Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003680

Physical Location & Seq

Genomic Coordinates Forward (+)

7654324 .. 7655402

Gene Structure 1079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG093500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAACATATTGACAACGATCTTCTTGAAACCTGACAATGAGAAGATATACTATCCAAATTCAGTACTGGCTACTAAACCCATCAGCAACTTTTATAGGAGCCCGGAGATGGGTGATGCTGTTGAGTTTGCTGTTGATGTTTCTACAACAATTGACACTATTGCGAGCATGAAAGCCAGAATAAAAACGTACTTGGAGAGCAAGCCTCAGCACTGGCGTCCTGCCCATAGTGTGGCGGTGAAGGAAATTGAAGACGTAAACAAGATGACAATGGCTCTTTATATTTCTCATACTATAAATTTCCAGAACTATGGAGACAAAACCAGCCGCCGAACAGACCTAATCTTAGAGCTGAAGAAAATATTTGAAGAGCTTAATATAAAATATCACCTCCTGCCTCAGGAGATTTATCTCACCAAAGTTGGGTCAGCAACTACAGAGCTTCCACCCTCATGGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel PsbX

Protein Analysis

153

Amino Acids

17.67

Weight (kDa)

7.9

Isoelectric Point (pI)

47.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003680)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08260 FvH4_1g08260 FvH4_1g08260 FvH4_1g08260
malus_domestica	MD02G1086900.v1.1 MD02G1087000.v1.1 MD15G1214500.v1.1 MD15G1214600.v1.1
prunus_persica	Prupe.7G202700_v2.0.a1
pyrus_communis	pycom02g06990 pycom02g07000 pycom15g19040
rosa_chinensis	RchiOBHm_Chr2g0094331
rosa_laevigata	RLG00000016480
rosa_multiflora	Rmu_sc0003819.1_g000016 Rmu_sc0025410.1_g000001 Rmu_sc0025411.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147230 Rroxscaffold_7G00185070
rosa_rugosa	Rorug02G0043300 Rorug02G0043300
rosa_samantha	Rh2AG091000 Rh2AG091100 Rh2BG090900 Rh2CG093400 Rh2CG093500 Rh2DG089900 Rh6AG505100 Rh6BG272500 Rh6CG273600 Rh6CG521500 Rh6CG521800 Rh6DG266600 Rh6DG507600
rosa_wichuraiana	Rw6G043950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	232
AciI	CCGC	2 cut(s)	236, 328
AcsI	RAATTY	2 cut(s)	58, 298
AcuI	CTGAAG	1 cut(s)	374
AcyI	GRCGYC	1 cut(s)	217
AfaI	GTAC	2 cut(s)	66, 191
AfiI	CCNNNNNNNGG	5 cut(s)	109, 110, 232, 400, 423
AgsI	TTSAA	3 cut(s)	28, 251, 368
AluBI	AGCT	3 cut(s)	352, 373, 442
AluI	AGCT	3 cut(s)	352, 373, 442
Alw26I	GTCTC	1 cut(s)	309
ApoI	RAATTY	2 cut(s)	58, 298
AspLEI	GCGC	1 cut(s)	459
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	4 cut(s)	125, 250, 380, 406
AxyI	CCTNAGG	1 cut(s)	399
BanII	GRGCYC	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	258
BbvCI	CCTCAGC	1 cut(s)	207
BccI	CCATC	2 cut(s)	89, 103
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	435
BfoI	RGCGCY	1 cut(s)	460
BisI	GCNGC	1 cut(s)	328
BlsI	GCNGC	1 cut(s)	329
BmcAI	AGTACT	1 cut(s)	66
Bme1390I	CCNGG	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	258
BplI	GAGNNNNNCTC	2 cut(s)	190, 222
Bpu10I	CCTNAGC	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	5 cut(s)	109, 110, 232, 400, 423
Bse1I	ACTGG	2 cut(s)	72, 218
Bse21I	CCTNAGG	1 cut(s)	399
BseLI	CCNNNNNNNGG	5 cut(s)	109, 110, 232, 400, 423
BseMII	CTCAG	2 cut(s)	221, 413
BseNI	ACTGG	2 cut(s)	72, 218
BsiSI	CCGG	1 cut(s)	104
BslI	CCNNNNNNNGG	5 cut(s)	109, 110, 232, 400, 423
BsmAI	GTCTC	1 cut(s)	309
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	18
BspACI	CCGC	2 cut(s)	236, 328
BspCNI	CTCAG	2 cut(s)	220, 412
BspLI	GGNNCC	1 cut(s)	101
BspQI	GCTCTTC	1 cut(s)	363
BsrI	ACTGG	2 cut(s)	72, 218
BssMI	GATC	1 cut(s)	18
BssNI	GRCGYC	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	363
BstACI	GRCGYC	1 cut(s)	217
BstC8I	GCNNGC	2 cut(s)	166, 203
BstDEI	CTNAG	3 cut(s)	207, 346, 399
BstENI	CCTNNNNNAGG	1 cut(s)	398
BstH2I	RGCGCY	1 cut(s)	460
BstHHI	GCGC	1 cut(s)	459
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	1 cut(s)	435
BstV2I	GAAGAC	1 cut(s)	258
BstXI	CCANNNNNNTGG	2 cut(s)	311, 453
Bsu36I	CCTNAGG	1 cut(s)	399
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	2 cut(s)	166, 203
CfoI	GCGC	1 cut(s)	459
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	2 cut(s)	65, 190
CviAII	CATG	2 cut(s)	169, 453
CviJI	RGCY	9 cut(s)	71, 102, 176, 205, 275, 327, 352, 373, 442
CviKI_1	RGCY	9 cut(s)	71, 102, 176, 205, 275, 327, 352, 373, 442
CviQI	GTAC	2 cut(s)	65, 190
DdeI	CTNAG	3 cut(s)	207, 346, 399
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco24I	GRGCYC	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	374
Eco81I	CCTNAGG	1 cut(s)	399
EcoNI	CCTNNNNNAGG	1 cut(s)	398
EcoT38I	GRGCYC	1 cut(s)	104
FaeI	CATG	2 cut(s)	172, 456
FatI	CATG	2 cut(s)	168, 452
Fnu4HI	GCNGC	1 cut(s)	328
FriOI	GRGCYC	1 cut(s)	104
Fsp4HI	GCNGC	1 cut(s)	328
GlaI	GCGC	1 cut(s)	458
GluI	GCNGC	1 cut(s)	328
HaeII	RGCGCY	1 cut(s)	460
HapII	CCGG	1 cut(s)	104
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	1 cut(s)	459
Hin1I	GRCGYC	1 cut(s)	217
Hin1II	CATG	2 cut(s)	172, 456
Hin6I	GCGC	1 cut(s)	457
HinP1I	GCGC	1 cut(s)	457
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	4 cut(s)	125, 250, 380, 406
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188III	TCNNGA	3 cut(s)	25, 304, 401
Hpy8I	GTNNAC	1 cut(s)	259
HpyAV	CCTTC	1 cut(s)	235
HpyCH4IV	ACGT	2 cut(s)	188, 255
HpyF3I	CTNAG	3 cut(s)	207, 346, 399
HpySE526I	ACGT	2 cut(s)	188, 255
Hsp92I	GRCGYC	1 cut(s)	217
Hsp92II	CATG	2 cut(s)	172, 456
HspAI	GCGC	1 cut(s)	457
Kzo9I	GATC	1 cut(s)	18
LguI	GCTCTTC	1 cut(s)	363
LmnI	GCTCC	1 cut(s)	99
LweI	GCATC	1 cut(s)	106
MaeII	ACGT	2 cut(s)	188, 255
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	5 cut(s)	13, 55, 263, 367, 380
MfeI	CAATTG	1 cut(s)	150
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	4 cut(s)	58, 150, 246, 298
MnlI	CCTC	4 cut(s)	216, 401, 408, 460
MseI	TTAA	1 cut(s)	375
MslI	CAYNNNNRTG	1 cut(s)	451
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	104
MunI	CAATTG	1 cut(s)	150
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	2 cut(s)	172, 456
NlaIV	GGNNCC	1 cut(s)	101
PciSI	GCTCTTC	1 cut(s)	363
PflMI	CCANNNNNTGG	1 cut(s)	232
PkrI	GCNGC	1 cut(s)	329
PspN4I	GGNNCC	1 cut(s)	101
RsaI	GTAC	2 cut(s)	66, 191
RsaNI	GTAC	2 cut(s)	65, 190
RseI	CAYNNNNRTG	1 cut(s)	451
SapI	GCTCTTC	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	1 cut(s)	328
Sau3AI	GATC	1 cut(s)	18
ScaI	AGTACT	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	8 cut(s)	34, 191, 258, 342, 354, 375, 393, 444
SfaNI	GCATC	1 cut(s)	106
SfcI	CTRYAG	1 cut(s)	435
SmiMI	CAYNNNNRTG	1 cut(s)	451
Sse9I	AATT	4 cut(s)	58, 150, 246, 298
SsiI	CCGC	2 cut(s)	236, 328
SspI	AATATT	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	102
TaiI	ACGT	2 cut(s)	191, 258
TasI	AATT	4 cut(s)	58, 150, 246, 298
TatI	WGTACW	1 cut(s)	64
TauI	GCSGC	1 cut(s)	330
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	1 cut(s)	218
TspDTI	ATGAA	2 cut(s)	17, 185
TspRI	CASTG	1 cut(s)	218
Van91I	CCANNNNNTGG	1 cut(s)	232
XagI	CCTNNNNNAGG	1 cut(s)	398
XapI	RAATTY	2 cut(s)	58, 298
ZrmI	AGTACT	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.