Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003680

Physical Location & Seq

Genomic Coordinates Forward (+)

4849769 .. 4851001

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g06990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGAAGGGGGAAAAGGCGTGGGGGAGAAGAAAGGAACAAACGATGTGGTTTTGCAGATTTCTGTCGGAGAAGAACAAACGAGATACAGTAACGAAATAAGAGACTCGAATCTCCAGCTGACAGAGCTTCAGAGCCTCAGGGTCTCCGGCTCTGCTTCTCCAGAAATCCCAAAGCCGAGTCCCTCCCCGCCGCCGGGGAAGCCGCCGAAAATCCCAGCCGAACCCACTTCCCGGCGAGATTCGTTTTCCCGGTCGACGTTCTCGAAGCCCAAGTCGAGGTTCGTGGAGCCGGTTCCTCCTGCTGAAAAGAAGGCGACCGACGAAATTCCCCAGTTGAAGTCGACTGCTAATTCCCCCAATGTGGCATCGCCAAGCTCCAAAATCGCAGCCACAGCACCTAGAGACGCTCTGAGATCAGCCCCGATAACCCCACGAACGCCGTTGATCAACGGTAGCGAGGACGACGACGATGAGGAGGTTTACAAGACTGCAAAGCTTAAGGTGCGTGAGAAGTCTGGTAAGAAGATGAAAAAGTTGGCACTAATTGAGTTGATTGCATTTGCTTGTATTGTTGGGTTTTTGATTGCTTGCTTAACCGTTCCTAAGTTGGAAAAGAAGATGTATTGGGGGTTGGAATTGTGGAAATGGTCTGTCTTGGTGTTGGTTGTTTTGTGTGGTAGATTGGTCACAGAATGGTTTATCAATGTTCTGGTTTTCGTGATTGAGTTGAACTTTTTGCTTAAGAAGAATGTTCTGTATTTCGTTTACGGGTTGAAAAGAAGCGTACAGATTTTTATTTGGTTGGGTTTGGTTCTTCTGGCATGGGGTTTGTTGTTCGACCGCGGAGTGAAGAGGTCAAGGAAAACCTCTAGGATTCTAGGTTACGTTACAAGGGGTCTAGCTTCGTGTCTAATTGGAGCGGGCATATGGCTGTTGAAGAATTTGTTTGTCAAAGTGGTAGCTTCTTCGTTCCAATGCAATAGATTCTTTGATCGGATTCAAGAATCAATTTTTCATCAGTATGTTCTCCGCACCCTTTCCGGGCCTCCTCTGATGGAAATGGCAGAAAGAGTCGGGAAGACCCCGAGTAGGGGCCAGTTGAGCTTCAAAAATTTAAAGGGAGGGAAAAAGGAGGGGAAGGAAGGGCCCAAAGAAGAGGTCGATCGATGTAGAAAAGCTAAAAAAGATGAACCAAAAGAAAATTTCTGCTTGGACTTTGAAAGGGTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel PsbX

Protein Analysis

411

Amino Acids

45.88

Weight (kDa)

9.69

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Msy1	PF25886	185 - 324	2.4e-06	Mechanosensitive ion channel protein Msy1-like, transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003680)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08260 FvH4_1g08260 FvH4_1g08260 FvH4_1g08260
malus_domestica	MD02G1086900.v1.1 MD02G1087000.v1.1 MD15G1214500.v1.1 MD15G1214600.v1.1
prunus_persica	Prupe.7G202700_v2.0.a1
pyrus_communis	pycom02g06990 pycom02g07000 pycom15g19040
rosa_chinensis	RchiOBHm_Chr2g0094331
rosa_laevigata	RLG00000016480
rosa_multiflora	Rmu_sc0003819.1_g000016 Rmu_sc0025410.1_g000001 Rmu_sc0025411.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147230 Rroxscaffold_7G00185070
rosa_rugosa	Rorug02G0043300 Rorug02G0043300
rosa_samantha	Rh2AG091000 Rh2AG091100 Rh2BG090900 Rh2CG093400 Rh2CG093500 Rh2DG089900 Rh6AG505100 Rh6BG272500 Rh6CG273600 Rh6CG521500 Rh6CG521800 Rh6DG266600 Rh6DG507600
rosa_wichuraiana	Rw6G043950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	920
AccI	GTMKAC	2 cut(s)	254, 341
AccII	CGCG	1 cut(s)	843
AciI	CCGC	7 cut(s)	188, 191, 203, 841, 843, 920, 1030
AcsI	RAATTY	4 cut(s)	324, 940, 1111, 1201
AcuI	CTGAAG	1 cut(s)	113
AfaI	GTAC	1 cut(s)	786
AfiI	CCNNNNNNNGG	9 cut(s)	193, 194, 231, 276, 361, 1041, 1089, 1090, 1091
AflII	CTTAAG	2 cut(s)	497, 740
AgsI	TTSAA	7 cut(s)	337, 730, 775, 937, 1001, 1108, 1220
AjuI	GAANNNNNNNTTGG	2 cut(s)	263, 295
AluBI	AGCT	8 cut(s)	118, 127, 375, 496, 902, 962, 1104, 1178
AluI	AGCT	8 cut(s)	118, 127, 375, 496, 902, 962, 1104, 1178
Alw26I	GTCTC	3 cut(s)	96, 148, 396
Ama87I	CYCGRG	1 cut(s)	1084
AoxI	GGCC	3 cut(s)	1043, 1093, 1145
ApaI	GGGCCC	1 cut(s)	1149
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	4 cut(s)	324, 940, 1111, 1201
ArsI	GACNNNNNNTTYG	4 cut(s)	257, 289, 1143, 1175
AspS9I	GGNCC	4 cut(s)	1043, 1093, 1145, 1146
AsuC2I	CCSGG	4 cut(s)	195, 232, 250, 1042
AvaI	CYCGRG	1 cut(s)	1084
AxyI	CCTNAGG	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	1149
BanII	GRGCYC	1 cut(s)	1149
BbsI	GAAGAC	1 cut(s)	1085
BbvI	GCAGC	1 cut(s)	398
BccI	CCATC	1 cut(s)	1048
BceAI	ACGGC	1 cut(s)	424
BclI	TGATCA	1 cut(s)	444
BcnI	CCSGG	4 cut(s)	195, 232, 250, 1042
BcoDI	GTCTC	3 cut(s)	96, 148, 396
BfaI	CTAG	4 cut(s)	399, 870, 878, 899
BfrI	CTTAAG	2 cut(s)	497, 740
BisI	GCNGC	3 cut(s)	191, 203, 387
BlsI	GCNGC	3 cut(s)	192, 204, 388
Bme1390I	CCNGG	4 cut(s)	195, 232, 250, 1042
BmeT110I	CYCGRG	1 cut(s)	1084
BmgT120I	GGNCC	4 cut(s)	1043, 1093, 1145, 1146
BmiI	GGNNCC	4 cut(s)	288, 294, 1094, 1147
BmrFI	CCNGG	4 cut(s)	195, 232, 250, 1042
BmrI	ACTGGG	1 cut(s)	325
BmsI	GCATC	1 cut(s)	374
BmuI	ACTGGG	1 cut(s)	325
BpiI	GAAGAC	1 cut(s)	1085
BpmI	CTGGAG	2 cut(s)	98, 144
BpuMI	CCSGG	4 cut(s)	195, 232, 250, 1042
Bsa29I	ATCGAT	1 cut(s)	1165
BsaI	GGTCTC	1 cut(s)	148
BsaJI	CCNNGG	2 cut(s)	194, 841
Bsc4I	CCNNNNNNNGG	9 cut(s)	193, 194, 231, 276, 361, 1041, 1089, 1090, 1091
Bse118I	RCCGGY	1 cut(s)	289
Bse1I	ACTGG	2 cut(s)	331, 1096
Bse21I	CCTNAGG	1 cut(s)	137
BseCI	ATCGAT	1 cut(s)	1165
BseDI	CCNNGG	2 cut(s)	194, 841
BseLI	CCNNNNNNNGG	9 cut(s)	193, 194, 231, 276, 361, 1041, 1089, 1090, 1091
BseMII	CTCAG	2 cut(s)	151, 401
BseNI	ACTGG	2 cut(s)	331, 1096
BseRI	GAGGAG	2 cut(s)	488, 1038
BseSI	GKGCMC	1 cut(s)	1149
BseXI	GCAGC	1 cut(s)	398
BseYI	CCCAGC	1 cut(s)	214
Bsh1236I	CGCG	1 cut(s)	843
Bsh1285I	CGRYCG	4 cut(s)	254, 318, 841, 1165
BshFI	GGCC	3 cut(s)	1045, 1095, 1147
BshVI	ATCGAT	1 cut(s)	1165
BsiEI	CGRYCG	4 cut(s)	254, 318, 841, 1165
BsiHKCI	CYCGRG	1 cut(s)	1084
BsiSI	CCGG	6 cut(s)	147, 194, 232, 250, 290, 1041
BslFI	GGGAC	1 cut(s)	165
BslI	CCNNNNNNNGG	9 cut(s)	193, 194, 231, 276, 361, 1041, 1089, 1090, 1091
BsmAI	GTCTC	3 cut(s)	96, 148, 396
BsmBI	CGTCTC	1 cut(s)	396
BsmFI	GGGAC	1 cut(s)	165
BsnI	GGCC	3 cut(s)	1045, 1095, 1147
Bso31I	GGTCTC	1 cut(s)	148
BsoBI	CYCGRG	1 cut(s)	1084
Bsp120I	GGGCCC	1 cut(s)	1145
Bsp1286I	GDGCHC	1 cut(s)	1149
Bsp143I	GATC	4 cut(s)	413, 444, 991, 1162
BspACI	CCGC	7 cut(s)	188, 191, 203, 841, 843, 920, 1030
BspANI	GGCC	3 cut(s)	1045, 1095, 1147
BspCNI	CTCAG	2 cut(s)	150, 402
BspDI	ATCGAT	1 cut(s)	1165
BspFNI	CGCG	1 cut(s)	843
BspLI	GGNNCC	4 cut(s)	288, 294, 1094, 1147
BspTI	CTTAAG	2 cut(s)	497, 740
BspTNI	GGTCTC	1 cut(s)	148
BsrBI	CCGCTC	1 cut(s)	920
BsrFI	RCCGGY	1 cut(s)	289
BsrI	ACTGG	2 cut(s)	331, 1096
BssAI	RCCGGY	1 cut(s)	289
BssECI	CCNNGG	2 cut(s)	194, 841
BssMI	GATC	4 cut(s)	413, 444, 991, 1162
Bst4CI	ACNGT	3 cut(s)	89, 452, 598
Bst6I	CTCTTC	2 cut(s)	845, 1149
BstAFI	CTTAAG	2 cut(s)	497, 740
BstC8I	GCNNGC	2 cut(s)	589, 922
BstDEI	CTNAG	3 cut(s)	137, 410, 603
BstDSI	CCRYGG	1 cut(s)	841
BstFNI	CGCG	1 cut(s)	843
BstKTI	GATC	4 cut(s)	416, 447, 994, 1165
BstMAI	GTCTC	3 cut(s)	96, 148, 396
BstMBI	GATC	4 cut(s)	413, 444, 991, 1162
BstMCI	CGRYCG	4 cut(s)	254, 318, 841, 1165
BstMWI	GCNNNNNNNGC	5 cut(s)	124, 199, 392, 502, 1101
BstSCI	CCNGG	4 cut(s)	193, 230, 248, 1040
BstSLI	GKGCMC	1 cut(s)	1149
BstUI	CGCG	1 cut(s)	843
BstV1I	GCAGC	1 cut(s)	398
BstV2I	GAAGAC	1 cut(s)	1085
Bsu15I	ATCGAT	1 cut(s)	1165
Bsu36I	CCTNAGG	1 cut(s)	137
BsuRI	GGCC	3 cut(s)	1045, 1095, 1147
BsuTUI	ATCGAT	1 cut(s)	1165
BtgI	CCRYGG	1 cut(s)	841
BtgZI	GCGATG	1 cut(s)	351
Cac8I	GCNNGC	2 cut(s)	589, 922
Cfr10I	RCCGGY	1 cut(s)	289
Cfr13I	GGNCC	4 cut(s)	1043, 1093, 1145, 1146
Cfr42I	CCGCGG	1 cut(s)	844
ClaI	ATCGAT	1 cut(s)	1165
CseI	GACGC	1 cut(s)	413
Csp6I	GTAC	1 cut(s)	785
CspCI	CAANNNNNGTGG	2 cut(s)	27, 62
CviAII	CATG	1 cut(s)	822
CviQI	GTAC	1 cut(s)	785
DdeI	CTNAG	3 cut(s)	137, 410, 603
DpnI	GATC	4 cut(s)	415, 446, 993, 1164
DpnII	GATC	4 cut(s)	413, 444, 991, 1162
DraI	TTTAAA	1 cut(s)	1116
Eam1104I	CTCTTC	2 cut(s)	845, 1149
EarI	CTCTTC	2 cut(s)	845, 1149
Eco24I	GRGCYC	1 cut(s)	1149
Eco31I	GGTCTC	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	113
Eco81I	CCTNAGG	1 cut(s)	137
Eco88I	CYCGRG	1 cut(s)	1084
EcoO109I	RGGNCCY	1 cut(s)	1145
EcoT38I	GRGCYC	1 cut(s)	1149
Esp3I	CGTCTC	1 cut(s)	396
FaeI	CATG	1 cut(s)	825
FaiI	YATR	4 cut(s)	823, 926, 928, 1023
FaqI	GGGAC	1 cut(s)	165
FatI	CATG	1 cut(s)	821
FauI	CCCGC	2 cut(s)	195, 913
FauNDI	CATATG	1 cut(s)	926
FbaI	TGATCA	1 cut(s)	444
FblI	GTMKAC	2 cut(s)	254, 341
Fnu4HI	GCNGC	3 cut(s)	191, 203, 387
FriOI	GRGCYC	1 cut(s)	1149
Fsp4HI	GCNGC	3 cut(s)	191, 203, 387
FspBI	CTAG	4 cut(s)	399, 870, 878, 899
GluI	GCNGC	3 cut(s)	191, 203, 387
GsaI	CCCAGC	1 cut(s)	218
GsuI	CTGGAG	2 cut(s)	98, 144
HaeIII	GGCC	3 cut(s)	1045, 1095, 1147
HapII	CCGG	6 cut(s)	147, 194, 232, 250, 290, 1041
HgaI	GACGC	1 cut(s)	413
Hin1II	CATG	1 cut(s)	825
HincII	GTYRAC	2 cut(s)	255, 342
HindII	GTYRAC	2 cut(s)	255, 342
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	9 cut(s)	104, 109, 178, 239, 874, 984, 997, 1004, 1071
HpaII	CCGG	6 cut(s)	147, 194, 232, 250, 290, 1041
Hpy166II	GTNNAC	4 cut(s)	255, 342, 481, 766
Hpy188I	TCNGA	5 cut(s)	68, 132, 411, 996, 1053
Hpy188III	TCNNGA	5 cut(s)	161, 262, 718, 1001, 1075
Hpy8I	GTNNAC	4 cut(s)	255, 342, 481, 766
Hpy99I	CGWCG	4 cut(s)	259, 323, 467, 470
HpyAV	CCTTC	3 cut(s)	304, 1132, 1136
HpyCH4III	ACNGT	3 cut(s)	89, 452, 598
HpyCH4IV	ACGT	2 cut(s)	257, 885
HpyCH4V	TGCA	4 cut(s)	55, 491, 557, 978
HpyF10VI	GCNNNNNNNGC	5 cut(s)	124, 199, 392, 502, 1101
HpyF3I	CTNAG	3 cut(s)	137, 410, 603
HpySE526I	ACGT	2 cut(s)	257, 885
Hsp92II	CATG	1 cut(s)	825
Ksp22I	TGATCA	1 cut(s)	444
KspI	CCGCGG	1 cut(s)	844
Kzo9I	GATC	4 cut(s)	413, 444, 991, 1162
LmnI	GCTCC	3 cut(s)	286, 380, 917
Lsp1109I	GCAGC	1 cut(s)	398
LweI	GCATC	1 cut(s)	374
MaeI	CTAG	4 cut(s)	399, 870, 878, 899
MaeII	ACGT	2 cut(s)	257, 885
MaeIII	GTNAC	4 cut(s)	89, 685, 881, 886
MalI	GATC	4 cut(s)	415, 446, 993, 1164
MbiI	CCGCTC	1 cut(s)	920
MboI	GATC	4 cut(s)	413, 444, 991, 1162
MhlI	GDGCHC	1 cut(s)	1149
MluCI	AATT	9 cut(s)	324, 349, 543, 635, 912, 940, 1008, 1111, 1201
MlyI	GAGTC	3 cut(s)	98, 187, 1080
MmeI	TCCRAC	3 cut(s)	46, 588, 612
MseI	TTAA	5 cut(s)	498, 593, 741, 1115, 1231
MslI	CAYNNNNRTG	1 cut(s)	1020
MspA1I	CMGCKG	2 cut(s)	118, 843
MspCI	CTTAAG	2 cut(s)	497, 740
MspI	CCGG	6 cut(s)	147, 194, 232, 250, 290, 1041
MspR9I	CCNGG	4 cut(s)	195, 232, 250, 1042
MvnI	CGCG	1 cut(s)	843
MwoI	GCNNNNNNNGC	5 cut(s)	124, 199, 392, 502, 1101
NciI	CCSGG	4 cut(s)	195, 232, 250, 1042
NdeI	CATATG	1 cut(s)	926
NdeII	GATC	4 cut(s)	413, 444, 991, 1162
NlaIII	CATG	1 cut(s)	825
NlaIV	GGNNCC	4 cut(s)	288, 294, 1094, 1147
NmeAIII	GCCGAG	1 cut(s)	201
NmuCI	GTSAC	1 cut(s)	685
PcsI	WCGNNNNNNNCGW	1 cut(s)	260
PfeI	GAWTC	6 cut(s)	109, 239, 874, 984, 997, 1004
PkrI	GCNGC	3 cut(s)	192, 204, 388
Ple19I	CGATCG	1 cut(s)	1165
PleI	GAGTC	3 cut(s)	98, 186, 1079
PpsI	GAGTC	3 cut(s)	98, 186, 1079
PspFI	CCCAGC	1 cut(s)	214
PspN4I	GGNNCC	4 cut(s)	288, 294, 1094, 1147
PspOMI	GGGCCC	1 cut(s)	1145
PspPI	GGNCC	4 cut(s)	1043, 1093, 1145, 1146
PvuI	CGATCG	1 cut(s)	1165
PvuII	CAGCTG	1 cut(s)	118
RsaI	GTAC	1 cut(s)	786
RsaNI	GTAC	1 cut(s)	785
RseI	CAYNNNNRTG	1 cut(s)	1020
SacII	CCGCGG	1 cut(s)	844
SalI	GTCGAC	2 cut(s)	253, 340
SaqAI	TTAA	5 cut(s)	498, 593, 741, 1115, 1231
SatI	GCNGC	3 cut(s)	191, 203, 387
Sau3AI	GATC	4 cut(s)	413, 444, 991, 1162
Sau96I	GGNCC	4 cut(s)	1043, 1093, 1145, 1146
SchI	GAGTC	3 cut(s)	98, 187, 1080
ScrFI	CCNGG	4 cut(s)	195, 232, 250, 1042
SduI	GDGCHC	1 cut(s)	1149
SfaNI	GCATC	1 cut(s)	374
Sfr303I	CCGCGG	1 cut(s)	844
SgrBI	CCGCGG	1 cut(s)	844
SmiMI	CAYNNNNRTG	1 cut(s)	1020
SmlI	CTYRAG	2 cut(s)	497, 740
SmoI	CTYRAG	2 cut(s)	497, 740
Sse9I	AATT	9 cut(s)	324, 349, 543, 635, 912, 940, 1008, 1111, 1201
SsiI	CCGC	7 cut(s)	188, 191, 203, 841, 843, 920, 1030
SspMI	CTAG	4 cut(s)	399, 870, 878, 899
StyD4I	CCNGG	4 cut(s)	193, 230, 248, 1040
TaaI	ACNGT	3 cut(s)	89, 452, 598
TaiI	ACGT	2 cut(s)	260, 888
TaqI	TCGA	8 cut(s)	107, 254, 263, 275, 341, 837, 1161, 1165
TaqII	GACCGA	1 cut(s)	332
TasI	AATT	9 cut(s)	324, 349, 543, 635, 912, 940, 1008, 1111, 1201
TauI	GCSGC	2 cut(s)	193, 205
TfiI	GAWTC	6 cut(s)	109, 239, 874, 984, 997, 1004
Tru1I	TTAA	5 cut(s)	498, 593, 741, 1115, 1231
Tru9I	TTAA	5 cut(s)	498, 593, 741, 1115, 1231
TseFI	GTSAC	1 cut(s)	685
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	685
TspDTI	ATGAA	3 cut(s)	542, 1004, 1203
Vha464I	CTTAAG	2 cut(s)	497, 740
XapI	RAATTY	4 cut(s)	324, 940, 1111, 1201
XmiI	GTMKAC	2 cut(s)	254, 341
XspI	CTAG	4 cut(s)	399, 870, 878, 899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.