Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002079

Physical Location & Seq

Genomic Coordinates Forward (+)

20684695 .. 20686140

Gene Structure 1446 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGACACAGCTCACTGGCCACAGGGTATTGGAGTGGTTAACTCCATGGAAGATTTTTCTTCTACAAGGCCAATCACAGAGAGAAGGGCAAGGCCTCAAAAGGATCAAGCTTTGAATTGTCCAAGGTGCAATTCCACCACCACAAAATTCTGTTATTACAACAATTACAGCCTCTCTCAGCCAAGATACTTTTGCAAGACTTGTAGAAGGTATTGGACTGAAGGTGGATCTCTGAGAAATGTTCCGGTGGGTGGAGGGTCACGGAAGAACAACAAGAGATCAAATAATTCCGATTCATCATCACCGTCCACGTCTTCAGCGAAGAAGGTTGCTCATGATCGTGATCACCATCTGACCCCACAAAGTAATTTTCCTTCTCAGTCTGCTTCTCAAAACCCTAATAAGATCCACTTCCAAGGTCAAGATCTCAACCTTGCATACCCACCAGCTGATCAGGAACATGACAACAATAATATTACCGAACTACCCTTTAGTATTGAGTCTATTGACAACAGAACCTACCACCACCAAAACCCTAGCTCCTCAGCCACTACTACTACATCTCATCATTTCTCATCGGCTATGGAACTGCTCAAAAGTACTGGGATTGCATCAAGGGGCCTGACTTCTTTCGTGCCGATGGCGGCGGTGGAGGTGCCGGATCATTCAAGTAATATCACAATGTTTTCATCTGGGTTTCCTATGCAAGAGTTTAAGCCAAGTCGGCTTAGTTTTTCTCTAGATGGGTTTGAGAGTGCTGGATTTGGTGGCTGTCTTCAAGGGGTGCAAGAGACTACTAATACTAATCATGCAAGGCTTTTGTTTCCTACTGCTCAGGATTTGAAGCAGCAGATTCCGAGCTCTACTACTACTGCTGCTGATTTTGATCAGCACAATAATAGAGGAGGAGGAGATTCCGGTGGTGGGTATTTGAATGGAATGTTAGGTGGAGGATCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

321

Amino Acids

35.07

Weight (kDa)

7.72

Isoelectric Point (pI)

55.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	35 - 92	7.7e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46590 AT2G46590 AT3G61850 AT3G61850 AT3G61850 AT3G61850 AT3G61850
fragaria_vesca	FvH4_7g17000 FvH4_7g17000 FvH4_7g17000 FvH4_7g32170 FvH4_7g32170 FvH4_7g32170
malus_domestica	MD01G1084700.v1.1 MD01G1224500.v1.1 MD07G1153300.v1.1 MD07G1295200.v1.1
prunus_persica	Prupe.2G192300_v2.0.a1 Prupe.2G192300_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1 Prupe.2G314800_v2.0.a1
pyrus_communis	pycom01g23320 pycom07g26780
rosa_chinensis	RchiOBHm_Chr1g0360381 RchiOBHm_Chr1g0381791
rosa_laevigata	RLG00000026205 RLG00000027812
rosa_multiflora	Rmu_sc0008418.1_g000008 Rmu_ssc0000368.1_g000076
rosa_roxburghii	Rroxscaffold_4G00278450 Rroxscaffold_4G00296170
rosa_rugosa	Rorug01G0276400 Rorug01G0276500 Rorug01G0431000
rosa_samantha	Rh1AG290500 Rh1AG454400 Rh1BG255600 Rh1CG273300 Rh1CG426000 Rh1DG285400 Rh1DG443700
rosa_wichuraiana	Rw1G025720 Rw1G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	655
AciI	CCGC	2 cut(s)	644, 647
AclWI	GGATC	5 cut(s)	111, 235, 400, 669, 961
AcoI	YGGCCR	1 cut(s)	17
AcsI	RAATTY	1 cut(s)	146
AcuI	CTGAAG	2 cut(s)	240, 300
AfaI	GTAC	1 cut(s)	601
AfiI	CCNNNNNNNGG	2 cut(s)	251, 924
AgsI	TTSAA	5 cut(s)	115, 669, 779, 844, 934
AjiI	CACGTC	1 cut(s)	312
AjuI	GAANNNNNNNTTGG	2 cut(s)	115, 147
AluBI	AGCT	5 cut(s)	11, 110, 449, 540, 861
AluI	AGCT	5 cut(s)	11, 110, 449, 540, 861
Alw21I	GWGCWC	1 cut(s)	863
Alw26I	GTCTC	1 cut(s)	785
AlwI	GGATC	5 cut(s)	111, 235, 400, 669, 961
AoxI	GGCC	4 cut(s)	17, 68, 92, 619
ApeKI	GCWGC	2 cut(s)	847, 875
ApoI	RAATTY	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	619
AsuHPI	GGTGA	2 cut(s)	294, 338
BalI	TGGCCA	1 cut(s)	19
BanI	GGYRCC	1 cut(s)	655
BanII	GRGCYC	1 cut(s)	863
BarI	GAAGNNNNNNTAC	2 cut(s)	358, 390
BbsI	GAAGAC	2 cut(s)	306, 767
Bbv12I	GWGCWC	1 cut(s)	863
BbvCI	CCTCAGC	1 cut(s)	544
BbvI	GCAGC	2 cut(s)	859, 862
BccI	CCATC	3 cut(s)	357, 634, 737
BclI	TGATCA	3 cut(s)	343, 451, 886
BcoDI	GTCTC	1 cut(s)	785
BfaI	CTAG	2 cut(s)	537, 740
BglI	GCCNNNNNGGC	1 cut(s)	724
BglII	AGATCT	1 cut(s)	424
BisI	GCNGC	3 cut(s)	645, 848, 876
BlsI	GCNGC	3 cut(s)	646, 849, 877
BmcAI	AGTACT	1 cut(s)	601
BmgBI	CACGTC	1 cut(s)	312
BmgT120I	GGNCC	1 cut(s)	619
BmiI	GGNNCC	2 cut(s)	620, 657
BmrI	ACTGGG	1 cut(s)	612
BmsI	GCATC	1 cut(s)	620
BmuI	ACTGGG	1 cut(s)	612
BpiI	GAAGAC	2 cut(s)	306, 767
Bpu10I	CCTNAGC	2 cut(s)	544, 834
BsaBI	GATNNNNATC	3 cut(s)	342, 348, 885
BsaJI	CCNNGG	3 cut(s)	45, 122, 415
BsaWI	WCCGGW	2 cut(s)	244, 917
BsaXI	ACNNNNNCTCC	2 cut(s)	524, 554
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 924
Bse1I	ACTGG	2 cut(s)	20, 607
Bse8I	GATNNNNATC	3 cut(s)	342, 348, 885
BseDI	CCNNGG	3 cut(s)	45, 122, 415
BseJI	GATNNNNATC	3 cut(s)	342, 348, 885
BseLI	CCNNNNNNNGG	2 cut(s)	251, 924
BseMII	CTCAG	5 cut(s)	191, 224, 392, 558, 848
BseNI	ACTGG	2 cut(s)	20, 607
BseRI	GAGGAG	4 cut(s)	532, 918, 921, 924
BseXI	GCAGC	2 cut(s)	859, 862
BshFI	GGCC	4 cut(s)	19, 70, 94, 621
BshNI	GGYRCC	1 cut(s)	655
BsiHKAI	GWGCWC	1 cut(s)	863
BsiSI	CCGG	3 cut(s)	245, 659, 918
BslI	CCNNNNNNNGG	2 cut(s)	251, 924
BsmAI	GTCTC	1 cut(s)	785
BsnI	GGCC	4 cut(s)	19, 70, 94, 621
Bsp1286I	GDGCHC	1 cut(s)	863
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	2 cut(s)	644, 647
BspANI	GGCC	4 cut(s)	19, 70, 94, 621
BspCNI	CTCAG	5 cut(s)	190, 225, 391, 557, 847
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	2 cut(s)	620, 657
BspPI	GGATC	5 cut(s)	111, 235, 400, 669, 961
BspT107I	GGYRCC	1 cut(s)	655
BsrI	ACTGG	2 cut(s)	20, 607
BssECI	CCNNGG	3 cut(s)	45, 122, 415
BssT1I	CCWWGG	3 cut(s)	45, 122, 415
Bst4CI	ACNGT	1 cut(s)	306
BstDEI	CTNAG	6 cut(s)	177, 233, 378, 544, 728, 834
BstDSI	CCRYGG	1 cut(s)	45
BstMAI	GTCTC	1 cut(s)	785
BstMWI	GCNNNNNNNGC	1 cut(s)	724
BstV1I	GCAGC	2 cut(s)	859, 862
BstV2I	GAAGAC	2 cut(s)	306, 767
BstX2I	RGATCY	3 cut(s)	227, 405, 424
BstYI	RGATCY	3 cut(s)	227, 405, 424
BsuRI	GGCC	4 cut(s)	19, 70, 94, 621
BtgI	CCRYGG	1 cut(s)	45
BtrI	CACGTC	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	13
CciI	TCATGA	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	619
Csp6I	GTAC	1 cut(s)	600
CviAII	CATG	5 cut(s)	46, 335, 461, 809, 957
CviQI	GTAC	1 cut(s)	600
DdeI	CTNAG	6 cut(s)	177, 233, 378, 544, 728, 834
EaeI	YGGCCR	1 cut(s)	17
Ecl136II	GAGCTC	1 cut(s)	861
Eco130I	CCWWGG	3 cut(s)	45, 122, 415
Eco147I	AGGCCT	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	863
Eco53kI	GAGCTC	1 cut(s)	861
Eco57I	CTGAAG	2 cut(s)	240, 300
EcoICRI	GAGCTC	1 cut(s)	861
EcoO109I	RGGNCCY	1 cut(s)	619
EcoT14I	CCWWGG	3 cut(s)	45, 122, 415
EcoT38I	GRGCYC	1 cut(s)	863
ErhI	CCWWGG	3 cut(s)	45, 122, 415
FaeI	CATG	5 cut(s)	49, 338, 464, 812, 960
FaiI	YATR	8 cut(s)	47, 336, 439, 462, 584, 704, 810, 958
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FatI	CATG	5 cut(s)	45, 334, 460, 808, 956
FbaI	TGATCA	3 cut(s)	343, 451, 886
Fnu4HI	GCNGC	3 cut(s)	645, 848, 876
FriOI	GRGCYC	1 cut(s)	863
Fsp4HI	GCNGC	3 cut(s)	645, 848, 876
FspBI	CTAG	2 cut(s)	537, 740
GluI	GCNGC	3 cut(s)	645, 848, 876
HaeIII	GGCC	4 cut(s)	19, 70, 94, 621
HapII	CCGG	3 cut(s)	245, 659, 918
Hin1II	CATG	5 cut(s)	49, 338, 464, 812, 960
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	4 cut(s)	293, 500, 853, 914
HpaI	GTTAAC	1 cut(s)	40
HpaII	CCGG	3 cut(s)	245, 659, 918
HphI	GGTGA	2 cut(s)	294, 338
Hpy166II	GTNNAC	2 cut(s)	40, 309
Hpy188I	TCNGA	4 cut(s)	234, 292, 354, 858
Hpy188III	TCNNGA	6 cut(s)	335, 341, 422, 455, 740, 836
Hpy8I	GTNNAC	2 cut(s)	40, 309
HpyAV	CCTTC	5 cut(s)	78, 201, 215, 319, 384
HpyCH4III	ACNGT	1 cut(s)	306
HpyCH4IV	ACGT	1 cut(s)	311
HpyCH4V	TGCA	7 cut(s)	129, 195, 437, 611, 706, 787, 812
HpyF10VI	GCNNNNNNNGC	1 cut(s)	724
HpyF3I	CTNAG	6 cut(s)	177, 233, 378, 544, 728, 834
HpySE526I	ACGT	1 cut(s)	311
Hsp92II	CATG	5 cut(s)	49, 338, 464, 812, 960
Ksp22I	TGATCA	3 cut(s)	343, 451, 886
KspAI	GTTAAC	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	545
Lsp1109I	GCAGC	2 cut(s)	859, 862
LweI	GCATC	1 cut(s)	620
MaeI	CTAG	2 cut(s)	537, 740
MaeII	ACGT	1 cut(s)	311
MaeIII	GTNAC	1 cut(s)	258
MboII	GAAGA	6 cut(s)	51, 62, 277, 306, 334, 767
MflI	RGATCY	3 cut(s)	227, 405, 424
MhlI	GDGCHC	1 cut(s)	863
MlsI	TGGCCA	1 cut(s)	19
MluCI	AATT	6 cut(s)	115, 130, 146, 163, 286, 367
MluNI	TGGCCA	1 cut(s)	19
MlyI	GAGTC	1 cut(s)	509
MnlI	CCTC	9 cut(s)	105, 182, 248, 553, 646, 896, 899, 902, 944
Mox20I	TGGCCA	1 cut(s)	19
MscI	TGGCCA	1 cut(s)	19
MseI	TTAA	2 cut(s)	39, 714
MslI	CAYNNNNRTG	1 cut(s)	339
Msp20I	TGGCCA	1 cut(s)	19
MspA1I	CMGCKG	1 cut(s)	449
MspI	CCGG	3 cut(s)	245, 659, 918
MwoI	GCNNNNNNNGC	1 cut(s)	724
NcoI	CCATGG	1 cut(s)	45
NlaIII	CATG	5 cut(s)	49, 338, 464, 812, 960
NlaIV	GGNNCC	2 cut(s)	620, 657
NmuCI	GTSAC	1 cut(s)	258
PagI	TCATGA	1 cut(s)	334
PceI	AGGCCT	1 cut(s)	94
PcsI	WCGNNNNNNNCGW	1 cut(s)	317
PfeI	GAWTC	3 cut(s)	293, 853, 914
PkrI	GCNGC	3 cut(s)	646, 849, 877
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
Psp124BI	GAGCTC	1 cut(s)	863
PspN4I	GGNNCC	2 cut(s)	620, 657
PspPI	GGNCC	1 cut(s)	619
PsuI	RGATCY	3 cut(s)	227, 405, 424
PvuII	CAGCTG	1 cut(s)	449
RsaI	GTAC	1 cut(s)	601
RsaNI	GTAC	1 cut(s)	600
RseI	CAYNNNNRTG	1 cut(s)	339
SacI	GAGCTC	1 cut(s)	863
SaqAI	TTAA	2 cut(s)	39, 714
SatI	GCNGC	3 cut(s)	645, 848, 876
Sau96I	GGNCC	1 cut(s)	619
ScaI	AGTACT	1 cut(s)	601
SchI	GAGTC	1 cut(s)	509
SduI	GDGCHC	1 cut(s)	863
SfaNI	GCATC	1 cut(s)	620
SmiMI	CAYNNNNRTG	1 cut(s)	339
Sse9I	AATT	6 cut(s)	115, 130, 146, 163, 286, 367
SseBI	AGGCCT	1 cut(s)	94
SsiI	CCGC	2 cut(s)	644, 647
SspI	AATATT	1 cut(s)	475
SspMI	CTAG	2 cut(s)	537, 740
SstI	GAGCTC	1 cut(s)	863
StuI	AGGCCT	1 cut(s)	94
StyI	CCWWGG	3 cut(s)	45, 122, 415
TaaI	ACNGT	1 cut(s)	306
TaiI	ACGT	1 cut(s)	314
TasI	AATT	6 cut(s)	115, 130, 146, 163, 286, 367
TatI	WGTACW	1 cut(s)	599
TauI	GCSGC	1 cut(s)	647
TfiI	GAWTC	3 cut(s)	293, 853, 914
Tru1I	TTAA	2 cut(s)	39, 714
Tru9I	TTAA	2 cut(s)	39, 714
TscAI	CASTG	1 cut(s)	20
TseFI	GTSAC	1 cut(s)	258
TseI	GCWGC	2 cut(s)	847, 875
Tsp45I	GTSAC	1 cut(s)	258
TspDTI	ATGAA	2 cut(s)	285, 678
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	1 cut(s)	20
XapI	RAATTY	1 cut(s)	146
XbaI	TCTAGA	1 cut(s)	739
XspI	CTAG	2 cut(s)	537, 740
ZrmI	AGTACT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.