Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003136

Physical Location & Seq

Genomic Coordinates Reverse (-)

22495188 .. 22496419

Gene Structure 1232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g22350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTGCTTGCACCACAAGCTACATTTTCAGAAGCAGTTGCACATCTGTTTCTCAGTTGCTCAAACTTCTTACTTTTTCACTTCCTCCAGAGTCATGGCTGCCATCAAGGTCCACGGAATCGTTATCTCAACCGCTTCAATGCGAGTTTTTGCTACTCTCTACGAGAAAGACATCGAATTCGAGCTTGTTCCAATCGACTTGGGTGCTGGTGAACACAAAAAGGAGCCCTTCATTTCCCTCAATGCGGCCATTTGGTCAAGTTCCAGCTTTCGAAGACGGATCGATCTTAAGCTCTTTGAATCAAGGGCAATTACACGATACATTGCCCACGAGTATGCTGACAAGGGAACCCCGCTGGTGATCCGAGACACTAAGAAGATGGCAATTATATCATTGGGGTGTGAGGTGGAGGGCCAAAAGTTCGACCCGGCGGCCTCAAAACTGATCTTTGAGCTAGTTAAAAAGCCTATGCTTAAAATGACCACAGATGCGGCAGTTGTGGAGGAATATGAAGCCAAGTTGGCTGTGGTTCTGGATGTATATGAGATTCGTCTGGCTCAGTCGAAGTACTTGGCAGGCGAAAGCTTCACTTTGGCTGATCTTCACCACCTTCCCACCATACATTACTTGATGGGAACTCGATCGAAGAAGCTGTTCAAGTCCCGCCCCCATGTTAGCGCATGGGTAGTGGATATCACAGCAAGGCCAGCTTGGAACAAAGTCATTGCCCTGCAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

247

Amino Acids

27.94

Weight (kDa)

9.38

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	35 - 109	2.2e-09	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	148 - 236	2.6e-15	Glutathione S-transferase, C-terminal domain
GST_C_3	PF14497	169 - 237	2.2e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02920 AT1G02930 AT1G02930 AT2G02930 AT4G02520
fragaria_vesca	FvH4_2g25210 FvH4_2g25210 FvH4_2g25210 FvH4_2g25210 FvH4_2g25210
malus_domestica	MD03G1282700.v1.1 MD03G1282900.v1.1
prunus_persica	Prupe.8G256900_v2.0.a1
pyrus_communis	pycom03g22330 pycom03g22340 pycom03g22350 pycom03g22370
rosa_chinensis	RchiOBHm_Chr6g0293321 RchiOBHm_Chr6g0293341
rosa_laevigata	RLG00000011954 RLG00000011959
rosa_multiflora	Rmu_co8438929.1_g000001 Rmu_sc0006269.1_g000031 Rmu_sc0006269.1_g000034
rosa_roxburghii	Rroxscaffold_7G00174240 Rroxscaffold_7G00174250
rosa_rugosa	Rorug06G0234500 Rorug06G0234700 Rorug06G0234800
rosa_samantha	Rh6AG347400 Rh6BG354600 Rh6BG355000 Rh6CG361200 Rh6DG347800 Rh6DG348400
rosa_wichuraiana	Rw6G030230 Rw6G030240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	132, 245, 353, 431, 491, 664
AclWI	GGATC	2 cut(s)	287, 355
AcoI	YGGCCR	1 cut(s)	246
AcsI	RAATTY	1 cut(s)	176
AfaI	GTAC	1 cut(s)	569
AfiI	CCNNNNNNNGG	1 cut(s)	244
AflII	CTTAAG	1 cut(s)	287
AgsI	TTSAA	3 cut(s)	138, 299, 658
AluBI	AGCT	8 cut(s)	19, 184, 267, 292, 454, 585, 652, 710
AluI	AGCT	8 cut(s)	19, 184, 267, 292, 454, 585, 652, 710
Alw26I	GTCTC	1 cut(s)	360
AlwI	GGATC	2 cut(s)	287, 355
AoxI	GGCC	4 cut(s)	246, 412, 432, 704
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	176
ArsI	GACNNNNNNTTYG	2 cut(s)	161, 193
Asp700I	GAANNNNTTC	1 cut(s)	653
AspLEI	GCGC	1 cut(s)	680
AspS9I	GGNCC	2 cut(s)	109, 412
AsuC2I	CCSGG	1 cut(s)	428
AsuHPI	GGTGA	3 cut(s)	221, 370, 596
AsuII	TTCGAA	1 cut(s)	271
AvaII	GGWCC	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	228
BauI	CACGAG	1 cut(s)	329
BbsI	GAAGAC	1 cut(s)	280
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	3 cut(s)	110, 373, 625
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BcnI	CCSGG	1 cut(s)	428
BcoDI	GTCTC	1 cut(s)	360
BfaI	CTAG	1 cut(s)	455
BfrI	CTTAAG	1 cut(s)	287
BglI	GCCNNNNNGGC	1 cut(s)	521
BisI	GCNGC	4 cut(s)	99, 246, 432, 492
BlsI	GCNGC	4 cut(s)	100, 247, 433, 493
BmcAI	AGTACT	1 cut(s)	569
Bme1390I	CCNGG	1 cut(s)	428
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	2 cut(s)	109, 412
BmiI	GGNNCC	2 cut(s)	225, 349
BmrFI	CCNGG	1 cut(s)	428
BmsI	GCATC	1 cut(s)	478
BpiI	GAAGAC	1 cut(s)	280
BpmI	CTGGAG	1 cut(s)	70
Bpu14I	TTCGAA	1 cut(s)	271
BpuMI	CCSGG	1 cut(s)	428
Bsa29I	ATCGAT	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse3DI	GCAATG	2 cut(s)	321, 723
BseCI	ATCGAT	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	112
BseGI	GGATG	1 cut(s)	541
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMI	GCAATG	2 cut(s)	321, 723
BseMII	CTCAG	2 cut(s)	66, 572
BseXI	GCAGC	1 cut(s)	85
Bsh1285I	CGRYCG	1 cut(s)	644
BshFI	GGCC	4 cut(s)	248, 414, 434, 706
BshVI	ATCGAT	1 cut(s)	282
BsiEI	CGRYCG	1 cut(s)	644
BsiSI	CCGG	1 cut(s)	428
BslFI	GGGAC	1 cut(s)	646
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	360
BsmFI	GGGAC	1 cut(s)	646
BsnI	GGCC	4 cut(s)	248, 414, 434, 706
Bsp119I	TTCGAA	1 cut(s)	271
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	6 cut(s)	279, 283, 360, 444, 598, 641
BspACI	CCGC	6 cut(s)	132, 245, 353, 431, 491, 664
BspANI	GGCC	4 cut(s)	248, 414, 434, 706
BspCNI	CTCAG	2 cut(s)	65, 571
BspDI	ATCGAT	1 cut(s)	282
BspLI	GGNNCC	2 cut(s)	225, 349
BspPI	GGATC	2 cut(s)	287, 355
BspT104I	TTCGAA	1 cut(s)	271
BspTI	CTTAAG	1 cut(s)	287
BsrDI	GCAATG	2 cut(s)	321, 723
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	6 cut(s)	279, 283, 360, 444, 598, 641
BssSI	CACGAG	1 cut(s)	329
Bst2BI	CACGAG	1 cut(s)	329
BstAFI	CTTAAG	1 cut(s)	287
BstBI	TTCGAA	1 cut(s)	271
BstC8I	GCNNGC	3 cut(s)	8, 577, 708
BstDEI	CTNAG	3 cut(s)	52, 372, 558
BstDSI	CCRYGG	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	541
BstHHI	GCGC	1 cut(s)	680
BstKTI	GATC	6 cut(s)	282, 286, 363, 447, 601, 644
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	6 cut(s)	279, 283, 360, 444, 598, 641
BstMCI	CGRYCG	1 cut(s)	644
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 521, 707
BstSCI	CCNGG	1 cut(s)	426
BstV1I	GCAGC	1 cut(s)	85
BstV2I	GAAGAC	1 cut(s)	280
BstXI	CCANNNNNNTGG	1 cut(s)	94
Bsu15I	ATCGAT	1 cut(s)	282
BsuRI	GGCC	4 cut(s)	248, 414, 434, 706
BsuTUI	ATCGAT	1 cut(s)	282
BtgI	CCRYGG	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	541
Cac8I	GCNNGC	3 cut(s)	8, 577, 708
CfoI	GCGC	1 cut(s)	680
Cfr13I	GGNCC	2 cut(s)	109, 412
ClaI	ATCGAT	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	568
CviAII	CATG	3 cut(s)	94, 671, 681
CviQI	GTAC	1 cut(s)	568
DdeI	CTNAG	3 cut(s)	52, 372, 558
DpnI	GATC	6 cut(s)	281, 285, 362, 446, 600, 643
DpnII	GATC	6 cut(s)	279, 283, 360, 444, 598, 641
EaeI	YGGCCR	1 cut(s)	246
Eco24I	GRGCYC	1 cut(s)	228
Eco32I	GATATC	1 cut(s)	694
Eco47I	GGWCC	1 cut(s)	109
EcoRI	GAATTC	1 cut(s)	176
EcoRV	GATATC	1 cut(s)	694
EcoT38I	GRGCYC	1 cut(s)	228
FaeI	CATG	3 cut(s)	97, 674, 684
FalI	AAGNNNNNCTT	6 cut(s)	212, 244, 574, 606, 694, 726
FaqI	GGGAC	1 cut(s)	646
FatI	CATG	3 cut(s)	93, 670, 680
FauI	CCCGC	2 cut(s)	360, 671
Fnu4HI	GCNGC	4 cut(s)	99, 246, 432, 492
FokI	GGATG	1 cut(s)	548
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	4 cut(s)	99, 246, 432, 492
FspBI	CTAG	1 cut(s)	455
GlaI	GCGC	1 cut(s)	679
GluI	GCNGC	4 cut(s)	99, 246, 432, 492
GsuI	CTGGAG	1 cut(s)	70
HaeIII	GGCC	4 cut(s)	248, 414, 434, 706
HapII	CCGG	1 cut(s)	428
HhaI	GCGC	1 cut(s)	680
Hin1II	CATG	3 cut(s)	97, 674, 684
Hin6I	GCGC	1 cut(s)	678
HinP1I	GCGC	1 cut(s)	678
HindIII	AAGCTT	1 cut(s)	583
HinfI	GANTC	4 cut(s)	90, 117, 299, 547
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	3 cut(s)	221, 370, 596
Hpy166II	GTNNAC	2 cut(s)	112, 212
Hpy188I	TCNGA	2 cut(s)	30, 365
Hpy188III	TCNNGA	2 cut(s)	87, 533
Hpy8I	GTNNAC	2 cut(s)	112, 212
HpyAV	CCTTC	2 cut(s)	238, 620
HpyCH4V	TGCA	3 cut(s)	10, 40, 733
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 521, 707
HpyF3I	CTNAG	3 cut(s)	52, 372, 558
Hsp92II	CATG	3 cut(s)	97, 674, 684
HspAI	GCGC	1 cut(s)	678
Kzo9I	GATC	6 cut(s)	279, 283, 360, 444, 598, 641
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	9 cut(s)	100, 192, 277, 341, 441, 518, 539, 561, 720
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	1 cut(s)	478
MaeI	CTAG	1 cut(s)	455
MalI	GATC	6 cut(s)	281, 285, 362, 446, 600, 643
MboI	GATC	6 cut(s)	279, 283, 360, 444, 598, 641
MboII	GAAGA	4 cut(s)	285, 388, 593, 658
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	3 cut(s)	176, 309, 384
MlyI	GAGTC	1 cut(s)	99
MnlI	CCTC	6 cut(s)	94, 248, 397, 403, 445, 496
MroXI	GAANNNNTTC	1 cut(s)	653
MseI	TTAA	3 cut(s)	288, 459, 474
MslI	CAYNNNNRTG	2 cut(s)	333, 397
MspA1I	CMGCKG	1 cut(s)	355
MspCI	CTTAAG	1 cut(s)	287
MspI	CCGG	1 cut(s)	428
MspR9I	CCNGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	3 cut(s)	16, 521, 707
NciI	CCSGG	1 cut(s)	428
NdeII	GATC	6 cut(s)	279, 283, 360, 444, 598, 641
NlaIII	CATG	3 cut(s)	97, 674, 684
NlaIV	GGNNCC	2 cut(s)	225, 349
NspV	TTCGAA	1 cut(s)	271
PdmI	GAANNNNTTC	1 cut(s)	653
PfeI	GAWTC	3 cut(s)	117, 299, 547
PkrI	GCNGC	4 cut(s)	100, 247, 433, 493
Ple19I	CGATCG	1 cut(s)	644
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
PspN4I	GGNNCC	2 cut(s)	225, 349
PspPI	GGNCC	2 cut(s)	109, 412
PvuI	CGATCG	1 cut(s)	644
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
RseI	CAYNNNNRTG	2 cut(s)	333, 397
SaqAI	TTAA	3 cut(s)	288, 459, 474
SatI	GCNGC	4 cut(s)	99, 246, 432, 492
Sau3AI	GATC	6 cut(s)	279, 283, 360, 444, 598, 641
Sau96I	GGNCC	2 cut(s)	109, 412
ScaI	AGTACT	1 cut(s)	569
SchI	GAGTC	1 cut(s)	99
ScrFI	CCNGG	1 cut(s)	428
SduI	GDGCHC	1 cut(s)	228
SfaNI	GCATC	1 cut(s)	478
SfuI	TTCGAA	1 cut(s)	271
SinI	GGWCC	1 cut(s)	109
SmiMI	CAYNNNNRTG	2 cut(s)	333, 397
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	3 cut(s)	176, 309, 384
SsiI	CCGC	6 cut(s)	132, 245, 353, 431, 491, 664
SspMI	CTAG	1 cut(s)	455
StyD4I	CCNGG	1 cut(s)	426
TaqI	TCGA	9 cut(s)	174, 180, 195, 271, 282, 423, 563, 640, 644
TasI	AATT	3 cut(s)	176, 309, 384
TatI	WGTACW	1 cut(s)	567
TauI	GCSGC	3 cut(s)	248, 434, 494
TfiI	GAWTC	3 cut(s)	117, 299, 547
Tru1I	TTAA	3 cut(s)	288, 459, 474
Tru9I	TTAA	3 cut(s)	288, 459, 474
TseI	GCWGC	1 cut(s)	98
TspDTI	ATGAA	2 cut(s)	220, 525
TspGWI	ACGGA	2 cut(s)	129, 292
Vha464I	CTTAAG	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	109
XapI	RAATTY	1 cut(s)	176
XcmI	CCANNNNNNNNNTGG	1 cut(s)	523
XmnI	GAANNNNTTC	1 cut(s)	653
XspI	CTAG	1 cut(s)	455
ZrmI	AGTACT	1 cut(s)	569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.