Rroxscaffold_7G00174250
ERF Family

Belongs to the GST superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003136
Physical Location & Seq
Reverse (-)
13976290 .. 13977196
907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00174250.1

Sequence Viewer

Length: 648 bp
ATGGCCGGCATCAAAGTCCATGGAACCCCTTTCTCAACGGCAGCAGCTCGAGTTTTGGCTACCCTCTATGAGAAAGAGGTTGAATTCGAGTTTGTTCCGATAGACATGAAAGCTGGTGAACATAAAAAGGAGTCCTTCCTTGCCCTCAATCCATTTGGTCAAGTTCCAGCTTTTGAAGACGGAGATCTTCAGCTCTTTGAGTCAAGAGCAATTACACAATACATCGCCCATGAGTATGCTCCAAAGGGAACCCCGCTGATTTTCCCAGACTCAAAGAAGATGGCAATTCTATCAGTGTGGACAGAGGTGGAGGCTCAGAAATACGACCCAGTAGCTTCAAAACTGACATTTGAGCTAGTCATAAAACCTCTGATCCTTGGCTTGGCCACAGACTTCACAGTCGTGGAGGAATTTGAATCTAAGTTGGGTACAGTTCTCGATGTCTATGAGGCTCGTCTGGGCAAATCGAAATACTTGGGAGGTGATTGCTTCAGCTTGGCAGATCTTCACCACCTTCCAACCACAGACTACTTGATGGGAACACAAGCCAAGAAGCTGTTCGAGTGCCGCCCAAATGTTAGCGCATGGGTAGCTGATATCACAGCAAGGTCTGCTTGGAAAAAAGTCGTTGCCATGAGAGCTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418
Pfam Domains
Protein Families
GST_C GST_N

Protein Analysis

215

Amino Acids

23.92

Weight (kDa)

5.89

Isoelectric Point (pI)

27.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 4 - 76 2e-21 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 7 - 81 1.4e-14 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 11 - 77 3.9e-12 Glutathione S-transferase, N-terminal domain
GST_C PF00043 114 - 203 1e-12 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 398
AciI CCGC 2 cut(s) 254, 568
AclWI GGATC 1 cut(s) 367
AcoI YGGCCR 2 cut(s) 3, 384
AcsI RAATTY 2 cut(s) 83, 410
AcuI CTGAAG 2 cut(s) 173, 475
AfaI GTAC 1 cut(s) 430
AfiI CCNNNNNNNGG 1 cut(s) 382
AgsI TTSAA 4 cut(s) 83, 176, 339, 416
AjuI GAANNNNNNNTTGG 2 cut(s) 542, 574
AleI CACNNNNGTG 1 cut(s) 401
Alw21I GWGCWC 1 cut(s) 643
AlwI GGATC 1 cut(s) 367
Ama87I CYCGRG 1 cut(s) 48
AoxI GGCC 2 cut(s) 3, 384
ApeKI GCWGC 2 cut(s) 41, 44
ApoI RAATTY 2 cut(s) 83, 410
Asp700I GAANNNNTTC 1 cut(s) 557
AspLEI GCGC 1 cut(s) 584
AsuHPI GGTGA 3 cut(s) 128, 494, 500
AvaI CYCGRG 1 cut(s) 48
BalI TGGCCA 1 cut(s) 386
BanII GRGCYC 1 cut(s) 643
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 643
BbvI GCAGC 2 cut(s) 53, 56
BccI CCATC 2 cut(s) 274, 529
BceAI ACGGC 1 cut(s) 54
BfaI CTAG 1 cut(s) 356
BglII AGATCT 2 cut(s) 184, 502
BisI GCNGC 3 cut(s) 42, 45, 568
BlsI GCNGC 3 cut(s) 43, 46, 569
BmeT110I CYCGRG 1 cut(s) 48
BmiI GGNNCC 2 cut(s) 25, 250
BmrI ACTGGG 1 cut(s) 323
BmsI GCATC 1 cut(s) 18
BmuI ACTGGG 1 cut(s) 323
BpiI GAAGAC 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 19, 376
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 329
BseDI CCNNGG 2 cut(s) 19, 376
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMII CTCAG 1 cut(s) 329
BseNI ACTGG 1 cut(s) 329
BseXI GCAGC 2 cut(s) 53, 56
BshFI GGCC 2 cut(s) 5, 386
BsiHKAI GWGCWC 1 cut(s) 643
BsiHKCI CYCGRG 1 cut(s) 48
BsiSI CCGG 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 382
BsnI GGCC 2 cut(s) 5, 386
BsoBI CYCGRG 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 643
Bsp143I GATC 3 cut(s) 184, 372, 502
Bsp19I CCATGG 1 cut(s) 19
BspACI CCGC 2 cut(s) 254, 568
BspANI GGCC 2 cut(s) 5, 386
BspCNI CTCAG 1 cut(s) 328
BspLI GGNNCC 2 cut(s) 25, 250
BspPI GGATC 1 cut(s) 367
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 1 cut(s) 329
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 2 cut(s) 19, 376
BssMI GATC 3 cut(s) 184, 372, 502
BssT1I CCWWGG 2 cut(s) 19, 376
Bst4CI ACNGT 2 cut(s) 400, 433
BstAPI GCANNNNNTGC 1 cut(s) 611
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 2 cut(s) 315, 420
BstDSI CCRYGG 1 cut(s) 19
BstHHI GCGC 1 cut(s) 584
BstKTI GATC 3 cut(s) 187, 375, 505
BstMBI GATC 3 cut(s) 184, 372, 502
BstMWI GCNNNNNNNGC 3 cut(s) 590, 611, 638
BstV1I GCAGC 2 cut(s) 53, 56
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 2 cut(s) 184, 502
BstYI RGATCY 2 cut(s) 184, 502
BsuRI GGCC 2 cut(s) 5, 386
BtgI CCRYGG 1 cut(s) 19
BtgZI GCGATG 1 cut(s) 208
BtsIMutI CAGTG 1 cut(s) 300
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 584
Cfr10I RCCGGY 1 cut(s) 5
Csp6I GTAC 1 cut(s) 429
CviAII CATG 5 cut(s) 20, 106, 230, 585, 634
CviQI GTAC 1 cut(s) 429
DdeI CTNAG 2 cut(s) 315, 420
DpnI GATC 3 cut(s) 186, 374, 504
DpnII GATC 3 cut(s) 184, 372, 502
DrdI GACNNNNNNGTC 1 cut(s) 398
DseDI GACNNNNNNGTC 1 cut(s) 398
EaeI YGGCCR 2 cut(s) 3, 384
Ecl136II GAGCTC 1 cut(s) 641
Eco130I CCWWGG 2 cut(s) 19, 376
Eco24I GRGCYC 1 cut(s) 643
Eco32I GATATC 1 cut(s) 598
Eco53kI GAGCTC 1 cut(s) 641
Eco57I CTGAAG 2 cut(s) 173, 475
Eco88I CYCGRG 1 cut(s) 48
EcoICRI GAGCTC 1 cut(s) 641
EcoRI GAATTC 1 cut(s) 83
EcoRV GATATC 1 cut(s) 598
EcoT14I CCWWGG 2 cut(s) 19, 376
EcoT38I GRGCYC 1 cut(s) 643
ErhI CCWWGG 2 cut(s) 19, 376
FaeI CATG 5 cut(s) 23, 109, 233, 588, 637
FalI AAGNNNNNCTT 4 cut(s) 119, 151, 598, 630
FatI CATG 5 cut(s) 19, 105, 229, 584, 633
FauI CCCGC 1 cut(s) 261
Fnu4HI GCNGC 3 cut(s) 42, 45, 568
FriOI GRGCYC 1 cut(s) 643
Fsp4HI GCNGC 3 cut(s) 42, 45, 568
FspBI CTAG 1 cut(s) 356
GlaI GCGC 1 cut(s) 583
GluI GCNGC 3 cut(s) 42, 45, 568
HaeIII GGCC 2 cut(s) 5, 386
HapII CCGG 1 cut(s) 6
HhaI GCGC 1 cut(s) 584
Hin1II CATG 5 cut(s) 23, 109, 233, 588, 637
Hin6I GCGC 1 cut(s) 582
HinP1I GCGC 1 cut(s) 582
HinfI GANTC 4 cut(s) 131, 200, 269, 416
HpaII CCGG 1 cut(s) 6
HphI GGTGA 3 cut(s) 128, 494, 500
Hpy166II GTNNAC 2 cut(s) 119, 300
Hpy188I TCNGA 3 cut(s) 99, 318, 372
Hpy188III TCNNGA 2 cut(s) 204, 437
Hpy8I GTNNAC 2 cut(s) 119, 300
HpyAV CCTTC 2 cut(s) 145, 524
HpyCH4III ACNGT 2 cut(s) 400, 433
HpyF10VI GCNNNNNNNGC 3 cut(s) 590, 611, 638
HpyF3I CTNAG 2 cut(s) 315, 420
Hsp92II CATG 5 cut(s) 23, 109, 233, 588, 637
HspAI GCGC 1 cut(s) 582
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Kzo9I GATC 3 cut(s) 184, 372, 502
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 6 cut(s) 19, 99, 180, 279, 342, 443
Lsp1109I GCAGC 2 cut(s) 53, 56
LweI GCATC 1 cut(s) 18
MaeI CTAG 1 cut(s) 356
MalI GATC 3 cut(s) 186, 374, 504
MboI GATC 3 cut(s) 184, 372, 502
MboII GAAGA 4 cut(s) 179, 188, 289, 497
MflI RGATCY 2 cut(s) 184, 502
MhlI GDGCHC 1 cut(s) 643
MlsI TGGCCA 1 cut(s) 386
MluCI AATT 4 cut(s) 83, 210, 285, 410
MluNI TGGCCA 1 cut(s) 386
MlyI GAGTC 3 cut(s) 140, 209, 263
MmeI TCCRAC 1 cut(s) 542
MnlI CCTC 9 cut(s) 70, 74, 155, 298, 304, 378, 400, 442, 473
Mox20I TGGCCA 1 cut(s) 386
MroNI GCCGGC 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 557
MscI TGGCCA 1 cut(s) 386
MslI CAYNNNNRTG 2 cut(s) 234, 401
Msp20I TGGCCA 1 cut(s) 386
MspA1I CMGCKG 1 cut(s) 256
MspI CCGG 1 cut(s) 6
MwoI GCNNNNNNNGC 3 cut(s) 590, 611, 638
NaeI GCCGGC 1 cut(s) 7
NcoI CCATGG 1 cut(s) 19
NdeII GATC 3 cut(s) 184, 372, 502
NgoMIV GCCGGC 1 cut(s) 5
NlaIII CATG 5 cut(s) 23, 109, 233, 588, 637
NlaIV GGNNCC 2 cut(s) 25, 250
OliI CACNNNNGTG 1 cut(s) 401
PaeR7I CTCGAG 1 cut(s) 48
PdiI GCCGGC 1 cut(s) 7
PdmI GAANNNNTTC 1 cut(s) 557
PfeI GAWTC 1 cut(s) 416
PkrI GCNGC 3 cut(s) 43, 46, 569
PleI GAGTC 3 cut(s) 139, 208, 263
PpsI GAGTC 3 cut(s) 139, 208, 263
Psp124BI GAGCTC 1 cut(s) 643
PspN4I GGNNCC 2 cut(s) 25, 250
PspXI VCTCGAGB 1 cut(s) 48
PsuI RGATCY 2 cut(s) 184, 502
RsaI GTAC 1 cut(s) 430
RsaNI GTAC 1 cut(s) 429
RseI CAYNNNNRTG 2 cut(s) 234, 401
SacI GAGCTC 1 cut(s) 643
SatI GCNGC 3 cut(s) 42, 45, 568
Sau3AI GATC 3 cut(s) 184, 372, 502
SchI GAGTC 3 cut(s) 140, 209, 263
SduI GDGCHC 1 cut(s) 643
SfaNI GCATC 1 cut(s) 18
Sfr274I CTCGAG 1 cut(s) 48
SlaI CTCGAG 1 cut(s) 48
SmiMI CAYNNNNRTG 2 cut(s) 234, 401
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
Sse9I AATT 4 cut(s) 83, 210, 285, 410
SsiI CCGC 2 cut(s) 254, 568
SspMI CTAG 1 cut(s) 356
SstI GAGCTC 1 cut(s) 643
StyI CCWWGG 2 cut(s) 19, 376
TaaI ACNGT 2 cut(s) 400, 433
TaqI TCGA 5 cut(s) 49, 87, 438, 467, 561
TasI AATT 4 cut(s) 83, 210, 285, 410
TauI GCSGC 1 cut(s) 570
TfiI GAWTC 1 cut(s) 416
TscAI CASTG 1 cut(s) 300
TseI GCWGC 2 cut(s) 41, 44
TspDTI ATGAA 1 cut(s) 122
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 1 cut(s) 300
XapI RAATTY 2 cut(s) 83, 410
XhoI CTCGAG 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 557
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.