Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003680

Physical Location & Seq

Genomic Coordinates Forward (+)

44920454 .. 44931386

Gene Structure 10933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG273600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGAAACCCTCACTAGGAGAAGGTCAGAGATTAGCTTACTCTAAACCCAAGTCACGATTTGGTGAACTACCATATCACGCTGATTTGGATATGTTACTTGAAGACACTAGTAGTTTAGATGAGCCGGTTGGTGCAAGTTTTCATAGTAGTTCTTCCGAGTCCCCAGAGATGCTGCCTCCGGAGAGGCCGAAGAATAAGGATAAAAAGCTCTACAAGAAGGCTGAATTGCTGTCTTCGGCCCCGGAGAGGCTGAAGTGTAAGGATAATCCGGAGAGGCTGAAGTGTAAGGATAAAAAGCTCTACAAGAAGGCTAAATTGAATAGAGATAAGCAGTGGAAAGCATTTAACAAGAAGATCTTGATTAAGCCGACTGTTTTTCTGTGCATTTTGTTGATAGTTGAGGAGATGAACATCTTTACTACAGTCTTCTTGAAGTCTAACAATGAGAAGGTATACTATCCGAATTCAGTTTTATCCACAAAAACCATCAGCAATTATTACAGAAGTTCAGATATGAAAGATACTGTGGAGTTCTCGATTGCTTTGACACCTGTGGAGAAGATAGTCAAGCTCAAAGAGAAAATTAAGGAGTATTTGGAGAGGAACCCTCAGTATTGGCATCCAAAGCATAATGTGGCGGTGATCGATTTCGAAGATGTGAACAAGTTAAAGATGGCAGTGTATTTTCATCACATCTTGAACTTTCAAGAATTTGAAGAAAAGAATGTGCGCAGAGCCGAGCTAGTTTTCGAATTGCTGAAAATTCTTGAAGAGCTAAATATCACATACTCTATGCCGCCCCAAGAAGTCCACCTCAAAACTAAATCAGAAGCAATTGCTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

281

Amino Acids

32.8

Weight (kDa)

9.15

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003680)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08260 FvH4_1g08260 FvH4_1g08260 FvH4_1g08260
malus_domestica	MD02G1086900.v1.1 MD02G1087000.v1.1 MD15G1214500.v1.1 MD15G1214600.v1.1
prunus_persica	Prupe.7G202700_v2.0.a1
pyrus_communis	pycom02g06990 pycom02g07000 pycom15g19040
rosa_chinensis	RchiOBHm_Chr2g0094331
rosa_laevigata	RLG00000016480
rosa_multiflora	Rmu_sc0003819.1_g000016 Rmu_sc0025410.1_g000001 Rmu_sc0025411.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147230 Rroxscaffold_7G00185070
rosa_rugosa	Rorug02G0043300 Rorug02G0043300
rosa_samantha	Rh2AG091000 Rh2AG091100 Rh2BG090900 Rh2CG093400 Rh2CG093500 Rh2DG089900 Rh6AG505100 Rh6BG272500 Rh6CG273600 Rh6CG521500 Rh6CG521800 Rh6DG266600 Rh6DG507600
rosa_wichuraiana	Rw6G043950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	731
AccI	GTMKAC	1 cut(s)	453
AccIII	TCCGGA	2 cut(s)	178, 268
AciI	CCGC	2 cut(s)	638, 797
AcsI	RAATTY	3 cut(s)	463, 710, 762
AcuI	CTGAAG	2 cut(s)	272, 299
AfiI	CCNNNNNNNGG	2 cut(s)	14, 246
AgsI	TTSAA	7 cut(s)	101, 319, 433, 700, 707, 716, 770
AhlI	ACTAGT	1 cut(s)	107
AluBI	AGCT	6 cut(s)	35, 208, 298, 571, 742, 775
AluI	AGCT	6 cut(s)	35, 208, 298, 571, 742, 775
Aor13HI	TCCGGA	2 cut(s)	178, 268
AoxI	GGCC	2 cut(s)	185, 237
ApeKI	GCWGC	2 cut(s)	172, 839
ApoI	RAATTY	3 cut(s)	463, 710, 762
AspLEI	GCGC	1 cut(s)	732
AspS9I	GGNCC	1 cut(s)	238
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	74, 652
AsuII	TTCGAA	2 cut(s)	651, 750
BbsI	GAAGAC	3 cut(s)	108, 225, 418
BbvI	GCAGC	2 cut(s)	159, 826
BccI	CCATC	2 cut(s)	494, 667
BcnI	CCSGG	1 cut(s)	242
BcuI	ACTAGT	1 cut(s)	107
BfaI	CTAG	3 cut(s)	14, 108, 743
BfmI	CTRYAG	1 cut(s)	420
BglII	AGATCT	1 cut(s)	354
BisI	GCNGC	3 cut(s)	173, 797, 840
BlsI	GCNGC	3 cut(s)	174, 798, 841
Bme1390I	CCNGG	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	2 cut(s)	240, 605
BmrFI	CCNGG	1 cut(s)	242
BmsI	GCATC	2 cut(s)	159, 628
BpiI	GAAGAC	3 cut(s)	108, 225, 418
BplI	GAGNNNNNCTC	2 cut(s)	592, 624
Bpu14I	TTCGAA	2 cut(s)	651, 750
BpuMI	CCSGG	1 cut(s)	242
Bsa29I	ATCGAT	1 cut(s)	645
BsaBI	GATNNNNATC	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	240
BsaWI	WCCGGW	2 cut(s)	178, 268
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 246
Bse118I	RCCGGY	1 cut(s)	124
Bse8I	GATNNNNATC	1 cut(s)	410
BseAI	TCCGGA	2 cut(s)	178, 268
BseCI	ATCGAT	1 cut(s)	645
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	1 cut(s)	619
BseJI	GATNNNNATC	1 cut(s)	410
BseLI	CCNNNNNNNGG	2 cut(s)	14, 246
BseMII	CTCAG	1 cut(s)	623
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	2 cut(s)	159, 826
BshFI	GGCC	2 cut(s)	187, 239
BshVI	ATCGAT	1 cut(s)	645
BsiSI	CCGG	4 cut(s)	125, 179, 242, 269
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	2 cut(s)	14, 246
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	2 cut(s)	187, 239
Bsp119I	TTCGAA	2 cut(s)	651, 750
Bsp13I	TCCGGA	2 cut(s)	178, 268
Bsp143I	GATC	2 cut(s)	354, 642
BspACI	CCGC	2 cut(s)	638, 797
BspANI	GGCC	2 cut(s)	187, 239
BspCNI	CTCAG	1 cut(s)	622
BspDI	ATCGAT	1 cut(s)	645
BspEI	TCCGGA	2 cut(s)	178, 268
BspLI	GGNNCC	2 cut(s)	240, 605
BspQI	GCTCTTC	1 cut(s)	765
BspT104I	TTCGAA	2 cut(s)	651, 750
BsrFI	RCCGGY	1 cut(s)	124
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	2 cut(s)	354, 642
BssNAI	GTATAC	1 cut(s)	454
Bst1107I	GTATAC	1 cut(s)	454
Bst4CI	ACNGT	3 cut(s)	373, 424, 526
Bst6I	CTCTTC	1 cut(s)	765
BstAPI	GCANNNNNTGC	1 cut(s)	839
BstBI	TTCGAA	2 cut(s)	651, 750
BstDEI	CTNAG	1 cut(s)	609
BstF5I	GGATG	1 cut(s)	619
BstHHI	GCGC	1 cut(s)	732
BstKTI	GATC	2 cut(s)	357, 645
BstMBI	GATC	2 cut(s)	354, 642
BstMWI	GCNNNNNNNGC	2 cut(s)	625, 839
BstSCI	CCNGG	1 cut(s)	240
BstSFI	CTRYAG	1 cut(s)	420
BstV1I	GCAGC	2 cut(s)	159, 826
BstV2I	GAAGAC	3 cut(s)	108, 225, 418
BstX2I	RGATCY	1 cut(s)	354
BstYI	RGATCY	1 cut(s)	354
BstZ17I	GTATAC	1 cut(s)	454
Bsu15I	ATCGAT	1 cut(s)	645
BsuRI	GGCC	2 cut(s)	187, 239
BsuTUI	ATCGAT	1 cut(s)	645
BtsCI	GGATG	1 cut(s)	619
BtsI	GCAGTG	2 cut(s)	338, 684
BtsIMutI	CAGTG	2 cut(s)	338, 684
CfoI	GCGC	1 cut(s)	732
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	238
ClaI	ATCGAT	1 cut(s)	645
DdeI	CTNAG	1 cut(s)	609
DpnI	GATC	2 cut(s)	356, 644
DpnII	GATC	2 cut(s)	354, 642
Eam1104I	CTCTTC	1 cut(s)	765
EarI	CTCTTC	1 cut(s)	765
Eco57I	CTGAAG	2 cut(s)	272, 299
EcoRI	GAATTC	1 cut(s)	463
FaiI	YATR	8 cut(s)	73, 92, 144, 454, 515, 630, 787, 794
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FaqI	GGGAC	1 cut(s)	145
FblI	GTMKAC	1 cut(s)	453
Fnu4HI	GCNGC	3 cut(s)	173, 797, 840
FokI	GGATG	1 cut(s)	606
Fsp4HI	GCNGC	3 cut(s)	173, 797, 840
FspBI	CTAG	3 cut(s)	14, 108, 743
FspI	TGCGCA	1 cut(s)	731
GlaI	GCGC	1 cut(s)	731
GluI	GCNGC	3 cut(s)	173, 797, 840
HaeIII	GGCC	2 cut(s)	187, 239
HapII	CCGG	4 cut(s)	125, 179, 242, 269
HhaI	GCGC	1 cut(s)	732
Hin6I	GCGC	1 cut(s)	730
HinP1I	GCGC	1 cut(s)	730
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	4 cut(s)	125, 179, 242, 269
HphI	GGTGA	2 cut(s)	74, 652
Hpy166II	GTNNAC	4 cut(s)	65, 454, 661, 811
Hpy188I	TCNGA	5 cut(s)	27, 157, 462, 511, 829
Hpy188III	TCNNGA	9 cut(s)	54, 179, 269, 358, 430, 535, 697, 707, 767
Hpy8I	GTNNAC	4 cut(s)	65, 454, 661, 811
HpyAV	CCTTC	4 cut(s)	14, 211, 301, 442
HpyCH4III	ACNGT	3 cut(s)	373, 424, 526
HpyCH4V	TGCA	2 cut(s)	134, 384
HpyF10VI	GCNNNNNNNGC	2 cut(s)	625, 839
HpyF3I	CTNAG	1 cut(s)	609
HspAI	GCGC	1 cut(s)	730
Kpn2I	TCCGGA	2 cut(s)	178, 268
Kzo9I	GATC	2 cut(s)	354, 642
LguI	GCTCTTC	1 cut(s)	765
LpnPI	CCDG	6 cut(s)	138, 177, 192, 255, 282, 564
Lsp1109I	GCAGC	2 cut(s)	159, 826
LweI	GCATC	2 cut(s)	159, 628
MaeI	CTAG	3 cut(s)	14, 108, 743
MaeIII	GTNAC	2 cut(s)	51, 93
MalI	GATC	2 cut(s)	356, 644
MboI	GATC	2 cut(s)	354, 642
MfeI	CAATTG	1 cut(s)	834
MflI	RGATCY	1 cut(s)	354
MluCI	AATT	9 cut(s)	224, 314, 463, 493, 582, 710, 752, 762, 834
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	9 cut(s)	19, 177, 186, 240, 267, 394, 594, 618, 824
MroI	TCCGGA	2 cut(s)	178, 268
MseI	TTAA	4 cut(s)	345, 363, 585, 668
MspI	CCGG	4 cut(s)	125, 179, 242, 269
MspR9I	CCNGG	1 cut(s)	242
MunI	CAATTG	1 cut(s)	834
MwoI	GCNNNNNNNGC	2 cut(s)	625, 839
NciI	CCSGG	1 cut(s)	242
NdeII	GATC	2 cut(s)	354, 642
NlaIV	GGNNCC	2 cut(s)	240, 605
NmeAIII	GCCGAG	1 cut(s)	763
NmuCI	GTSAC	1 cut(s)	51
NsbI	TGCGCA	1 cut(s)	731
NspV	TTCGAA	2 cut(s)	651, 750
PciSI	GCTCTTC	1 cut(s)	765
PkrI	GCNGC	3 cut(s)	174, 798, 841
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
PspN4I	GGNNCC	2 cut(s)	240, 605
PspPI	GGNCC	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	354
SapI	GCTCTTC	1 cut(s)	765
SaqAI	TTAA	4 cut(s)	345, 363, 585, 668
SatI	GCNGC	3 cut(s)	173, 797, 840
Sau3AI	GATC	2 cut(s)	354, 642
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	242
SfaNI	GCATC	2 cut(s)	159, 628
SfcI	CTRYAG	1 cut(s)	420
SfuI	TTCGAA	2 cut(s)	651, 750
SpeI	ACTAGT	1 cut(s)	107
Sse9I	AATT	9 cut(s)	224, 314, 463, 493, 582, 710, 752, 762, 834
SsiI	CCGC	2 cut(s)	638, 797
SspMI	CTAG	3 cut(s)	14, 108, 743
StyD4I	CCNGG	1 cut(s)	240
TaaI	ACNGT	3 cut(s)	373, 424, 526
TaqI	TCGA	4 cut(s)	536, 645, 651, 750
TasI	AATT	9 cut(s)	224, 314, 463, 493, 582, 710, 752, 762, 834
TauI	GCSGC	1 cut(s)	799
Tru1I	TTAA	4 cut(s)	345, 363, 585, 668
Tru9I	TTAA	4 cut(s)	345, 363, 585, 668
TscAI	CASTG	2 cut(s)	338, 684
TseFI	GTSAC	1 cut(s)	51
TseI	GCWGC	2 cut(s)	172, 839
Tsp45I	GTSAC	1 cut(s)	51
TspDTI	ATGAA	5 cut(s)	17, 131, 422, 530, 677
TspRI	CASTG	2 cut(s)	338, 684
XapI	RAATTY	3 cut(s)	463, 710, 762
XmiI	GTMKAC	1 cut(s)	453
XspI	CTAG	3 cut(s)	14, 108, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.