Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006269.1

Orthogroup ID

OG0003136

Physical Location & Seq

Genomic Coordinates Reverse (-)

127269 .. 128095

Gene Structure 827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006269.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atggccggcatcaaactccatggaaacgctctctcaacggcggcatcgcgagttttggctgccctctatgagaaagaggttgaattcgagcttgttccgatagacatgatagctggtgaacataaaaaggagtccttccttgcccttaatccatttggtcaagttcccgcttttgaagacggagatcttcagctctttgaatcaagagcaattacacaatacattgcccgcgagtacgcttcaaagggaaccccgctgatattcccagactcgaagaagatggcaattctatcagtgtgggcagaggtggaggctcatacgttcgacccaccagcctcaaaactgaaagatgagcttgctatgaagcctttcctaggcttggccacagacttcgcagttgtggaggaatttgaagctaagttgggtaaaattctcgatgtctatgaaactcgtctcggcgagtcgaaatacttgggaggtgattgcttcagcttggcagatcttcaccaccttccaataatacactacttgatgagaacacaagccaagaagctgttcgagtgccgtccaaatgttagtgcatgggtagctgatatcacagcaaggcctgcttggaaaaaagtcgttgccatgagagcttactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

214

Amino Acids

23.88

Weight (kDa)

5.89

Isoelectric Point (pI)

29.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02920 AT1G02930 AT1G02930 AT2G02930 AT4G02520
fragaria_vesca	FvH4_2g25210 FvH4_2g25210 FvH4_2g25210 FvH4_2g25210 FvH4_2g25210
malus_domestica	MD03G1282700.v1.1 MD03G1282900.v1.1
prunus_persica	Prupe.8G256900_v2.0.a1
pyrus_communis	pycom03g22330 pycom03g22340 pycom03g22350 pycom03g22370
rosa_chinensis	RchiOBHm_Chr6g0293321 RchiOBHm_Chr6g0293341
rosa_laevigata	RLG00000011954 RLG00000011959
rosa_multiflora	Rmu_co8438929.1_g000001 Rmu_sc0006269.1_g000031 Rmu_sc0006269.1_g000034
rosa_roxburghii	Rroxscaffold_7G00174240 Rroxscaffold_7G00174250
rosa_rugosa	Rorug06G0234500 Rorug06G0234700 Rorug06G0234800
rosa_samantha	Rh6AG347400 Rh6BG354600 Rh6BG355000 Rh6CG361200 Rh6DG347800 Rh6DG348400
rosa_wichuraiana	Rw6G030230 Rw6G030240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	49, 231
AciI	CCGC	4 cut(s)	41, 168, 229, 254
AcoI	YGGCCR	2 cut(s)	3, 381
AcsI	RAATTY	3 cut(s)	83, 407, 429
AcuI	CTGAAG	2 cut(s)	173, 472
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	2 cut(s)	374, 379
AgsI	TTSAA	5 cut(s)	83, 176, 200, 243, 413
AjuI	GAANNNNNNNTTGG	2 cut(s)	539, 571
AluBI	AGCT	9 cut(s)	91, 113, 193, 355, 416, 492, 553, 590, 638
AluI	AGCT	9 cut(s)	91, 113, 193, 355, 416, 492, 553, 590, 638
Alw26I	GTCTC	1 cut(s)	458
AoxI	GGCC	3 cut(s)	3, 381, 605
ApeKI	GCWGC	1 cut(s)	59
ApoI	RAATTY	3 cut(s)	83, 407, 429
Asp700I	GAANNNNTTC	2 cut(s)	368, 554
AspA2I	CCTAGG	1 cut(s)	373
AsuHPI	GGTGA	3 cut(s)	128, 491, 497
AvrII	CCTAGG	1 cut(s)	373
BalI	TGGCCA	1 cut(s)	383
BbsI	GAAGAC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	1 cut(s)	274
BceAI	ACGGC	2 cut(s)	54, 549
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	1 cut(s)	374
BglII	AGATCT	2 cut(s)	184, 499
BisI	GCNGC	2 cut(s)	42, 60
BlnI	CCTAGG	1 cut(s)	373
BlsI	GCNGC	2 cut(s)	43, 61
BmiI	GGNNCC	1 cut(s)	250
BmsI	GCATC	2 cut(s)	18, 53
BpiI	GAAGAC	1 cut(s)	183
BsaJI	CCNNGG	2 cut(s)	19, 373
Bsc4I	CCNNNNNNNGG	2 cut(s)	374, 379
Bse118I	RCCGGY	1 cut(s)	5
Bse3DI	GCAATG	1 cut(s)	222
BseDI	CCNNGG	2 cut(s)	19, 373
BseLI	CCNNNNNNNGG	2 cut(s)	374, 379
BseMI	GCAATG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	46
Bsh1236I	CGCG	2 cut(s)	49, 231
BshFI	GGCC	3 cut(s)	5, 383, 607
BsiSI	CCGG	1 cut(s)	6
BslI	CCNNNNNNNGG	2 cut(s)	374, 379
BsmAI	GTCTC	1 cut(s)	458
BsmBI	CGTCTC	1 cut(s)	458
BsnI	GGCC	3 cut(s)	5, 383, 607
Bsp143I	GATC	2 cut(s)	184, 499
Bsp19I	CCATGG	1 cut(s)	19
Bsp68I	TCGCGA	1 cut(s)	49
BspACI	CCGC	4 cut(s)	41, 168, 229, 254
BspANI	GGCC	3 cut(s)	5, 383, 607
BspFNI	CGCG	2 cut(s)	49, 231
BspLI	GGNNCC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	5
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	2 cut(s)	19, 373
BssMI	GATC	2 cut(s)	184, 499
BssT1I	CCWWGG	2 cut(s)	19, 373
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstC8I	GCNNGC	4 cut(s)	7, 229, 357, 609
BstDEI	CTNAG	1 cut(s)	417
BstDSI	CCRYGG	1 cut(s)	19
BstENI	CCTNNNNNAGG	1 cut(s)	372
BstFNI	CGCG	2 cut(s)	49, 231
BstKTI	GATC	2 cut(s)	187, 502
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	2 cut(s)	184, 499
BstMWI	GCNNNNNNNGC	3 cut(s)	587, 608, 635
BstUI	CGCG	2 cut(s)	49, 231
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	2 cut(s)	184, 499
BstYI	RGATCY	2 cut(s)	184, 499
BsuRI	GGCC	3 cut(s)	5, 383, 607
BtgI	CCRYGG	1 cut(s)	19
BtgZI	GCGATG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	300
BtuMI	TCGCGA	1 cut(s)	49
Cac8I	GCNNGC	4 cut(s)	7, 229, 357, 609
Cfr10I	RCCGGY	1 cut(s)	5
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	4 cut(s)	20, 106, 582, 631
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	2 cut(s)	186, 501
DpnII	GATC	2 cut(s)	184, 499
EaeI	YGGCCR	2 cut(s)	3, 381
Eco130I	CCWWGG	2 cut(s)	19, 373
Eco147I	AGGCCT	1 cut(s)	607
Eco32I	GATATC	1 cut(s)	595
Eco57I	CTGAAG	2 cut(s)	173, 472
EcoNI	CCTNNNNNAGG	1 cut(s)	372
EcoRI	GAATTC	1 cut(s)	83
EcoRV	GATATC	1 cut(s)	595
EcoT14I	CCWWGG	2 cut(s)	19, 373
ErhI	CCWWGG	2 cut(s)	19, 373
Esp3I	CGTCTC	1 cut(s)	458
FaeI	CATG	4 cut(s)	23, 109, 585, 634
FaiI	YATR	9 cut(s)	21, 69, 107, 123, 318, 362, 444, 583, 632
FalI	AAGNNNNNCTT	6 cut(s)	119, 151, 339, 371, 595, 627
FatI	CATG	4 cut(s)	19, 105, 581, 630
FauI	CCCGC	3 cut(s)	175, 236, 261
Fnu4HI	GCNGC	2 cut(s)	42, 60
Fsp4HI	GCNGC	2 cut(s)	42, 60
FspBI	CTAG	1 cut(s)	374
GluI	GCNGC	2 cut(s)	42, 60
HaeIII	GGCC	3 cut(s)	5, 383, 607
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	4 cut(s)	23, 109, 585, 634
HinfI	GANTC	4 cut(s)	131, 200, 269, 461
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	3 cut(s)	128, 491, 497
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	99
Hpy188III	TCNNGA	3 cut(s)	48, 204, 434
Hpy8I	GTNNAC	1 cut(s)	119
HpyAV	CCTTC	2 cut(s)	145, 521
HpyCH4IV	ACGT	1 cut(s)	320
HpyCH4V	TGCA	1 cut(s)	581
HpyF10VI	GCNNNNNNNGC	3 cut(s)	587, 608, 635
HpyF3I	CTNAG	1 cut(s)	417
HpySE526I	ACGT	1 cut(s)	320
Hsp92II	CATG	4 cut(s)	23, 109, 585, 634
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	184, 499
LpnPI	CCDG	5 cut(s)	19, 99, 279, 345, 621
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	2 cut(s)	18, 53
MaeI	CTAG	1 cut(s)	374
MaeII	ACGT	1 cut(s)	320
MalI	GATC	2 cut(s)	186, 501
MboI	GATC	2 cut(s)	184, 499
MboII	GAAGA	5 cut(s)	179, 188, 286, 289, 494
MflI	RGATCY	2 cut(s)	184, 499
MlsI	TGGCCA	1 cut(s)	383
MluCI	AATT	5 cut(s)	83, 210, 285, 407, 429
MluNI	TGGCCA	1 cut(s)	383
MlyI	GAGTC	3 cut(s)	140, 263, 470
MnlI	CCTC	7 cut(s)	70, 74, 298, 304, 346, 397, 470
Mox20I	TGGCCA	1 cut(s)	383
MroNI	GCCGGC	1 cut(s)	5
MroXI	GAANNNNTTC	2 cut(s)	368, 554
MscI	TGGCCA	1 cut(s)	383
MseI	TTAA	1 cut(s)	147
Msp20I	TGGCCA	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	256
MspI	CCGG	1 cut(s)	6
MvnI	CGCG	2 cut(s)	49, 231
MwoI	GCNNNNNNNGC	3 cut(s)	587, 608, 635
NaeI	GCCGGC	1 cut(s)	7
NcoI	CCATGG	1 cut(s)	19
NdeII	GATC	2 cut(s)	184, 499
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	4 cut(s)	23, 109, 585, 634
NlaIV	GGNNCC	1 cut(s)	250
NmeAIII	GCCGAG	1 cut(s)	435
NruI	TCGCGA	1 cut(s)	49
PceI	AGGCCT	1 cut(s)	607
PdiI	GCCGGC	1 cut(s)	7
PdmI	GAANNNNTTC	2 cut(s)	368, 554
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	2 cut(s)	43, 61
PleI	GAGTC	3 cut(s)	139, 263, 469
PpsI	GAGTC	3 cut(s)	139, 263, 469
PspN4I	GGNNCC	1 cut(s)	250
PsuI	RGATCY	2 cut(s)	184, 499
RruI	TCGCGA	1 cut(s)	49
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	2 cut(s)	42, 60
Sau3AI	GATC	2 cut(s)	184, 499
SchI	GAGTC	3 cut(s)	140, 263, 470
SfaNI	GCATC	2 cut(s)	18, 53
Sse9I	AATT	5 cut(s)	83, 210, 285, 407, 429
SseBI	AGGCCT	1 cut(s)	607
SsiI	CCGC	4 cut(s)	41, 168, 229, 254
SspMI	CTAG	1 cut(s)	374
StuI	AGGCCT	1 cut(s)	607
StyI	CCWWGG	2 cut(s)	19, 373
TaiI	ACGT	1 cut(s)	323
TaqI	TCGA	6 cut(s)	87, 272, 324, 435, 464, 558
TasI	AATT	5 cut(s)	83, 210, 285, 407, 429
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	1 cut(s)	300
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	2 cut(s)	377, 459
TspGWI	ACGGA	1 cut(s)	195
TspRI	CASTG	1 cut(s)	300
XagI	CCTNNNNNAGG	1 cut(s)	372
XapI	RAATTY	3 cut(s)	83, 407, 429
XmaJI	CCTAGG	1 cut(s)	373
XmnI	GAANNNNTTC	2 cut(s)	368, 554
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.