Rorug02G0043300

Mechanosensitive ion channel protein 10-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
3393544 .. 3397877
4334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0043300.1

Sequence Viewer

Length: 1263 bp
ATGGCTTCCTTGTCTAGATTTGCTCTCAAAGATCTCAAGTTACACACTTGTGAAGCTTACTATAGGCAAAGCTCTTCTTTATCTTCAAGGAGGCTCCCAACCCATCTTGATGTAAGAGGTGAAATTTCTGTGCTTGAGAAGGGAAGAAGTTGTGCAATTCAAAGCAAGACATGGAGTCCGATTGTTGCTGCCGGTTCTTCAATAGTTCAAACTTCAAGGAACTCCAAAGTTCTGTGCAAGGCTGCAGCAAATGCATCTGGAGATCTTCCCAATCCTACTGGAATGAGCCAGTATGAGAGAATAATTGAAACTTTGACAACTCTATTTCCTGTATGGGTCATATTGGGCACCATTGTTGGGATCTACAAACCATCTGCTGTTACTTGGTTGGAGACAGACCTTTTTACCCTTGGCCTTGGTTTCCTCATGCTTTCTATGGGTTTGACGTTAACTTTTGAGGATTTTAGACGATGCTTGCGTAATCCTTGGACTGTTGGTGTAGGATTTCTTGCTCAGTACATAATCAAACCCTTACTAGGCTTTGTCATTGCCCTGGTAAAGATTTATGGCTTTTGGACGCTAAAGCTCTCTGCACCTATTGCTACTGGTCTTATTTTGGTCTCCTGCTGTCCTGGGGGTCAGGCATCAAATGTTGCAACTTATATCTCAAAGGGGAATGTTGCACTATCTGTTCTCATGACAACGTGTTCAACAATAGGAGCTATTGTTATGACACCTCTTCTTACCAAGCTGCTTGCTGGCCAGCTTGTTCCAGTTGATGCTGCGGGCCTAGCACTCAGCACTTTCCAAGTTGTTTTAGTGCCAACGATTATTGGAGTACTGGCAAATGAGTTCTTCCCACAGTTCACTTCAAAAATAAGCTCAGTGACACCTTTGGTTGGAGTAATTCTCACCACTCTTCTCTGTGCGAGCCCGATTGGACAAGTTTCTGCAGTCTTGAAAGCACAAGGACCGCAATTAATACTCCCGGTGGCTGCTCTACATGCTGCTGCATTTGCCATTGGCTATTGGATTTCAAGGATATCTTTTGGTGAATCCACTTCTCGTACCATATCCATAGAGTGTGGGATGCAGAGCTCGGCCCTTGGGTTTTTACTAGCTCAAAAGCATTTTACAAACCCCTTAGTTGCTGTCCCTTCTGCTGTCAGTGTTGTTTGCATGGCGCTCGGTGGCAGTGGTCTCGCTGTGTTTTGGAGAAACAAAGGCCTTCCGGTTGATGACAAAGATGATTTCAAGGAATGA

Protein Analysis

420

Amino Acids

44.72

Weight (kDa)

9.22

Isoelectric Point (pI)

34.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBF_like PF13593 129 - 384 2.6e-13 SBF-like CPA transporter family (DUF4137)
SBF PF01758 136 - 320 1.2e-53 Sodium Bile acid symporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 347
AciI CCGC 2 cut(s) 785, 974
AclWI GGATC 1 cut(s) 368
AcoI YGGCCR 1 cut(s) 760
AcsI RAATTY 1 cut(s) 123
AfaI GTAC 3 cut(s) 518, 840, 1069
AfiI CCNNNNNNNGG 3 cut(s) 357, 536, 899
AflIII ACRYGT 1 cut(s) 704
AhdI GACNNNNNGTC 1 cut(s) 174
AjnI CCWGG 2 cut(s) 552, 631
AleI CACNNNNGTG 1 cut(s) 48
AluBI AGCT 9 cut(s) 56, 72, 586, 722, 751, 766, 882, 1098, 1121
AluI AGCT 9 cut(s) 56, 72, 586, 722, 751, 766, 882, 1098, 1121
Alw21I GWGCWC 1 cut(s) 1100
Alw26I GTCTC 3 cut(s) 386, 625, 1205
AlwI GGATC 1 cut(s) 368
AoxI GGCC 5 cut(s) 412, 760, 787, 1101, 1225
ApeKI GCWGC 8 cut(s) 188, 242, 245, 751, 782, 995, 1007, 1010
ApoI RAATTY 1 cut(s) 123
AseI ATTAAT 1 cut(s) 980
AspLEI GCGC 1 cut(s) 1186
AspS9I GGNCC 3 cut(s) 787, 971, 1102
AsuC2I CCSGG 1 cut(s) 989
AsuHPI GGTGA 3 cut(s) 131, 904, 1064
AvaII GGWCC 1 cut(s) 971
BaeGI GKGCMC 1 cut(s) 350
BalI TGGCCA 1 cut(s) 762
BanI GGYRCC 1 cut(s) 347
BanII GRGCYC 2 cut(s) 935, 1100
Bbv12I GWGCWC 1 cut(s) 1100
BbvI GCAGC 8 cut(s) 175, 229, 257, 738, 769, 982, 994, 997
BccI CCATC 2 cut(s) 111, 379
BcgI CGANNNNNNTGC 4 cut(s) 1168, 1183, 1202, 1217
BciT130I CCWGG 2 cut(s) 554, 633
BcnI CCSGG 1 cut(s) 989
BcoDI GTCTC 3 cut(s) 386, 625, 1205
BfaI CTAG 4 cut(s) 15, 536, 791, 1118
BfmI CTRYAG 3 cut(s) 61, 243, 951
BfoI RGCGCY 1 cut(s) 1187
BglII AGATCT 2 cut(s) 31, 262
BisI GCNGC 8 cut(s) 189, 243, 246, 752, 783, 996, 1008, 1011
BlsI GCNGC 8 cut(s) 190, 244, 247, 753, 784, 997, 1009, 1012
BmcAI AGTACT 1 cut(s) 840
Bme1390I CCNGG 3 cut(s) 554, 633, 989
Bme18I GGWCC 1 cut(s) 971
BmeRI GACNNNNNGTC 1 cut(s) 174
BmgT120I GGNCC 3 cut(s) 787, 971, 1102
BmiI GGNNCC 2 cut(s) 95, 349
BmrFI CCNGG 3 cut(s) 554, 633, 989
BmsI GCATC 5 cut(s) 263, 461, 653, 769, 1080
BplI GAGNNNNNCTC 2 cut(s) 894, 926
BpmI CTGGAG 1 cut(s) 279
BpuEI CTTGAG 2 cut(s) 20, 155
BpuMI CCSGG 1 cut(s) 989
BsaI GGTCTC 2 cut(s) 625, 1205
BsaJI CCNNGG 6 cut(s) 409, 415, 485, 552, 632, 1105
BsaWI WCCGGW 1 cut(s) 1231
BsaXI ACNNNNNCTCC 2 cut(s) 711, 741
Bsc4I CCNNNNNNNGG 3 cut(s) 357, 536, 899
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 5 cut(s) 283, 289, 610, 773, 846
Bse3DI GCAATG 1 cut(s) 546
BseBI CCWGG 2 cut(s) 554, 633
BseDI CCNNGG 6 cut(s) 409, 415, 485, 552, 632, 1105
BseGI GGATG 1 cut(s) 1095
BseLI CCNNNNNNNGG 3 cut(s) 357, 536, 899
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 3 cut(s) 527, 811, 897
BseNI ACTGG 5 cut(s) 283, 289, 610, 773, 846
BseSI GKGCMC 1 cut(s) 350
BseXI GCAGC 8 cut(s) 175, 229, 257, 738, 769, 982, 994, 997
BsgI GTGCAG 1 cut(s) 576
BshFI GGCC 5 cut(s) 414, 762, 789, 1103, 1227
BshNI GGYRCC 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 1100
BsiSI CCGG 3 cut(s) 192, 989, 1232
BslFI GGGAC 1 cut(s) 1139
BslI CCNNNNNNNGG 3 cut(s) 357, 536, 899
BsmAI GTCTC 3 cut(s) 386, 625, 1205
BsmFI GGGAC 1 cut(s) 1139
BsnI GGCC 5 cut(s) 414, 762, 789, 1103, 1227
Bso31I GGTCTC 2 cut(s) 625, 1205
Bsp1286I GDGCHC 3 cut(s) 350, 935, 1100
Bsp143I GATC 3 cut(s) 31, 262, 360
BspACI CCGC 2 cut(s) 785, 974
BspANI GGCC 5 cut(s) 414, 762, 789, 1103, 1227
BspCNI CTCAG 3 cut(s) 526, 810, 896
BspHI TCATGA 1 cut(s) 696
BspLI GGNNCC 2 cut(s) 95, 349
BspMAI CTGCAG 2 cut(s) 247, 955
BspPI GGATC 1 cut(s) 368
BspQI GCTCTTC 1 cut(s) 79
BspT107I GGYRCC 1 cut(s) 347
BspTNI GGTCTC 2 cut(s) 625, 1205
BsrDI GCAATG 1 cut(s) 546
BsrFI RCCGGY 1 cut(s) 191
BsrI ACTGG 5 cut(s) 283, 289, 610, 773, 846
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 6 cut(s) 409, 415, 485, 552, 632, 1105
BssMI GATC 3 cut(s) 31, 262, 360
BssT1I CCWWGG 4 cut(s) 409, 415, 485, 1105
Bst2UI CCWGG 2 cut(s) 554, 633
Bst4CI ACNGT 2 cut(s) 493, 864
Bst6I CTCTTC 3 cut(s) 79, 744, 924
BstAPI GCANNNNNTGC 2 cut(s) 251, 599
BstC8I GCNNGC 6 cut(s) 476, 756, 760, 764, 787, 931
BstDEI CTNAG 4 cut(s) 513, 797, 883, 1144
BstF5I GGATG 1 cut(s) 1095
BstH2I RGCGCY 1 cut(s) 1187
BstHHI GCGC 1 cut(s) 1186
BstKTI GATC 3 cut(s) 34, 265, 363
BstMAI GTCTC 3 cut(s) 386, 625, 1205
BstMBI GATC 3 cut(s) 31, 262, 360
BstMWI GCNNNNNNNGC 5 cut(s) 251, 599, 791, 1004, 1016
BstNI CCWGG 2 cut(s) 554, 633
BstNSI RCATGY 1 cut(s) 1007
BstSCI CCNGG 3 cut(s) 552, 631, 987
BstSFI CTRYAG 3 cut(s) 61, 243, 951
BstSLI GKGCMC 1 cut(s) 350
BstV1I GCAGC 8 cut(s) 175, 229, 257, 738, 769, 982, 994, 997
BstX2I RGATCY 3 cut(s) 31, 262, 360
BstYI RGATCY 3 cut(s) 31, 262, 360
BsuRI GGCC 5 cut(s) 414, 762, 789, 1103, 1227
BtsCI GGATG 1 cut(s) 1095
BtsI GCAGTG 1 cut(s) 1201
BtsIMutI CAGTG 3 cut(s) 891, 1174, 1201
Cac8I GCNNGC 6 cut(s) 476, 756, 760, 764, 787, 931
CciI TCATGA 1 cut(s) 696
CfoI GCGC 1 cut(s) 1186
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 3 cut(s) 787, 971, 1102
CseI GACGC 1 cut(s) 586
Csp6I GTAC 3 cut(s) 517, 839, 1068
CviAII CATG 5 cut(s) 171, 427, 697, 1004, 1180
CviQI GTAC 3 cut(s) 517, 839, 1068
DdeI CTNAG 4 cut(s) 513, 797, 883, 1144
DpnI GATC 3 cut(s) 33, 264, 362
DpnII GATC 3 cut(s) 31, 262, 360
DriI GACNNNNNGTC 1 cut(s) 174
EaeI YGGCCR 1 cut(s) 760
Eam1104I CTCTTC 3 cut(s) 79, 744, 924
Eam1105I GACNNNNNGTC 1 cut(s) 174
EarI CTCTTC 3 cut(s) 79, 744, 924
Ecl136II GAGCTC 1 cut(s) 1098
Eco130I CCWWGG 4 cut(s) 409, 415, 485, 1105
Eco147I AGGCCT 1 cut(s) 1227
Eco24I GRGCYC 2 cut(s) 935, 1100
Eco31I GGTCTC 2 cut(s) 625, 1205
Eco32I GATATC 1 cut(s) 1044
Eco47I GGWCC 1 cut(s) 971
Eco53kI GAGCTC 1 cut(s) 1098
EcoICRI GAGCTC 1 cut(s) 1098
EcoRII CCWGG 2 cut(s) 552, 631
EcoRV GATATC 1 cut(s) 1044
EcoT14I CCWWGG 4 cut(s) 409, 415, 485, 1105
EcoT22I ATGCAT 1 cut(s) 256
EcoT38I GRGCYC 2 cut(s) 935, 1100
ErhI CCWWGG 4 cut(s) 409, 415, 485, 1105
FaeI CATG 5 cut(s) 174, 430, 700, 1007, 1183
FalI AAGNNNNNCTT 4 cut(s) 61, 93, 1030, 1062
FaqI GGGAC 1 cut(s) 1139
FatI CATG 5 cut(s) 170, 426, 696, 1003, 1179
FauI CCCGC 1 cut(s) 778
Fnu4HI GCNGC 8 cut(s) 189, 243, 246, 752, 783, 996, 1008, 1011
FokI GGATG 1 cut(s) 1102
FriOI GRGCYC 2 cut(s) 935, 1100
Fsp4HI GCNGC 8 cut(s) 189, 243, 246, 752, 783, 996, 1008, 1011
FspBI CTAG 4 cut(s) 15, 536, 791, 1118
GlaI GCGC 1 cut(s) 1185
GluI GCNGC 8 cut(s) 189, 243, 246, 752, 783, 996, 1008, 1011
GsuI CTGGAG 1 cut(s) 279
HaeII RGCGCY 1 cut(s) 1187
HaeIII GGCC 5 cut(s) 414, 762, 789, 1103, 1227
HapII CCGG 3 cut(s) 192, 989, 1232
HgaI GACGC 1 cut(s) 586
HhaI GCGC 1 cut(s) 1186
Hin1II CATG 5 cut(s) 174, 430, 700, 1007, 1183
Hin6I GCGC 1 cut(s) 1184
HinP1I GCGC 1 cut(s) 1184
HincII GTYRAC 1 cut(s) 450
HindII GTYRAC 1 cut(s) 450
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 2 cut(s) 175, 1055
HpaI GTTAAC 1 cut(s) 450
HpaII CCGG 3 cut(s) 192, 989, 1232
HphI GGTGA 3 cut(s) 131, 904, 1064
Hpy166II GTNNAC 2 cut(s) 450, 867
Hpy188I TCNGA 1 cut(s) 180
Hpy188III TCNNGA 5 cut(s) 15, 107, 258, 697, 958
Hpy8I GTNNAC 2 cut(s) 450, 867
HpyAV CCTTC 3 cut(s) 133, 1167, 1238
HpyCH4III ACNGT 2 cut(s) 493, 864
HpyCH4IV ACGT 2 cut(s) 446, 704
HpyF10VI GCNNNNNNNGC 5 cut(s) 251, 599, 791, 1004, 1016
HpyF3I CTNAG 4 cut(s) 513, 797, 883, 1144
HpySE526I ACGT 2 cut(s) 446, 704
Hsp92II CATG 5 cut(s) 174, 430, 700, 1007, 1183
HspAI GCGC 1 cut(s) 1184
KspAI GTTAAC 1 cut(s) 450
Kzo9I GATC 3 cut(s) 31, 262, 360
LguI GCTCTTC 1 cut(s) 79
LmnI GCTCC 2 cut(s) 99, 719
Lsp1109I GCAGC 8 cut(s) 175, 229, 257, 738, 769, 982, 994, 997
LweI GCATC 5 cut(s) 263, 461, 653, 769, 1080
MaeI CTAG 4 cut(s) 15, 536, 791, 1118
MaeII ACGT 2 cut(s) 446, 704
MaeIII GTNAC 3 cut(s) 39, 379, 886
MalI GATC 3 cut(s) 33, 264, 362
MboI GATC 3 cut(s) 31, 262, 360
MboII GAAGA 8 cut(s) 66, 75, 156, 189, 257, 731, 847, 911
MflI RGATCY 3 cut(s) 31, 262, 360
MhlI GDGCHC 3 cut(s) 350, 935, 1100
MlsI TGGCCA 1 cut(s) 762
MluCI AATT 5 cut(s) 123, 156, 303, 906, 977
MluNI TGGCCA 1 cut(s) 762
MlyI GAGTC 1 cut(s) 184
MmeI TCCRAC 2 cut(s) 369, 880
MnlI CCTC 5 cut(s) 84, 110, 434, 451, 747
Mox20I TGGCCA 1 cut(s) 762
Mph1103I ATGCAT 1 cut(s) 256
MscI TGGCCA 1 cut(s) 762
MseI TTAA 2 cut(s) 449, 980
MslI CAYNNNNRTG 2 cut(s) 48, 108
Msp20I TGGCCA 1 cut(s) 762
MspI CCGG 3 cut(s) 192, 989, 1232
MspR9I CCNGG 3 cut(s) 554, 633, 989
MvaI CCWGG 2 cut(s) 554, 633
MwoI GCNNNNNNNGC 5 cut(s) 251, 599, 791, 1004, 1016
NciI CCSGG 1 cut(s) 989
NdeII GATC 3 cut(s) 31, 262, 360
NlaIII CATG 5 cut(s) 174, 430, 700, 1007, 1183
NlaIV GGNNCC 2 cut(s) 95, 349
NmeAIII GCCGAG 1 cut(s) 1079
NmuCI GTSAC 1 cut(s) 886
NsiI ATGCAT 1 cut(s) 256
NspI RCATGY 1 cut(s) 1007
OliI CACNNNNGTG 1 cut(s) 48
PagI TCATGA 1 cut(s) 696
PceI AGGCCT 1 cut(s) 1227
PciSI GCTCTTC 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 475
PfeI GAWTC 1 cut(s) 1055
PkrI GCNGC 8 cut(s) 190, 244, 247, 753, 784, 997, 1009, 1012
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
PshBI ATTAAT 1 cut(s) 980
Psp124BI GAGCTC 1 cut(s) 1100
Psp6I CCWGG 2 cut(s) 552, 631
PspGI CCWGG 2 cut(s) 552, 631
PspN4I GGNNCC 2 cut(s) 95, 349
PspPI GGNCC 3 cut(s) 787, 971, 1102
PstI CTGCAG 2 cut(s) 247, 955
PsuI RGATCY 3 cut(s) 31, 262, 360
RsaI GTAC 3 cut(s) 518, 840, 1069
RsaNI GTAC 3 cut(s) 517, 839, 1068
RseI CAYNNNNRTG 2 cut(s) 48, 108
SacI GAGCTC 1 cut(s) 1100
SapI GCTCTTC 1 cut(s) 79
SaqAI TTAA 2 cut(s) 449, 980
SatI GCNGC 8 cut(s) 189, 243, 246, 752, 783, 996, 1008, 1011
Sau3AI GATC 3 cut(s) 31, 262, 360
Sau96I GGNCC 3 cut(s) 787, 971, 1102
ScaI AGTACT 1 cut(s) 840
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 3 cut(s) 554, 633, 989
SduI GDGCHC 3 cut(s) 350, 935, 1100
SfaNI GCATC 5 cut(s) 263, 461, 653, 769, 1080
SfcI CTRYAG 3 cut(s) 61, 243, 951
SinI GGWCC 1 cut(s) 971
SmiMI CAYNNNNRTG 2 cut(s) 48, 108
SmlI CTYRAG 2 cut(s) 35, 134
SmoI CTYRAG 2 cut(s) 35, 134
Sse9I AATT 5 cut(s) 123, 156, 303, 906, 977
SseBI AGGCCT 1 cut(s) 1227
SsiI CCGC 2 cut(s) 785, 974
SspMI CTAG 4 cut(s) 15, 536, 791, 1118
SstI GAGCTC 1 cut(s) 1100
StuI AGGCCT 1 cut(s) 1227
StyD4I CCNGG 3 cut(s) 552, 631, 987
StyI CCWWGG 4 cut(s) 409, 415, 485, 1105
TaaI ACNGT 2 cut(s) 493, 864
TaiI ACGT 2 cut(s) 449, 707
TasI AATT 5 cut(s) 123, 156, 303, 906, 977
TatI WGTACW 2 cut(s) 516, 838
TfiI GAWTC 1 cut(s) 1055
Tru1I TTAA 2 cut(s) 449, 980
Tru9I TTAA 2 cut(s) 449, 980
TscAI CASTG 3 cut(s) 891, 1174, 1201
TseFI GTSAC 1 cut(s) 886
TseI GCWGC 8 cut(s) 188, 242, 245, 751, 782, 995, 1007, 1010
Tsp45I GTSAC 1 cut(s) 886
TspRI CASTG 3 cut(s) 891, 1174, 1201
VpaK11BI GGWCC 1 cut(s) 971
VspI ATTAAT 1 cut(s) 980
XapI RAATTY 1 cut(s) 123
XbaI TCTAGA 1 cut(s) 14
XceI RCATGY 1 cut(s) 1007
XspI CTAG 4 cut(s) 15, 536, 791, 1118
ZrmI AGTACT 1 cut(s) 840
Zsp2I ATGCAT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.