Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8438929.1

Orthogroup ID

OG0003136

Physical Location & Seq

Genomic Coordinates Reverse (-)

694 .. 1519

Gene Structure 826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8438929.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atggccggcatcaaagtccatggaacccctttctcaacggcagcagctcgagttttggctaccctctatgagaaagaagttgaattcgagtttgttccgatagacatgagagctggtgaacataaaaaggagtccttccttgccctcaatccatttggtcaagttccagcttttgaagacggagatcttcagctctttgagtcgagagcaattacacaatacattgcccatgagtatgctccaaagggaaccccgctgattttcccagactcaaagaagatggcaattctatcagtgtggacagaggtggaggctcaaaaatacgacccagtagcttcaaaactgacatttgagctagctataaaacctctgatgcttggcttggccacagacttcacagtcgtggaggaatttgaagctaagttgggtacagttctcgatgtctatgaggctcgtctgggcaaatcgaaatacttgggaggtgattgcttcagcttggcagatcttcaccaccttccaaccacagactacttgatgggaacacaagtcaagaagctgttcgagtgccgcccaaatgttagcgcatgggtagctgatatcacagcaaggcctgcttggaaaaaagtcgttgccatgagagctcactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

215

Amino Acids

23.96

Weight (kDa)

5.89

Isoelectric Point (pI)

24.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02920 AT1G02930 AT1G02930 AT2G02930 AT4G02520
fragaria_vesca	FvH4_2g25210 FvH4_2g25210 FvH4_2g25210 FvH4_2g25210 FvH4_2g25210
malus_domestica	MD03G1282700.v1.1 MD03G1282900.v1.1
prunus_persica	Prupe.8G256900_v2.0.a1
pyrus_communis	pycom03g22330 pycom03g22340 pycom03g22350 pycom03g22370
rosa_chinensis	RchiOBHm_Chr6g0293321 RchiOBHm_Chr6g0293341
rosa_laevigata	RLG00000011954 RLG00000011959
rosa_multiflora	Rmu_co8438929.1_g000001 Rmu_sc0006269.1_g000031 Rmu_sc0006269.1_g000034
rosa_roxburghii	Rroxscaffold_7G00174240 Rroxscaffold_7G00174250
rosa_rugosa	Rorug06G0234500 Rorug06G0234700 Rorug06G0234800
rosa_samantha	Rh6AG347400 Rh6BG354600 Rh6BG355000 Rh6CG361200 Rh6DG347800 Rh6DG348400
rosa_wichuraiana	Rw6G030230 Rw6G030240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	398
AciI	CCGC	2 cut(s)	254, 568
AcoI	YGGCCR	2 cut(s)	3, 384
AcsI	RAATTY	2 cut(s)	83, 410
AcuI	CTGAAG	2 cut(s)	173, 475
AfaI	GTAC	1 cut(s)	430
AgsI	TTSAA	4 cut(s)	83, 176, 339, 416
AleI	CACNNNNGTG	1 cut(s)	401
Alw21I	GWGCWC	1 cut(s)	643
Ama87I	CYCGRG	1 cut(s)	48
AoxI	GGCC	3 cut(s)	3, 384, 608
ApeKI	GCWGC	2 cut(s)	41, 44
ApoI	RAATTY	2 cut(s)	83, 410
Asp700I	GAANNNNTTC	1 cut(s)	557
AspLEI	GCGC	1 cut(s)	584
AsuHPI	GGTGA	3 cut(s)	128, 494, 500
AsuNHI	GCTAGC	1 cut(s)	355
AvaI	CYCGRG	1 cut(s)	48
BalI	TGGCCA	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	643
BbsI	GAAGAC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	643
BbvI	GCAGC	2 cut(s)	53, 56
BccI	CCATC	2 cut(s)	274, 529
BceAI	ACGGC	1 cut(s)	54
BfaI	CTAG	1 cut(s)	356
BglII	AGATCT	2 cut(s)	184, 502
BisI	GCNGC	3 cut(s)	42, 45, 568
BlsI	GCNGC	3 cut(s)	43, 46, 569
BmeT110I	CYCGRG	1 cut(s)	48
BmiI	GGNNCC	2 cut(s)	25, 250
BmrI	ACTGGG	1 cut(s)	323
BmsI	GCATC	2 cut(s)	18, 363
BmtI	GCTAGC	1 cut(s)	359
BmuI	ACTGGG	1 cut(s)	323
BpiI	GAAGAC	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	19
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	329
Bse3DI	GCAATG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	19
BseMI	GCAATG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	329
BseXI	GCAGC	2 cut(s)	53, 56
BshFI	GGCC	3 cut(s)	5, 386, 610
BsiHKAI	GWGCWC	1 cut(s)	643
BsiHKCI	CYCGRG	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	6
BsnI	GGCC	3 cut(s)	5, 386, 610
BsoBI	CYCGRG	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	643
Bsp143I	GATC	2 cut(s)	184, 502
Bsp19I	CCATGG	1 cut(s)	19
BspACI	CCGC	2 cut(s)	254, 568
BspANI	GGCC	3 cut(s)	5, 386, 610
BspLI	GGNNCC	2 cut(s)	25, 250
BspOI	GCTAGC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	329
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	2 cut(s)	184, 502
BssT1I	CCWWGG	1 cut(s)	19
Bst4CI	ACNGT	2 cut(s)	400, 433
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstC8I	GCNNGC	3 cut(s)	7, 357, 612
BstDEI	CTNAG	1 cut(s)	420
BstDSI	CCRYGG	1 cut(s)	19
BstHHI	GCGC	1 cut(s)	584
BstKTI	GATC	2 cut(s)	187, 505
BstMBI	GATC	2 cut(s)	184, 502
BstMWI	GCNNNNNNNGC	3 cut(s)	590, 611, 638
BstV1I	GCAGC	2 cut(s)	53, 56
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	2 cut(s)	184, 502
BstYI	RGATCY	2 cut(s)	184, 502
BsuRI	GGCC	3 cut(s)	5, 386, 610
BtgI	CCRYGG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	3 cut(s)	7, 357, 612
CfoI	GCGC	1 cut(s)	584
Cfr10I	RCCGGY	1 cut(s)	5
Csp6I	GTAC	1 cut(s)	429
CviAII	CATG	5 cut(s)	20, 106, 230, 585, 634
CviQI	GTAC	1 cut(s)	429
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	2 cut(s)	186, 504
DpnII	GATC	2 cut(s)	184, 502
DrdI	GACNNNNNNGTC	1 cut(s)	398
DseDI	GACNNNNNNGTC	1 cut(s)	398
EaeI	YGGCCR	2 cut(s)	3, 384
Ecl136II	GAGCTC	1 cut(s)	641
Eco130I	CCWWGG	1 cut(s)	19
Eco147I	AGGCCT	1 cut(s)	610
Eco24I	GRGCYC	1 cut(s)	643
Eco32I	GATATC	1 cut(s)	598
Eco53kI	GAGCTC	1 cut(s)	641
Eco57I	CTGAAG	2 cut(s)	173, 475
Eco88I	CYCGRG	1 cut(s)	48
EcoICRI	GAGCTC	1 cut(s)	641
EcoRI	GAATTC	1 cut(s)	83
EcoRV	GATATC	1 cut(s)	598
EcoT14I	CCWWGG	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	643
ErhI	CCWWGG	1 cut(s)	19
FaeI	CATG	5 cut(s)	23, 109, 233, 588, 637
FalI	AAGNNNNNCTT	4 cut(s)	119, 151, 598, 630
FatI	CATG	5 cut(s)	19, 105, 229, 584, 633
FauI	CCCGC	1 cut(s)	261
Fnu4HI	GCNGC	3 cut(s)	42, 45, 568
FriOI	GRGCYC	1 cut(s)	643
Fsp4HI	GCNGC	3 cut(s)	42, 45, 568
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	1 cut(s)	583
GluI	GCNGC	3 cut(s)	42, 45, 568
HaeIII	GGCC	3 cut(s)	5, 386, 610
HapII	CCGG	1 cut(s)	6
HhaI	GCGC	1 cut(s)	584
Hin1II	CATG	5 cut(s)	23, 109, 233, 588, 637
Hin6I	GCGC	1 cut(s)	582
HinP1I	GCGC	1 cut(s)	582
HinfI	GANTC	3 cut(s)	131, 200, 269
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	3 cut(s)	128, 494, 500
Hpy166II	GTNNAC	2 cut(s)	119, 300
Hpy188I	TCNGA	2 cut(s)	99, 372
Hpy188III	TCNNGA	3 cut(s)	204, 437, 550
Hpy8I	GTNNAC	2 cut(s)	119, 300
HpyAV	CCTTC	2 cut(s)	145, 524
HpyCH4III	ACNGT	2 cut(s)	400, 433
HpyF10VI	GCNNNNNNNGC	3 cut(s)	590, 611, 638
HpyF3I	CTNAG	1 cut(s)	420
Hsp92II	CATG	5 cut(s)	23, 109, 233, 588, 637
HspAI	GCGC	1 cut(s)	582
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	184, 502
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	7 cut(s)	19, 99, 180, 279, 342, 443, 624
Lsp1109I	GCAGC	2 cut(s)	53, 56
LweI	GCATC	2 cut(s)	18, 363
MaeI	CTAG	1 cut(s)	356
MalI	GATC	2 cut(s)	186, 504
MboI	GATC	2 cut(s)	184, 502
MboII	GAAGA	4 cut(s)	179, 188, 289, 497
MflI	RGATCY	2 cut(s)	184, 502
MhlI	GDGCHC	1 cut(s)	643
MlsI	TGGCCA	1 cut(s)	386
MluCI	AATT	4 cut(s)	83, 210, 285, 410
MluNI	TGGCCA	1 cut(s)	386
MlyI	GAGTC	3 cut(s)	140, 209, 263
MmeI	TCCRAC	1 cut(s)	542
MnlI	CCTC	8 cut(s)	74, 155, 298, 304, 378, 400, 442, 473
Mox20I	TGGCCA	1 cut(s)	386
MroNI	GCCGGC	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	557
MscI	TGGCCA	1 cut(s)	386
MslI	CAYNNNNRTG	2 cut(s)	234, 401
Msp20I	TGGCCA	1 cut(s)	386
MspA1I	CMGCKG	1 cut(s)	256
MspI	CCGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	3 cut(s)	590, 611, 638
NaeI	GCCGGC	1 cut(s)	7
NcoI	CCATGG	1 cut(s)	19
NdeII	GATC	2 cut(s)	184, 502
NgoMIV	GCCGGC	1 cut(s)	5
NheI	GCTAGC	1 cut(s)	355
NlaIII	CATG	5 cut(s)	23, 109, 233, 588, 637
NlaIV	GGNNCC	2 cut(s)	25, 250
OliI	CACNNNNGTG	1 cut(s)	401
PaeR7I	CTCGAG	1 cut(s)	48
PceI	AGGCCT	1 cut(s)	610
PdiI	GCCGGC	1 cut(s)	7
PdmI	GAANNNNTTC	1 cut(s)	557
PkrI	GCNGC	3 cut(s)	43, 46, 569
PleI	GAGTC	3 cut(s)	139, 208, 263
PpsI	GAGTC	3 cut(s)	139, 208, 263
Psp124BI	GAGCTC	1 cut(s)	643
PspN4I	GGNNCC	2 cut(s)	25, 250
PspXI	VCTCGAGB	1 cut(s)	48
PsuI	RGATCY	2 cut(s)	184, 502
RsaI	GTAC	1 cut(s)	430
RsaNI	GTAC	1 cut(s)	429
RseI	CAYNNNNRTG	2 cut(s)	234, 401
SacI	GAGCTC	1 cut(s)	643
SatI	GCNGC	3 cut(s)	42, 45, 568
Sau3AI	GATC	2 cut(s)	184, 502
SchI	GAGTC	3 cut(s)	140, 209, 263
SduI	GDGCHC	1 cut(s)	643
SfaNI	GCATC	2 cut(s)	18, 363
Sfr274I	CTCGAG	1 cut(s)	48
SlaI	CTCGAG	1 cut(s)	48
SmiMI	CAYNNNNRTG	2 cut(s)	234, 401
SmlI	CTYRAG	1 cut(s)	48
SmoI	CTYRAG	1 cut(s)	48
Sse9I	AATT	4 cut(s)	83, 210, 285, 410
SseBI	AGGCCT	1 cut(s)	610
SsiI	CCGC	2 cut(s)	254, 568
SspMI	CTAG	1 cut(s)	356
SstI	GAGCTC	1 cut(s)	643
StuI	AGGCCT	1 cut(s)	610
StyI	CCWWGG	1 cut(s)	19
TaaI	ACNGT	2 cut(s)	400, 433
TaqI	TCGA	6 cut(s)	49, 87, 203, 438, 467, 561
TasI	AATT	4 cut(s)	83, 210, 285, 410
TauI	GCSGC	1 cut(s)	570
TscAI	CASTG	1 cut(s)	300
TseI	GCWGC	2 cut(s)	41, 44
TspGWI	ACGGA	1 cut(s)	195
TspRI	CASTG	1 cut(s)	300
XapI	RAATTY	2 cut(s)	83, 410
XhoI	CTCGAG	1 cut(s)	48
XmnI	GAANNNNTTC	1 cut(s)	557
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.