s)	576
BstHHI	GCGC	1 cut(s)	698
BstKTI	GATC	4 cut(s)	6, 304, 381, 619
BstMAI	GTCTC	1 cut(s)	378
BstMBI	GATC	4 cut(s)	3, 301, 378, 616
BstMWI	GCNNNNNNNGC	5 cut(s)	496, 539, 572, 704, 725
BstNI	CCWGG	1 cut(s)	466
BstNSI	RCATGY	1 cut(s)	499
BstSCI	CCNGG	3 cut(s)	444, 464, 680
BstV1I	GCAGC	5 cut(s)	145, 163, 461, 474, 529
BstX2I	RGATCY	2 cut(s)	301, 616
BstYI	RGATCY	2 cut(s)	301, 616
BsuRI	GGCC	2 cut(s)	685, 724
BtsI	GCAGTG	2 cut(s)	153, 714
BtsIMutI	CAGTG	3 cut(s)	153, 417, 714
Cac8I	GCNNGC	3 cut(s)	44, 497, 726
CfoI	GCGC	1 cut(s)	698
Cfr13I	GGNCC	2 cut(s)	58, 684
CviAII	CATG	7 cut(s)	118, 223, 347, 496, 689, 699, 748
DdeI	CTNAG	1 cut(s)	576
DpnI	GATC	4 cut(s)	5, 303, 380, 618
DpnII	GATC	4 cut(s)	3, 301, 378, 616
Eco130I	CCWWGG	1 cut(s)	609
Eco32I	GATATC	1 cut(s)	712
Eco47I	GGWCC	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	464
EcoRV	GATATC	1 cut(s)	712
EcoT14I	CCWWGG	1 cut(s)	609
ErhI	CCWWGG	1 cut(s)	609
FaeI	CATG	7 cut(s)	121, 226, 350, 499, 692, 702, 751
FalI	AAGNNNNNCTT	2 cut(s)	712, 744
FatI	CATG	7 cut(s)	117, 222, 346, 495, 688, 698, 747
Fnu4HI	GCNGC	6 cut(s)	159, 177, 450, 485, 488, 543
Fsp4HI	GCNGC	6 cut(s)	159, 177, 450, 485, 488, 543
FspBI	CTAG	3 cut(s)	374, 473, 757
GlaI	GCGC	1 cut(s)	697
GluI	GCNGC	6 cut(s)	159, 177, 450, 485, 488, 543
GsaI	CCCAGC	2 cut(s)	234, 373
HaeIII	GGCC	2 cut(s)	685, 724
HapII	CCGG	3 cut(s)	215, 446, 682
HhaI	GCGC	1 cut(s)	698
Hin1II	CATG	7 cut(s)	121, 226, 350, 499, 692, 702, 751
Hin6I	GCGC	1 cut(s)	696
HinP1I	GCGC	1 cut(s)	696
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	6 cut(s)	63, 103, 317, 386, 506, 677
HpaII	CCGG	3 cut(s)	215, 446, 682
HphI	GGTGA	3 cut(s)	598, 608, 614
Hpy166II	GTNNAC	2 cut(s)	220, 417
Hpy188I	TCNGA	3 cut(s)	62, 102, 383
Hpy188III	TCNNGA	1 cut(s)	551
Hpy8I	GTNNAC	2 cut(s)	220, 417
HpyAV	CCTTC	1 cut(s)	638
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	2 cut(s)	161, 719
HpyF10VI	GCNNNNNNNGC	5 cut(s)	496, 539, 572, 704, 725
HpyF3I	CTNAG	1 cut(s)	576
Hsp92II	CATG	7 cut(s)	121, 226, 350, 499, 692, 702, 751
HspAI	GCGC	1 cut(s)	696
Kzo9I	GATC	4 cut(s)	3, 301, 378, 616
LmnI	GCTCC	2 cut(s)	247, 469
Lsp1109I	GCAGC	5 cut(s)	145, 163, 461, 474, 529
MaeI	CTAG	3 cut(s)	374, 473, 757
MaeIII	GTNAC	1 cut(s)	596
MalI	GATC	4 cut(s)	5, 303, 380, 618
MboI	GATC	4 cut(s)	3, 301, 378, 616
MboII	GAAGA	4 cut(s)	305, 406, 611, 676
MflI	RGATCY	2 cut(s)	301, 616
MluCI	AATT	5 cut(s)	85, 279, 327, 402, 640
MlyI	GAGTC	2 cut(s)	380, 500
MmeI	TCCRAC	1 cut(s)	656
MroXI	GAANNNNTTC	1 cut(s)	671
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	2 cut(s)	116, 746
MspA1I	CMGCKG	1 cut(s)	487
MspCI	CTTAAG	1 cut(s)	305
MspI	CCGG	3 cut(s)	215, 446, 682
MspR9I	CCNGG	3 cut(s)	446, 466, 682
MvaI	CCWGG	1 cut(s)	466
MwoI	GCNNNNNNNGC	5 cut(s)	496, 539, 572, 704, 725
NciI	CCSGG	2 cut(s)	446, 682
NdeII	GATC	4 cut(s)	3, 301, 378, 616
NlaIII	CATG	7 cut(s)	121, 226, 350, 499, 692, 702, 751
NlaIV	GGNNCC	3 cut(s)	249, 367, 686
NmeAIII	GCCGAG	1 cut(s)	488
NmuCI	GTSAC	1 cut(s)	596
NspI	RCATGY	1 cut(s)	499
NspV	TTCGAA	1 cut(s)	675
PaeI	GCATGC	1 cut(s)	499
PdmI	GAANNNNTTC	1 cut(s)	671
PfeI	GAWTC	4 cut(s)	63, 103, 317, 677
PkrI	GCNGC	6 cut(s)	160, 178, 451, 486, 489, 544
PleI	GAGTC	2 cut(s)	380, 500
PpsI	GAGTC	2 cut(s)	380, 500
PsiI	TTATAA	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	464
PspFI	CCCAGC	2 cut(s)	230, 369
PspGI	CCWGG	1 cut(s)	464
PspN4I	GGNNCC	3 cut(s)	249, 367, 686
PspPI	GGNCC	2 cut(s)	58, 684
PsuI	RGATCY	2 cut(s)	301, 616
RseI	CAYNNNNRTG	2 cut(s)	116, 746
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	6 cut(s)	159, 177, 450, 485, 488, 543
Sau3AI	GATC	4 cut(s)	3, 301, 378, 616
Sau96I	GGNCC	2 cut(s)	58, 684
SchI	GAGTC	2 cut(s)	380, 500
ScrFI	CCNGG	3 cut(s)	446, 466, 682
SfuI	TTCGAA	1 cut(s)	675
SinI	GGWCC	1 cut(s)	58
SmiMI	CAYNNNNRTG	2 cut(s)	116, 746
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
SphI	GCATGC	1 cut(s)	499
Sse9I	AATT	5 cut(s)	85, 279, 327, 402, 640
SsiI	CCGC	2 cut(s)	485, 545
SspMI	CTAG	3 cut(s)	374, 473, 757
StyD4I	CCNGG	3 cut(s)	444, 464, 680
StyI	CCWWGG	1 cut(s)	609
TaaI	ACNGT	1 cut(s)	115
TaqI	TCGA	7 cut(s)	198, 204, 357, 441, 581, 662, 675
TasI	AATT	5 cut(s)	85, 279, 327, 402, 640
TauI	GCSGC	1 cut(s)	487
TfiI	GAWTC	4 cut(s)	63, 103, 317, 677
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	3 cut(s)	160, 417, 721
TseFI	GTSAC	1 cut(s)	596
TseI	GCWGC	5 cut(s)	158, 176, 449, 487, 542
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	1 cut(s)	543
TspGWI	ACGGA	1 cut(s)	434
TspRI	CASTG	3 cut(s)	160, 417, 721
Vha464I	CTTAAG	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	58
XapI	RAATTY	1 cut(s)	279
XceI	RCATGY	1 cut(s)	499
XmnI	GAANNNNTTC	1 cut(s)	671
XspI	CTAG	3 cut(s)	374, 473, 757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.