Rh6BG354600
ERF Family

Belongs to the GST superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003136
Physical Location & Seq
Forward (+)
58539780 .. 58542247
2468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG354600.1

Sequence Viewer

Length: 648 bp
ATGGCCGGCATCAAAGTCCATGGAACCCCTTTCTCAACGGCAGCAGCTCGAGTTTTGGCTACCCTCTATGAGAAAGAGGTTGAATTCGAGTTTGTTCCGATAGACATGAGAGCTGGTGAACATAAAAAGGAGTCCTTCCTTGCCCTCAATCCATTTGGTCAAGTTCCAGCTTTTGAAGACGGGGATCTTCAGCTCTTTGAGTCAAGAGCAATTACACAATACATTGCCCATGAGTATGCTCCAAAGGGAACCCGGCTGATTTTCCAAGACTCAAAGAAGATGGCAATTCTATCGGTGTGGACAGAGGTGGAGGCTCAAAAATACGACCCAGTAGCTTCAAAACTGACATTTGAGCTAGTTATAAAACCTCTGGTACTTGGCTTGGCCACAGACTTCACAGTCGTGGAGGAATTTGAAGCTAAGTTGGGTACAGTTCTCGATGTCTATGAGACTCGTCTGGGCAAATCGAAATACTTGGGAGGTGATTGCTTCAGCTTGGCAGATCTTCACCACCTTCCAACCACAGACTACTTGATGGGAACACAAGCCAAGAAGCTGTTCGAGTGCCGCCCAAATGTTAGCGCATGGGTAGCTGATATCACAGCAAGGCCTGCTTGGAAAAAAGTCGTTGCCATGAGAGCTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418
Pfam Domains
Protein Families
GST_C GST_N

Protein Analysis

215

Amino Acids

24.04

Weight (kDa)

6.09

Isoelectric Point (pI)

25.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 4 - 76 4.1e-21 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 7 - 81 1.4e-14 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 11 - 77 2e-12 Glutathione S-transferase, N-terminal domain
GST_C PF00043 115 - 204 2.4e-13 Glutathione S-transferase, C-terminal domain
GST_C_3 PF14497 138 - 208 4e-06 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 362
AasI GACNNNNNNGTC 1 cut(s) 398
AciI CCGC 1 cut(s) 568
AclWI GGATC 1 cut(s) 192
AcoI YGGCCR 2 cut(s) 3, 384
AcsI RAATTY 2 cut(s) 83, 410
AcuI CTGAAG 2 cut(s) 173, 475
AfaI GTAC 2 cut(s) 375, 430
AgsI TTSAA 4 cut(s) 83, 176, 339, 416
AjuI GAANNNNNNNTTGG 2 cut(s) 542, 574
AleI CACNNNNGTG 1 cut(s) 401
Alw21I GWGCWC 1 cut(s) 643
Alw26I GTCTC 1 cut(s) 443
AlwI GGATC 1 cut(s) 192
Ama87I CYCGRG 1 cut(s) 48
AoxI GGCC 3 cut(s) 3, 384, 608
ApeKI GCWGC 2 cut(s) 41, 44
ApoI RAATTY 2 cut(s) 83, 410
Asp700I GAANNNNTTC 1 cut(s) 557
AspLEI GCGC 1 cut(s) 584
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 3 cut(s) 128, 494, 500
AvaI CYCGRG 1 cut(s) 48
BalI TGGCCA 1 cut(s) 386
BanII GRGCYC 1 cut(s) 643
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 643
BbvI GCAGC 2 cut(s) 53, 56
BccI CCATC 2 cut(s) 274, 529
BceAI ACGGC 1 cut(s) 54
BcgI CGANNNNNNTGC 2 cut(s) 273, 307
BcnI CCSGG 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 443
BfaI CTAG 1 cut(s) 356
BglII AGATCT 1 cut(s) 502
BisI GCNGC 3 cut(s) 42, 45, 568
BlsI GCNGC 3 cut(s) 43, 46, 569
Bme1390I CCNGG 1 cut(s) 253
BmeT110I CYCGRG 1 cut(s) 48
BmiI GGNNCC 2 cut(s) 25, 250
BmrFI CCNGG 1 cut(s) 253
BmrI ACTGGG 1 cut(s) 323
BmsI GCATC 1 cut(s) 18
BmuI ACTGGG 1 cut(s) 323
BpiI GAAGAC 1 cut(s) 183
BpuMI CCSGG 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 19
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 329
Bse3DI GCAATG 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 19
BseMI GCAATG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 329
BseXI GCAGC 2 cut(s) 53, 56
BshFI GGCC 3 cut(s) 5, 386, 610
BsiHKAI GWGCWC 1 cut(s) 643
BsiHKCI CYCGRG 1 cut(s) 48
BsiSI CCGG 2 cut(s) 6, 253
BsmAI GTCTC 1 cut(s) 443
BsnI GGCC 3 cut(s) 5, 386, 610
BsoBI CYCGRG 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 643
Bsp143I GATC 2 cut(s) 184, 502
Bsp19I CCATGG 1 cut(s) 19
BspACI CCGC 1 cut(s) 568
BspANI GGCC 3 cut(s) 5, 386, 610
BspLI GGNNCC 2 cut(s) 25, 250
BspPI GGATC 1 cut(s) 192
BsrDI GCAATG 1 cut(s) 222
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 1 cut(s) 329
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 2 cut(s) 184, 502
BssT1I CCWWGG 1 cut(s) 19
Bst4CI ACNGT 2 cut(s) 400, 433
BstAPI GCANNNNNTGC 1 cut(s) 611
BstC8I GCNNGC 2 cut(s) 7, 612
BstDEI CTNAG 1 cut(s) 420
BstDSI CCRYGG 1 cut(s) 19
BstHHI GCGC 1 cut(s) 584
BstKTI GATC 2 cut(s) 187, 505
BstMAI GTCTC 1 cut(s) 443
BstMBI GATC 2 cut(s) 184, 502
BstMWI GCNNNNNNNGC 3 cut(s) 590, 611, 638
BstSCI CCNGG 1 cut(s) 251
BstV1I GCAGC 2 cut(s) 53, 56
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 2 cut(s) 184, 502
BstYI RGATCY 2 cut(s) 184, 502
BsuRI GGCC 3 cut(s) 5, 386, 610
BtgI CCRYGG 1 cut(s) 19
Cac8I GCNNGC 2 cut(s) 7, 612
CfoI GCGC 1 cut(s) 584
Cfr10I RCCGGY 1 cut(s) 5
Csp6I GTAC 2 cut(s) 374, 429
CviAII CATG 5 cut(s) 20, 106, 230, 585, 634
CviQI GTAC 2 cut(s) 374, 429
DdeI CTNAG 1 cut(s) 420
DpnI GATC 2 cut(s) 186, 504
DpnII GATC 2 cut(s) 184, 502
DrdI GACNNNNNNGTC 1 cut(s) 398
DseDI GACNNNNNNGTC 1 cut(s) 398
EaeI YGGCCR 2 cut(s) 3, 384
Ecl136II GAGCTC 1 cut(s) 641
Eco130I CCWWGG 1 cut(s) 19
Eco147I AGGCCT 1 cut(s) 610
Eco24I GRGCYC 1 cut(s) 643
Eco32I GATATC 1 cut(s) 598
Eco53kI GAGCTC 1 cut(s) 641
Eco57I CTGAAG 2 cut(s) 173, 475
Eco88I CYCGRG 1 cut(s) 48
EcoICRI GAGCTC 1 cut(s) 641
EcoRI GAATTC 1 cut(s) 83
EcoRV GATATC 1 cut(s) 598
EcoT14I CCWWGG 1 cut(s) 19
EcoT38I GRGCYC 1 cut(s) 643
ErhI CCWWGG 1 cut(s) 19
FaeI CATG 5 cut(s) 23, 109, 233, 588, 637
FalI AAGNNNNNCTT 4 cut(s) 119, 151, 598, 630
FatI CATG 5 cut(s) 19, 105, 229, 584, 633
Fnu4HI GCNGC 3 cut(s) 42, 45, 568
FriOI GRGCYC 1 cut(s) 643
Fsp4HI GCNGC 3 cut(s) 42, 45, 568
FspBI CTAG 1 cut(s) 356
GlaI GCGC 1 cut(s) 583
GluI GCNGC 3 cut(s) 42, 45, 568
HaeIII GGCC 3 cut(s) 5, 386, 610
HapII CCGG 2 cut(s) 6, 253
HhaI GCGC 1 cut(s) 584
Hin1II CATG 5 cut(s) 23, 109, 233, 588, 637
Hin6I GCGC 1 cut(s) 582
HinP1I GCGC 1 cut(s) 582
HinfI GANTC 4 cut(s) 131, 200, 269, 451
HpaII CCGG 2 cut(s) 6, 253
HphI GGTGA 3 cut(s) 128, 494, 500
Hpy166II GTNNAC 2 cut(s) 119, 300
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 2 cut(s) 204, 437
Hpy8I GTNNAC 2 cut(s) 119, 300
HpyAV CCTTC 2 cut(s) 145, 524
HpyCH4III ACNGT 2 cut(s) 400, 433
HpyF10VI GCNNNNNNNGC 3 cut(s) 590, 611, 638
HpyF3I CTNAG 1 cut(s) 420
Hsp92II CATG 5 cut(s) 23, 109, 233, 588, 637
HspAI GCGC 1 cut(s) 582
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Kzo9I GATC 2 cut(s) 184, 502
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 8 cut(s) 19, 99, 180, 266, 342, 356, 443, 624
Lsp1109I GCAGC 2 cut(s) 53, 56
LweI GCATC 1 cut(s) 18
MaeI CTAG 1 cut(s) 356
MalI GATC 2 cut(s) 186, 504
MboI GATC 2 cut(s) 184, 502
MboII GAAGA 4 cut(s) 179, 188, 289, 497
MflI RGATCY 2 cut(s) 184, 502
MhlI GDGCHC 1 cut(s) 643
MlsI TGGCCA 1 cut(s) 386
MluCI AATT 4 cut(s) 83, 210, 285, 410
MluNI TGGCCA 1 cut(s) 386
MlyI GAGTC 4 cut(s) 140, 209, 263, 445
MmeI TCCRAC 1 cut(s) 542
MnlI CCTC 8 cut(s) 70, 74, 155, 298, 304, 378, 400, 473
Mox20I TGGCCA 1 cut(s) 386
MroNI GCCGGC 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 557
MscI TGGCCA 1 cut(s) 386
MslI CAYNNNNRTG 2 cut(s) 234, 401
Msp20I TGGCCA 1 cut(s) 386
MspI CCGG 2 cut(s) 6, 253
MspR9I CCNGG 1 cut(s) 253
MwoI GCNNNNNNNGC 3 cut(s) 590, 611, 638
NaeI GCCGGC 1 cut(s) 7
NciI CCSGG 1 cut(s) 253
NcoI CCATGG 1 cut(s) 19
NdeII GATC 2 cut(s) 184, 502
NgoMIV GCCGGC 1 cut(s) 5
NlaIII CATG 5 cut(s) 23, 109, 233, 588, 637
NlaIV GGNNCC 2 cut(s) 25, 250
OliI CACNNNNGTG 1 cut(s) 401
PaeR7I CTCGAG 1 cut(s) 48
PceI AGGCCT 1 cut(s) 610
PdiI GCCGGC 1 cut(s) 7
PdmI GAANNNNTTC 1 cut(s) 557
PkrI GCNGC 3 cut(s) 43, 46, 569
PleI GAGTC 4 cut(s) 139, 208, 263, 445
PpsI GAGTC 4 cut(s) 139, 208, 263, 445
PsiI TTATAA 1 cut(s) 362
Psp124BI GAGCTC 1 cut(s) 643
PspN4I GGNNCC 2 cut(s) 25, 250
PspXI VCTCGAGB 1 cut(s) 48
PsuI RGATCY 2 cut(s) 184, 502
RsaI GTAC 2 cut(s) 375, 430
RsaNI GTAC 2 cut(s) 374, 429
RseI CAYNNNNRTG 2 cut(s) 234, 401
SacI GAGCTC 1 cut(s) 643
SatI GCNGC 3 cut(s) 42, 45, 568
Sau3AI GATC 2 cut(s) 184, 502
SchI GAGTC 4 cut(s) 140, 209, 263, 445
ScrFI CCNGG 1 cut(s) 253
SduI GDGCHC 1 cut(s) 643
SfaNI GCATC 1 cut(s) 18
Sfr274I CTCGAG 1 cut(s) 48
SlaI CTCGAG 1 cut(s) 48
SmiMI CAYNNNNRTG 2 cut(s) 234, 401
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
Sse9I AATT 4 cut(s) 83, 210, 285, 410
SseBI AGGCCT 1 cut(s) 610
SsiI CCGC 1 cut(s) 568
SspMI CTAG 1 cut(s) 356
SstI GAGCTC 1 cut(s) 643
StuI AGGCCT 1 cut(s) 610
StyD4I CCNGG 1 cut(s) 251
StyI CCWWGG 1 cut(s) 19
TaaI ACNGT 2 cut(s) 400, 433
TaqI TCGA 5 cut(s) 49, 87, 438, 467, 561
TasI AATT 4 cut(s) 83, 210, 285, 410
TauI GCSGC 1 cut(s) 570
TseI GCWGC 2 cut(s) 41, 44
XapI RAATTY 2 cut(s) 83, 410
XhoI CTCGAG 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 557
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.