Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003680

Physical Location & Seq

Genomic Coordinates Forward (+)

67079866 .. 67080328

Gene Structure 463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G043950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGAGAGATGCTTTAGAGTTCTCAATTGCTATAACACCAGTGGAGAAGATAGTCAAGTTGAAAGAGAAAATAAAGGAATACATCGAGGGGAAGCCTCAATATTGGCATCGAAAACACAATGTGGTGGTGGTGAACATCGAAGATGTTAAGTTAAATATGGCCGTGTATTGTCATCATAAAATGAACTATAAAGATTTTGAGGAAAAGAATTTGCGCAGAGCTGAGCTAAACTTCGAATTGCTGAAAATTCTTGAAGAGCTAAACATCACAGTAATATCTGCTGTCCTCCCAAAAAGTGAATCTCACTCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

104

Amino Acids

12.32

Weight (kDa)

7.86

Isoelectric Point (pI)

52.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0003680)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08260 FvH4_1g08260 FvH4_1g08260 FvH4_1g08260
malus_domestica	MD02G1086900.v1.1 MD02G1087000.v1.1 MD15G1214500.v1.1 MD15G1214600.v1.1
prunus_persica	Prupe.7G202700_v2.0.a1
pyrus_communis	pycom02g06990 pycom02g07000 pycom15g19040
rosa_chinensis	RchiOBHm_Chr2g0094331
rosa_laevigata	RLG00000016480
rosa_multiflora	Rmu_sc0003819.1_g000016 Rmu_sc0025410.1_g000001 Rmu_sc0025411.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147230 Rroxscaffold_7G00185070
rosa_rugosa	Rorug02G0043300 Rorug02G0043300
rosa_samantha	Rh2AG091000 Rh2AG091100 Rh2BG090900 Rh2CG093400 Rh2CG093500 Rh2DG089900 Rh6AG505100 Rh6BG272500 Rh6CG273600 Rh6CG521500 Rh6CG521800 Rh6DG266600 Rh6DG507600
rosa_wichuraiana	Rw6G043950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	215
AcoI	YGGCCR	1 cut(s)	159
AcsI	RAATTY	2 cut(s)	208, 246
AdeI	CACNNNGTG	1 cut(s)	121
AgsI	TTSAA	2 cut(s)	61, 254
AluBI	AGCT	3 cut(s)	221, 226, 259
AluI	AGCT	3 cut(s)	221, 226, 259
AoxI	GGCC	1 cut(s)	159
ApoI	RAATTY	2 cut(s)	208, 246
AspLEI	GCGC	1 cut(s)	216
AsuHPI	GGTGA	1 cut(s)	142
AsuII	TTCGAA	1 cut(s)	234
BceAI	ACGGC	1 cut(s)	146
BlpI	GCTNAGC	1 cut(s)	222
BmsI	GCATC	1 cut(s)	115
Bpu1102I	GCTNAGC	1 cut(s)	222
Bpu14I	TTCGAA	1 cut(s)	234
Bse1I	ACTGG	1 cut(s)	38
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	38
BshFI	GGCC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	161
Bsp119I	TTCGAA	1 cut(s)	234
Bsp1720I	GCTNAGC	1 cut(s)	222
BspANI	GGCC	1 cut(s)	161
BspCNI	CTCAG	1 cut(s)	214
BspQI	GCTCTTC	1 cut(s)	249
BspT104I	TTCGAA	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	249
BstBI	TTCGAA	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	161
BtsIMutI	CAGTG	1 cut(s)	45
CfoI	GCGC	1 cut(s)	216
CviJI	RGCY	5 cut(s)	94, 161, 221, 226, 259
CviKI_1	RGCY	5 cut(s)	94, 161, 221, 226, 259
DdeI	CTNAG	1 cut(s)	222
DraIII	CACNNNGTG	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
FaiI	YATR	4 cut(s)	32, 158, 177, 189
FspI	TGCGCA	1 cut(s)	215
GlaI	GCGC	1 cut(s)	215
HaeIII	GGCC	1 cut(s)	161
HhaI	GCGC	1 cut(s)	216
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HinfI	GANTC	1 cut(s)	299
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188III	TCNNGA	1 cut(s)	251
Hpy8I	GTNNAC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	271
HpyF3I	CTNAG	1 cut(s)	222
HspAI	GCGC	1 cut(s)	214
LguI	GCTCTTC	1 cut(s)	249
LpnPI	CCDG	1 cut(s)	51
LweI	GCATC	1 cut(s)	115
MboII	GAAGA	3 cut(s)	58, 152, 266
MfeI	CAATTG	1 cut(s)	24
MluCI	AATT	4 cut(s)	24, 208, 236, 246
MnlI	CCTC	4 cut(s)	79, 105, 193, 296
MseI	TTAA	2 cut(s)	147, 152
MunI	CAATTG	1 cut(s)	24
NsbI	TGCGCA	1 cut(s)	215
NspV	TTCGAA	1 cut(s)	234
PciSI	GCTCTTC	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	299
SapI	GCTCTTC	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	147, 152
SetI	ASST	3 cut(s)	223, 228, 261
SfaNI	GCATC	1 cut(s)	115
SfuI	TTCGAA	1 cut(s)	234
SgeI	CNNG	5 cut(s)	50, 67, 97, 175, 263
Sse9I	AATT	4 cut(s)	24, 208, 236, 246
SspI	AATATT	1 cut(s)	101
TaaI	ACNGT	1 cut(s)	271
TaqI	TCGA	4 cut(s)	84, 109, 138, 234
TasI	AATT	4 cut(s)	24, 208, 236, 246
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	2 cut(s)	147, 152
Tru9I	TTAA	2 cut(s)	147, 152
TscAI	CASTG	1 cut(s)	45
TspDTI	ATGAA	1 cut(s)	197
TspRI	CASTG	1 cut(s)	45
XapI	RAATTY	2 cut(s)	208, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.