Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003680

Physical Location & Seq

Genomic Coordinates Forward (+)

67706500 .. 67707366

Gene Structure 867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG521500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTTTGGAAACACTTGCAAGAATGTATTTGAAGCTATCGTGTTCATGTTTGTGACACATCCATTTGATGTTGGTGATCGCATTGTTGTTGATGATGTTTCGTTGATGGTTGAAGAGATGAACGTCTTAACTACCACCTTCTTGAAACCAAATAATGAAAAGGTGTACTATCCAAATTCAGTTTTGTGCTCCAAAATCATCAGCAATTATTACAGAAGTCCAGATATGGGAGATACAGTGGAATTCTCAATTATTTTGACACCAGTGGAGAAGATAGACATGCTGAGAAAGAGAATAAAGGAATACTTGGAGAGCAAACCGCAGCATTGGCGTCCAGGCCACAGTGTGGTGGTGATTGATATCGAAGATGTGAATAAGTTAAAGATGGCACTCAATATTTGTCACACTATGAACTTTCAAGAAATTGGTGAAAGGAATAAACGGCGAACCGAGCTAGTCATCGAATTGATGAGAACTTTGGAAGACCTAAACATCACATACAGTCTGCTGCCCCAAGAAGTTCACCTCACTCAAAATAAAGCAGATGCAACCGTTTCCTTCAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

189

Amino Acids

22.02

Weight (kDa)

5.97

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MS_channel_2nd	PF00924	6 - 71	7.2e-12	Mechanosensitive ion channel, beta-domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003680)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08260 FvH4_1g08260 FvH4_1g08260 FvH4_1g08260
malus_domestica	MD02G1086900.v1.1 MD02G1087000.v1.1 MD15G1214500.v1.1 MD15G1214600.v1.1
prunus_persica	Prupe.7G202700_v2.0.a1
pyrus_communis	pycom02g06990 pycom02g07000 pycom15g19040
rosa_chinensis	RchiOBHm_Chr2g0094331
rosa_laevigata	RLG00000016480
rosa_multiflora	Rmu_sc0003819.1_g000016 Rmu_sc0025410.1_g000001 Rmu_sc0025411.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147230 Rroxscaffold_7G00185070
rosa_rugosa	Rorug02G0043300 Rorug02G0043300
rosa_samantha	Rh2AG091000 Rh2AG091100 Rh2BG090900 Rh2CG093400 Rh2CG093500 Rh2DG089900 Rh6AG505100 Rh6BG272500 Rh6CG273600 Rh6CG521500 Rh6CG521800 Rh6DG266600 Rh6DG507600
rosa_wichuraiana	Rw6G043950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	346
AciI	CCGC	1 cut(s)	320
AcsI	RAATTY	2 cut(s)	175, 242
AcyI	GRCGYC	1 cut(s)	331
AdeI	CACNNNGTG	1 cut(s)	346
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	227, 346
AgsI	TTSAA	5 cut(s)	32, 113, 145, 419, 562
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	2 cut(s)	35, 454
AluI	AGCT	2 cut(s)	35, 454
Alw21I	GWGCWC	1 cut(s)	191
AoxI	GGCC	1 cut(s)	337
ApeKI	GCWGC	2 cut(s)	322, 508
ApoI	RAATTY	2 cut(s)	175, 242
AsuHPI	GGTGA	4 cut(s)	86, 364, 440, 515
BbsI	GAAGAC	1 cut(s)	489
Bbv12I	GWGCWC	1 cut(s)	191
BbvI	GCAGC	2 cut(s)	334, 495
BccI	CCATC	2 cut(s)	100, 379
BceAI	ACGGC	1 cut(s)	458
BciT130I	CCWGG	1 cut(s)	336
BfaI	CTAG	1 cut(s)	455
BisI	GCNGC	2 cut(s)	323, 509
BlsI	GCNGC	2 cut(s)	324, 510
Bme1390I	CCNGG	1 cut(s)	336
BmrFI	CCNGG	1 cut(s)	336
BmsI	GCATC	1 cut(s)	535
BpiI	GAAGAC	1 cut(s)	489
BsaBI	GATNNNNATC	1 cut(s)	359
BsaHI	GRCGYC	1 cut(s)	331
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 346
Bse1I	ACTGG	1 cut(s)	263
Bse8I	GATNNNNATC	1 cut(s)	359
BseBI	CCWGG	1 cut(s)	336
BseGI	GGATG	1 cut(s)	58
BseJI	GATNNNNATC	1 cut(s)	359
BseLI	CCNNNNNNNGG	2 cut(s)	227, 346
BseMII	CTCAG	1 cut(s)	275
BseNI	ACTGG	1 cut(s)	263
BseXI	GCAGC	2 cut(s)	334, 495
BshFI	GGCC	1 cut(s)	339
BsiHKAI	GWGCWC	1 cut(s)	191
BslI	CCNNNNNNNGG	2 cut(s)	227, 346
BsnI	GGCC	1 cut(s)	339
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	76
BspACI	CCGC	1 cut(s)	320
BspANI	GGCC	1 cut(s)	339
BspCNI	CTCAG	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	263
BssMI	GATC	1 cut(s)	76
BssNI	GRCGYC	1 cut(s)	331
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	4 cut(s)	238, 344, 503, 553
Bst6I	CTCTTC	1 cut(s)	108
BstACI	GRCGYC	1 cut(s)	331
BstDEI	CTNAG	1 cut(s)	284
BstF5I	GGATG	1 cut(s)	58
BstKTI	GATC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	2 cut(s)	328, 451
BstNI	CCWGG	1 cut(s)	336
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	334
BstV1I	GCAGC	2 cut(s)	334, 495
BstV2I	GAAGAC	1 cut(s)	489
BsuRI	GGCC	1 cut(s)	339
BtsCI	GGATG	1 cut(s)	58
BtsIMutI	CAGTG	3 cut(s)	243, 270, 349
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	2 cut(s)	46, 280
CviJI	RGCY	3 cut(s)	35, 339, 454
CviKI_1	RGCY	3 cut(s)	35, 339, 454
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	1 cut(s)	284
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
DraIII	CACNNNGTG	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco32I	GATATC	1 cut(s)	361
EcoRI	GAATTC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	334
EcoRV	GATATC	1 cut(s)	361
FaeI	CATG	2 cut(s)	49, 283
FaiI	YATR	5 cut(s)	47, 227, 281, 410, 499
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FatI	CATG	2 cut(s)	45, 279
Fnu4HI	GCNGC	2 cut(s)	323, 509
FokI	GGATG	1 cut(s)	45
Fsp4HI	GCNGC	2 cut(s)	323, 509
FspBI	CTAG	1 cut(s)	455
GluI	GCNGC	2 cut(s)	323, 509
HaeIII	GGCC	1 cut(s)	339
HgaI	GACGC	1 cut(s)	320
Hin1I	GRCGYC	1 cut(s)	331
Hin1II	CATG	2 cut(s)	49, 283
HphI	GGTGA	4 cut(s)	86, 364, 440, 515
Hpy166II	GTNNAC	2 cut(s)	166, 523
Hpy188III	TCNNGA	4 cut(s)	142, 221, 419, 562
Hpy8I	GTNNAC	2 cut(s)	166, 523
HpyAV	CCTTC	2 cut(s)	148, 568
HpyCH4III	ACNGT	4 cut(s)	238, 344, 503, 553
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	18, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	328, 451
HpyF3I	CTNAG	1 cut(s)	284
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	331
Hsp92II	CATG	2 cut(s)	49, 283
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	194
LpnPI	CCDG	4 cut(s)	234, 276, 321, 348
Lsp1109I	GCAGC	2 cut(s)	334, 495
LweI	GCATC	1 cut(s)	535
MaeI	CTAG	1 cut(s)	455
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	2 cut(s)	52, 401
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	4 cut(s)	125, 283, 377, 494
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	6 cut(s)	175, 205, 242, 249, 423, 464
MnlI	CCTC	1 cut(s)	536
MseI	TTAA	2 cut(s)	128, 380
MslI	CAYNNNNRTG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	336
MwoI	GCNNNNNNNGC	2 cut(s)	328, 451
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	2 cut(s)	49, 283
NmuCI	GTSAC	2 cut(s)	52, 401
NspI	RCATGY	1 cut(s)	283
PflMI	CCANNNNNTGG	1 cut(s)	346
PkrI	GCNGC	2 cut(s)	324, 510
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	50
SaqAI	TTAA	2 cut(s)	128, 380
SatI	GCNGC	2 cut(s)	323, 509
Sau3AI	GATC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	336
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	7 cut(s)	37, 126, 140, 165, 456, 489, 528
SfaNI	GCATC	1 cut(s)	535
SmiMI	CAYNNNNRTG	1 cut(s)	50
Sse9I	AATT	6 cut(s)	175, 205, 242, 249, 423, 464
SsiI	CCGC	1 cut(s)	320
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	1 cut(s)	455
StyD4I	CCNGG	1 cut(s)	334
TaaI	ACNGT	4 cut(s)	238, 344, 503, 553
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	2 cut(s)	363, 462
TasI	AATT	6 cut(s)	175, 205, 242, 249, 423, 464
TatI	WGTACW	1 cut(s)	165
Tru1I	TTAA	2 cut(s)	128, 380
Tru9I	TTAA	2 cut(s)	128, 380
TscAI	CASTG	3 cut(s)	243, 270, 349
TseFI	GTSAC	2 cut(s)	52, 401
TseI	GCWGC	2 cut(s)	322, 508
Tsp45I	GTSAC	2 cut(s)	52, 401
TspDTI	ATGAA	4 cut(s)	34, 134, 171, 425
TspRI	CASTG	3 cut(s)	243, 270, 349
Van91I	CCANNNNNTGG	1 cut(s)	346
XapI	RAATTY	2 cut(s)	175, 242
XceI	RCATGY	1 cut(s)	283
XspI	CTAG	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.