Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003136

Physical Location & Seq

Genomic Coordinates Forward (+)

54789197 .. 54790672

Gene Structure 1476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG347400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAAGATAGAGTTGCTTCGACATATTCTCTCTTTTATGTTCTTACGTTTCTTTGTTTGCAATTCAATCCAGCCATTTGGTCAAGTTCCAGCTTTTGAAGACGGAGATCTTCAGCTCTTTGAGTCGAGAGCAATTACACAATACATTGCCCATGAGTATGCTCCAAAGGGAACCCCGCTGATTTTCCCAGACTCAAAGAAGATGGCAATTCTATCAGTGTGGACAGAGGTGGAGGCTCAAAAATACGACCCAGTAGCTTCAAAACTGACATTTGAGCTAGTTATAAAACCTCTGATGCTTGGCTTGGCCACAGACTTCACAGTCGTGGAGGAATTTGAAGCTAAGATGGGTACAGTTCTCGATGTCTATGAGGCTCGTCTGGGTAAATCGAAATACTTGGGAGGTGATTGCTTCAGCTTGGCAGATCTTCACCACCTTCCAACCACAGACTACTTGATGGGAACACAAGTCAAGAAGCTGTTCGAGTGCCGCCCAAATGTTAGCGCATGGGTAGCTGATATCACAGCAAGGCCTGCTTGGAAAAAAGTCGTTGCCATGAAAGCTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

189

Amino Acids

21.41

Weight (kDa)

6.52

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	23 - 50	5.7e-08	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	88 - 178	1.1e-13	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02920 AT1G02930 AT1G02930 AT2G02930 AT4G02520
fragaria_vesca	FvH4_2g25210 FvH4_2g25210 FvH4_2g25210 FvH4_2g25210 FvH4_2g25210
malus_domestica	MD03G1282700.v1.1 MD03G1282900.v1.1
prunus_persica	Prupe.8G256900_v2.0.a1
pyrus_communis	pycom03g22330 pycom03g22340 pycom03g22350 pycom03g22370
rosa_chinensis	RchiOBHm_Chr6g0293321 RchiOBHm_Chr6g0293341
rosa_laevigata	RLG00000011954 RLG00000011959
rosa_multiflora	Rmu_co8438929.1_g000001 Rmu_sc0006269.1_g000031 Rmu_sc0006269.1_g000034
rosa_roxburghii	Rroxscaffold_7G00174240 Rroxscaffold_7G00174250
rosa_rugosa	Rorug06G0234500 Rorug06G0234700 Rorug06G0234800
rosa_samantha	Rh6AG347400 Rh6BG354600 Rh6BG355000 Rh6CG361200 Rh6DG347800 Rh6DG348400
rosa_wichuraiana	Rw6G030230 Rw6G030240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	284
AasI	GACNNNNNNGTC	1 cut(s)	320
AciI	CCGC	2 cut(s)	176, 490
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	332
AcuI	CTGAAG	2 cut(s)	95, 397
AfaI	GTAC	1 cut(s)	352
AgsI	TTSAA	4 cut(s)	66, 98, 261, 338
AleI	CACNNNNGTG	1 cut(s)	323
AluBI	AGCT	9 cut(s)	92, 115, 257, 277, 341, 417, 478, 515, 563
AluI	AGCT	9 cut(s)	92, 115, 257, 277, 341, 417, 478, 515, 563
AoxI	GGCC	2 cut(s)	306, 530
ApoI	RAATTY	1 cut(s)	332
Asp700I	GAANNNNTTC	1 cut(s)	479
AspLEI	GCGC	1 cut(s)	506
AsuHPI	GGTGA	2 cut(s)	416, 422
BalI	TGGCCA	1 cut(s)	308
BbsI	GAAGAC	1 cut(s)	105
BccI	CCATC	3 cut(s)	196, 340, 451
BfaI	CTAG	1 cut(s)	278
BglII	AGATCT	2 cut(s)	106, 424
BisI	GCNGC	1 cut(s)	490
BlsI	GCNGC	1 cut(s)	491
BmiI	GGNNCC	1 cut(s)	172
BmrI	ACTGGG	1 cut(s)	245
BmsI	GCATC	1 cut(s)	285
BmuI	ACTGGG	1 cut(s)	245
BpiI	GAAGAC	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	251
Bse3DI	GCAATG	1 cut(s)	144
BseMI	GCAATG	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	251
BshFI	GGCC	2 cut(s)	308, 532
BsnI	GGCC	2 cut(s)	308, 532
Bsp143I	GATC	2 cut(s)	106, 424
BspACI	CCGC	2 cut(s)	176, 490
BspANI	GGCC	2 cut(s)	308, 532
BspLI	GGNNCC	1 cut(s)	172
BsrDI	GCAATG	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	251
BssMI	GATC	2 cut(s)	106, 424
Bst4CI	ACNGT	2 cut(s)	322, 355
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstC8I	GCNNGC	1 cut(s)	534
BstDEI	CTNAG	1 cut(s)	342
BstHHI	GCGC	1 cut(s)	506
BstKTI	GATC	2 cut(s)	109, 427
BstMBI	GATC	2 cut(s)	106, 424
BstMWI	GCNNNNNNNGC	3 cut(s)	512, 533, 560
BstV2I	GAAGAC	1 cut(s)	105
BstX2I	RGATCY	2 cut(s)	106, 424
BstXI	CCANNNNNNTGG	1 cut(s)	77
BstYI	RGATCY	2 cut(s)	106, 424
BsuRI	GGCC	2 cut(s)	308, 532
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	534
CfoI	GCGC	1 cut(s)	506
Csp6I	GTAC	1 cut(s)	351
CviAII	CATG	3 cut(s)	152, 507, 556
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	2 cut(s)	108, 426
DpnII	GATC	2 cut(s)	106, 424
DrdI	GACNNNNNNGTC	1 cut(s)	320
DseDI	GACNNNNNNGTC	1 cut(s)	320
EaeI	YGGCCR	1 cut(s)	306
Eco147I	AGGCCT	1 cut(s)	532
Eco32I	GATATC	1 cut(s)	520
Eco57I	CTGAAG	2 cut(s)	95, 397
EcoRV	GATATC	1 cut(s)	520
FaeI	CATG	3 cut(s)	155, 510, 559
FaiI	YATR	8 cut(s)	24, 38, 153, 159, 284, 369, 508, 557
FalI	AAGNNNNNCTT	2 cut(s)	520, 552
FatI	CATG	3 cut(s)	151, 506, 555
FauI	CCCGC	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	490
Fsp4HI	GCNGC	1 cut(s)	490
FspBI	CTAG	1 cut(s)	278
GlaI	GCGC	1 cut(s)	505
GluI	GCNGC	1 cut(s)	490
HaeIII	GGCC	2 cut(s)	308, 532
HhaI	GCGC	1 cut(s)	506
Hin1II	CATG	3 cut(s)	155, 510, 559
Hin6I	GCGC	1 cut(s)	504
HinP1I	GCGC	1 cut(s)	504
HinfI	GANTC	2 cut(s)	122, 191
HphI	GGTGA	2 cut(s)	416, 422
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	1 cut(s)	294
Hpy188III	TCNNGA	3 cut(s)	126, 359, 472
Hpy8I	GTNNAC	1 cut(s)	222
HpyAV	CCTTC	1 cut(s)	446
HpyCH4III	ACNGT	2 cut(s)	322, 355
HpyCH4IV	ACGT	1 cut(s)	46
HpyCH4V	TGCA	1 cut(s)	60
HpyF10VI	GCNNNNNNNGC	3 cut(s)	512, 533, 560
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	1 cut(s)	46
Hsp92II	CATG	3 cut(s)	155, 510, 559
HspAI	GCGC	1 cut(s)	504
Kzo9I	GATC	2 cut(s)	106, 424
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	6 cut(s)	83, 102, 201, 264, 365, 546
LweI	GCATC	1 cut(s)	285
MaeI	CTAG	1 cut(s)	278
MaeII	ACGT	1 cut(s)	46
MalI	GATC	2 cut(s)	108, 426
MboI	GATC	2 cut(s)	106, 424
MboII	GAAGA	5 cut(s)	16, 101, 110, 211, 419
MflI	RGATCY	2 cut(s)	106, 424
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	4 cut(s)	61, 132, 207, 332
MluNI	TGGCCA	1 cut(s)	308
MlyI	GAGTC	2 cut(s)	131, 185
MmeI	TCCRAC	1 cut(s)	464
MnlI	CCTC	6 cut(s)	220, 226, 300, 322, 364, 395
Mox20I	TGGCCA	1 cut(s)	308
MroXI	GAANNNNTTC	1 cut(s)	479
MscI	TGGCCA	1 cut(s)	308
MslI	CAYNNNNRTG	2 cut(s)	156, 323
Msp20I	TGGCCA	1 cut(s)	308
MspA1I	CMGCKG	1 cut(s)	178
MwoI	GCNNNNNNNGC	3 cut(s)	512, 533, 560
NdeII	GATC	2 cut(s)	106, 424
NlaIII	CATG	3 cut(s)	155, 510, 559
NlaIV	GGNNCC	1 cut(s)	172
OliI	CACNNNNGTG	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	532
PdmI	GAANNNNTTC	1 cut(s)	479
PkrI	GCNGC	1 cut(s)	491
PleI	GAGTC	2 cut(s)	130, 185
PpsI	GAGTC	2 cut(s)	130, 185
PsiI	TTATAA	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	172
PsuI	RGATCY	2 cut(s)	106, 424
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
RseI	CAYNNNNRTG	2 cut(s)	156, 323
SatI	GCNGC	1 cut(s)	490
Sau3AI	GATC	2 cut(s)	106, 424
SchI	GAGTC	2 cut(s)	131, 185
SfaNI	GCATC	1 cut(s)	285
SmiMI	CAYNNNNRTG	2 cut(s)	156, 323
Sse9I	AATT	4 cut(s)	61, 132, 207, 332
SseBI	AGGCCT	1 cut(s)	532
SsiI	CCGC	2 cut(s)	176, 490
SspMI	CTAG	1 cut(s)	278
StuI	AGGCCT	1 cut(s)	532
TaaI	ACNGT	2 cut(s)	322, 355
TaiI	ACGT	1 cut(s)	49
TaqI	TCGA	5 cut(s)	19, 125, 360, 389, 483
TasI	AATT	4 cut(s)	61, 132, 207, 332
TauI	GCSGC	1 cut(s)	492
TscAI	CASTG	1 cut(s)	222
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	222
XapI	RAATTY	1 cut(s)	332
XmnI	GAANNNNTTC	1 cut(s)	479
XspI	CTAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.