Rroxscaffold_7G00174240
ERF Family

Belongs to the GST superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003136
Physical Location & Seq
Reverse (-)
13973153 .. 13974040
888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00174240.1

Sequence Viewer

Length: 636 bp
ATGGCCGGCATCAAACTCCATGGAAACGCTCTCTCAACGGCAGCATCGCGAGTTTTGGCTGCCCTCTATGAGAAAGAGGTTGAATTCGAGCTTGTTCCGATAGACATGATAGCTGGTGAACATAAAAAGGAGTCCTTCCTTGCCCTTAATCCATTTGGTCAAGTTCCCGCTTTTGAAGACGGAGATCTTCAGCTCTTTGCAATTACACAATACATTGCCCGTGAGTACGCTTCAAAGGGAACCCCGCTGATATTCCCAGACTCGAAGAAGATGGCAATTCTATCAGTGTGGGCAGAGGTGGAGGCTCATACGTTCGACCCACCAGCCTCAAAACTGAAAGATGAGCTTGCTATGAAGCCTTTCCTAGGCTTGGCCACAGACTTCGCAGTTGTGGAGGAATTTGAAGCTAAGTTGGGTAAAATTCTCGATGTCTATGAAACTCGTCTCGGCCAATCGAAATACTTGGGAGGTGATTGCTTCAGCTTGGCAGATCTTCACCACCTTCCAATAATACACTACTTGATGGGCACACAAGCCAAGAAGCTGTTCGAGTGCCGCCCAAATGTTAGCGCATGGGTAGCTGATATCACAGCAAGGCCTGCTTGGAAAAAAGTCGTTGCCATGAGAGCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418
Pfam Domains
Protein Families
GST_C GST_N

Protein Analysis

211

Amino Acids

23.4

Weight (kDa)

5.88

Isoelectric Point (pI)

29.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 4 - 74 3.7e-14 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 6 - 65 8.4e-08 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 12 - 62 1.1e-08 Glutathione S-transferase, N-terminal domain
GST_C PF00043 125 - 200 2.3e-13 Glutathione S-transferase, C-terminal domain
GST_C_2 PF13410 129 - 194 2.3e-06 Glutathione S-transferase, C-terminal domain
GST_C_3 PF14497 134 - 204 7.7e-07 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 49
AciI CCGC 3 cut(s) 168, 245, 556
AcoI YGGCCR 3 cut(s) 3, 372, 448
AcsI RAATTY 3 cut(s) 83, 398, 420
AcuI CTGAAG 2 cut(s) 173, 463
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 2 cut(s) 365, 370
AgsI TTSAA 4 cut(s) 83, 176, 234, 404
AjuI GAANNNNNNNTTGG 2 cut(s) 530, 562
AluBI AGCT 9 cut(s) 91, 113, 193, 346, 407, 483, 544, 581, 629
AluI AGCT 9 cut(s) 91, 113, 193, 346, 407, 483, 544, 581, 629
Alw26I GTCTC 1 cut(s) 449
AoxI GGCC 4 cut(s) 3, 372, 448, 596
ApeKI GCWGC 2 cut(s) 41, 59
ApoI RAATTY 3 cut(s) 83, 398, 420
Asp700I GAANNNNTTC 2 cut(s) 359, 545
AspA2I CCTAGG 1 cut(s) 364
AspLEI GCGC 1 cut(s) 572
AsuHPI GGTGA 3 cut(s) 128, 482, 488
AvrII CCTAGG 1 cut(s) 364
BaeGI GKGCMC 1 cut(s) 530
BalI TGGCCA 1 cut(s) 374
BbsI GAAGAC 1 cut(s) 183
BbvI GCAGC 2 cut(s) 46, 53
BccI CCATC 2 cut(s) 265, 517
BceAI ACGGC 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 449
BfaI CTAG 1 cut(s) 365
BglII AGATCT 2 cut(s) 184, 490
BisI GCNGC 3 cut(s) 42, 60, 556
BlnI CCTAGG 1 cut(s) 364
BlsI GCNGC 3 cut(s) 43, 61, 557
BmiI GGNNCC 1 cut(s) 241
BmsI GCATC 2 cut(s) 18, 53
BpiI GAAGAC 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 19, 364
Bsc4I CCNNNNNNNGG 2 cut(s) 365, 370
Bse118I RCCGGY 1 cut(s) 5
Bse3DI GCAATG 1 cut(s) 213
BseDI CCNNGG 2 cut(s) 19, 364
BseLI CCNNNNNNNGG 2 cut(s) 365, 370
BseMI GCAATG 1 cut(s) 213
BseSI GKGCMC 1 cut(s) 530
BseXI GCAGC 2 cut(s) 46, 53
Bsh1236I CGCG 1 cut(s) 49
BshFI GGCC 4 cut(s) 5, 374, 450, 598
BsiSI CCGG 1 cut(s) 6
BslI CCNNNNNNNGG 2 cut(s) 365, 370
BsmAI GTCTC 1 cut(s) 449
BsmBI CGTCTC 1 cut(s) 449
BsnI GGCC 4 cut(s) 5, 374, 450, 598
Bsp1286I GDGCHC 1 cut(s) 530
Bsp143I GATC 2 cut(s) 184, 490
Bsp19I CCATGG 1 cut(s) 19
Bsp68I TCGCGA 1 cut(s) 49
BspACI CCGC 3 cut(s) 168, 245, 556
BspANI GGCC 4 cut(s) 5, 374, 450, 598
BspFNI CGCG 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 241
BsrDI GCAATG 1 cut(s) 213
BsrFI RCCGGY 1 cut(s) 5
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 2 cut(s) 19, 364
BssMI GATC 2 cut(s) 184, 490
BssT1I CCWWGG 2 cut(s) 19, 364
BstAPI GCANNNNNTGC 1 cut(s) 599
BstC8I GCNNGC 3 cut(s) 7, 348, 600
BstDEI CTNAG 1 cut(s) 408
BstDSI CCRYGG 1 cut(s) 19
BstENI CCTNNNNNAGG 1 cut(s) 363
BstFNI CGCG 1 cut(s) 49
BstHHI GCGC 1 cut(s) 572
BstKTI GATC 2 cut(s) 187, 493
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 2 cut(s) 184, 490
BstMWI GCNNNNNNNGC 3 cut(s) 578, 599, 626
BstSLI GKGCMC 1 cut(s) 530
BstUI CGCG 1 cut(s) 49
BstV1I GCAGC 2 cut(s) 46, 53
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 2 cut(s) 184, 490
BstYI RGATCY 2 cut(s) 184, 490
BsuRI GGCC 4 cut(s) 5, 374, 450, 598
BtgI CCRYGG 1 cut(s) 19
BtgZI GCGATG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 291
BtuMI TCGCGA 1 cut(s) 49
Cac8I GCNNGC 3 cut(s) 7, 348, 600
CfoI GCGC 1 cut(s) 572
Cfr10I RCCGGY 1 cut(s) 5
Csp6I GTAC 1 cut(s) 226
CviAII CATG 4 cut(s) 20, 106, 573, 622
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 1 cut(s) 408
DpnI GATC 2 cut(s) 186, 492
DpnII GATC 2 cut(s) 184, 490
EaeI YGGCCR 3 cut(s) 3, 372, 448
Eco130I CCWWGG 2 cut(s) 19, 364
Eco147I AGGCCT 1 cut(s) 598
Eco32I GATATC 1 cut(s) 586
Eco57I CTGAAG 2 cut(s) 173, 463
EcoNI CCTNNNNNAGG 1 cut(s) 363
EcoRI GAATTC 1 cut(s) 83
EcoRV GATATC 1 cut(s) 586
EcoT14I CCWWGG 2 cut(s) 19, 364
ErhI CCWWGG 2 cut(s) 19, 364
Esp3I CGTCTC 1 cut(s) 449
FaeI CATG 4 cut(s) 23, 109, 576, 625
FaiI YATR 9 cut(s) 21, 69, 107, 123, 309, 353, 435, 574, 623
FalI AAGNNNNNCTT 6 cut(s) 119, 151, 330, 362, 586, 618
FatI CATG 4 cut(s) 19, 105, 572, 621
FauI CCCGC 2 cut(s) 175, 252
Fnu4HI GCNGC 3 cut(s) 42, 60, 556
Fsp4HI GCNGC 3 cut(s) 42, 60, 556
FspBI CTAG 1 cut(s) 365
GlaI GCGC 1 cut(s) 571
GluI GCNGC 3 cut(s) 42, 60, 556
HaeIII GGCC 4 cut(s) 5, 374, 450, 598
HapII CCGG 1 cut(s) 6
HhaI GCGC 1 cut(s) 572
Hin1II CATG 4 cut(s) 23, 109, 576, 625
Hin6I GCGC 1 cut(s) 570
HinP1I GCGC 1 cut(s) 570
HinfI GANTC 2 cut(s) 131, 260
HpaII CCGG 1 cut(s) 6
HphI GGTGA 3 cut(s) 128, 482, 488
Hpy166II GTNNAC 1 cut(s) 119
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 2 cut(s) 48, 425
Hpy8I GTNNAC 1 cut(s) 119
HpyAV CCTTC 2 cut(s) 145, 512
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 1 cut(s) 200
HpyF10VI GCNNNNNNNGC 3 cut(s) 578, 599, 626
HpyF3I CTNAG 1 cut(s) 408
HpySE526I ACGT 1 cut(s) 311
Hsp92II CATG 4 cut(s) 23, 109, 576, 625
HspAI GCGC 1 cut(s) 570
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Kzo9I GATC 2 cut(s) 184, 490
LpnPI CCDG 5 cut(s) 19, 99, 270, 336, 612
Lsp1109I GCAGC 2 cut(s) 46, 53
LweI GCATC 2 cut(s) 18, 53
MaeI CTAG 1 cut(s) 365
MaeII ACGT 1 cut(s) 311
MalI GATC 2 cut(s) 186, 492
MboI GATC 2 cut(s) 184, 490
MboII GAAGA 5 cut(s) 179, 188, 277, 280, 485
MflI RGATCY 2 cut(s) 184, 490
MhlI GDGCHC 1 cut(s) 530
MlsI TGGCCA 1 cut(s) 374
MluCI AATT 5 cut(s) 83, 201, 276, 398, 420
MluNI TGGCCA 1 cut(s) 374
MlyI GAGTC 2 cut(s) 140, 254
MnlI CCTC 7 cut(s) 70, 74, 289, 295, 337, 388, 461
Mox20I TGGCCA 1 cut(s) 374
MroNI GCCGGC 1 cut(s) 5
MroXI GAANNNNTTC 2 cut(s) 359, 545
MscI TGGCCA 1 cut(s) 374
MseI TTAA 1 cut(s) 147
Msp20I TGGCCA 1 cut(s) 374
MspA1I CMGCKG 1 cut(s) 247
MspI CCGG 1 cut(s) 6
MvnI CGCG 1 cut(s) 49
MwoI GCNNNNNNNGC 3 cut(s) 578, 599, 626
NaeI GCCGGC 1 cut(s) 7
NcoI CCATGG 1 cut(s) 19
NdeII GATC 2 cut(s) 184, 490
NgoMIV GCCGGC 1 cut(s) 5
NlaIII CATG 4 cut(s) 23, 109, 576, 625
NlaIV GGNNCC 1 cut(s) 241
NmeAIII GCCGAG 1 cut(s) 426
NruI TCGCGA 1 cut(s) 49
PceI AGGCCT 1 cut(s) 598
PdiI GCCGGC 1 cut(s) 7
PdmI GAANNNNTTC 2 cut(s) 359, 545
PkrI GCNGC 3 cut(s) 43, 61, 557
PleI GAGTC 2 cut(s) 139, 254
PpsI GAGTC 2 cut(s) 139, 254
PspN4I GGNNCC 1 cut(s) 241
PsuI RGATCY 2 cut(s) 184, 490
RruI TCGCGA 1 cut(s) 49
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 3 cut(s) 42, 60, 556
Sau3AI GATC 2 cut(s) 184, 490
SchI GAGTC 2 cut(s) 140, 254
SduI GDGCHC 1 cut(s) 530
SfaNI GCATC 2 cut(s) 18, 53
Sse9I AATT 5 cut(s) 83, 201, 276, 398, 420
SseBI AGGCCT 1 cut(s) 598
SsiI CCGC 3 cut(s) 168, 245, 556
SspMI CTAG 1 cut(s) 365
StuI AGGCCT 1 cut(s) 598
StyI CCWWGG 2 cut(s) 19, 364
TaiI ACGT 1 cut(s) 314
TaqI TCGA 6 cut(s) 87, 263, 315, 426, 455, 549
TasI AATT 5 cut(s) 83, 201, 276, 398, 420
TauI GCSGC 1 cut(s) 558
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 1 cut(s) 291
TseI GCWGC 2 cut(s) 41, 59
TspDTI ATGAA 2 cut(s) 368, 450
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 1 cut(s) 291
XagI CCTNNNNNAGG 1 cut(s) 363
XapI RAATTY 3 cut(s) 83, 398, 420
XmaJI CCTAGG 1 cut(s) 364
XmnI GAANNNNTTC 2 cut(s) 359, 545
XspI CTAG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.