Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003680

Physical Location & Seq

Genomic Coordinates Forward (+)

67726680 .. 67727455

Gene Structure 776 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG521800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCATCCATTTGACGTTGGTGATCGCTGTGTTGTTGAGGGCGTGGAGTTGATGGTTGAGGAGATGAACATCTTAACCACAGTCTTCCTGAAACTCAATCAAGAGAAGGTATACTATCCAAATTCAGTTTTATCAAAGAAACCCATCAGCAATTATTACAGAAGCTCAAATATGGGCGATATTGTGGAGTTCTCAATTGCTTTTACTACACCAGTGGAGAAAATAGGTCTGCTGAAAGAGAAAGTAAAGCAGTATGTGGAGGAGAACTCAACACTTTGGCATCCAAACCATGCTGTGGTGGTGCTTGAGATCGAAAATATGAATAAGCTAAAGATGGCACTCTATTTTTGTCACACTGCTATGAACTTTCAAGAATGGGTTGAAAAACAAAAGCGCAGAACTGAAATGGTCATCGCACTGAAGAATTGTTTTGATGAGCTACAGATTACATATTATCTACTGCCCCTTGAAGTTCGTCTCACTGAAACAAATGTCACCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

168

Amino Acids

19.73

Weight (kDa)

6.11

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MS_channel_2nd	PF00924	2 - 53	2.4e-08	Mechanosensitive ion channel, beta-domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003680)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08260 FvH4_1g08260 FvH4_1g08260 FvH4_1g08260
malus_domestica	MD02G1086900.v1.1 MD02G1087000.v1.1 MD15G1214500.v1.1 MD15G1214600.v1.1
prunus_persica	Prupe.7G202700_v2.0.a1
pyrus_communis	pycom02g06990 pycom02g07000 pycom15g19040
rosa_chinensis	RchiOBHm_Chr2g0094331
rosa_laevigata	RLG00000016480
rosa_multiflora	Rmu_sc0003819.1_g000016 Rmu_sc0025410.1_g000001 Rmu_sc0025411.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147230 Rroxscaffold_7G00185070
rosa_rugosa	Rorug02G0043300 Rorug02G0043300
rosa_samantha	Rh2AG091000 Rh2AG091100 Rh2BG090900 Rh2CG093400 Rh2CG093500 Rh2DG089900 Rh6AG505100 Rh6BG272500 Rh6CG273600 Rh6CG521500 Rh6CG521800 Rh6DG266600 Rh6DG507600
rosa_wichuraiana	Rw6G043950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	295
AccI	GTMKAC	1 cut(s)	111
AcsI	RAATTY	1 cut(s)	121
AcuI	CTGAAG	1 cut(s)	440
AfiI	CCNNNNNNNGG	1 cut(s)	295
AgsI	TTSAA	3 cut(s)	371, 383, 470
AluBI	AGCT	3 cut(s)	165, 328, 439
AluI	AGCT	3 cut(s)	165, 328, 439
Alw26I	GTCTC	1 cut(s)	482
ApoI	RAATTY	1 cut(s)	121
AspLEI	GCGC	1 cut(s)	396
AsuHPI	GGTGA	2 cut(s)	32, 487
BbsI	GAAGAC	1 cut(s)	76
BccI	CCATC	3 cut(s)	46, 152, 328
BcoDI	GTCTC	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	440
BmsI	GCATC	2 cut(s)	13, 289
BpiI	GAAGAC	1 cut(s)	76
BplI	GAGNNNNNCTC	2 cut(s)	251, 283
BpuEI	CTTGAG	1 cut(s)	326
BsaBI	GATNNNNATC	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse1I	ACTGG	1 cut(s)	212
Bse8I	GATNNNNATC	1 cut(s)	68
BseGI	GGATG	2 cut(s)	4, 280
BseJI	GATNNNNATC	1 cut(s)	68
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseNI	ACTGG	1 cut(s)	212
BseRI	GAGGAG	2 cut(s)	74, 275
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	1 cut(s)	482
BsmBI	CGTCTC	1 cut(s)	482
Bsp143I	GATC	2 cut(s)	22, 309
BsrI	ACTGG	1 cut(s)	212
BssMI	GATC	2 cut(s)	22, 309
BssNAI	GTATAC	1 cut(s)	112
Bst1107I	GTATAC	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	82
BstF5I	GGATG	2 cut(s)	4, 280
BstHHI	GCGC	1 cut(s)	396
BstKTI	GATC	2 cut(s)	25, 312
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	2 cut(s)	22, 309
BstSFI	CTRYAG	1 cut(s)	440
BstV2I	GAAGAC	1 cut(s)	76
BstZ17I	GTATAC	1 cut(s)	112
BtgZI	GCGATG	1 cut(s)	397
BtsCI	GGATG	2 cut(s)	4, 280
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	4 cut(s)	219, 354, 416, 480
CfoI	GCGC	1 cut(s)	396
CviAII	CATG	1 cut(s)	290
CviJI	RGCY	3 cut(s)	165, 328, 439
CviKI_1	RGCY	3 cut(s)	165, 328, 439
DpnI	GATC	2 cut(s)	24, 311
DpnII	GATC	2 cut(s)	22, 309
Eco57I	CTGAAG	1 cut(s)	440
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	482
FaeI	CATG	1 cut(s)	293
FaiI	YATR	7 cut(s)	112, 173, 255, 291, 320, 362, 451
FatI	CATG	1 cut(s)	289
FblI	GTMKAC	1 cut(s)	111
FokI	GGATG	1 cut(s)	267
GlaI	GCGC	1 cut(s)	395
HhaI	GCGC	1 cut(s)	396
Hin1II	CATG	1 cut(s)	293
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HphI	GGTGA	2 cut(s)	32, 487
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188III	TCNNGA	3 cut(s)	88, 101, 371
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	1 cut(s)	4
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	293
HspAI	GCGC	1 cut(s)	394
Kzo9I	GATC	2 cut(s)	22, 309
LpnPI	CCDG	2 cut(s)	101, 225
LweI	GCATC	2 cut(s)	13, 289
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	2 cut(s)	350, 493
MalI	GATC	2 cut(s)	24, 311
MboI	GATC	2 cut(s)	22, 309
MboII	GAAGA	2 cut(s)	76, 433
MfeI	CAATTG	1 cut(s)	195
MluCI	AATT	4 cut(s)	121, 151, 195, 424
MnlI	CCTC	3 cut(s)	31, 52, 253
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	74
MslI	CAYNNNNRTG	1 cut(s)	359
MunI	CAATTG	1 cut(s)	195
NdeII	GATC	2 cut(s)	22, 309
NlaIII	CATG	1 cut(s)	293
NmuCI	GTSAC	2 cut(s)	350, 493
NsiI	ATGCAT	1 cut(s)	6
PflMI	CCANNNNNTGG	1 cut(s)	295
RseI	CAYNNNNRTG	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	74
Sau3AI	GATC	2 cut(s)	22, 309
SetI	ASST	6 cut(s)	18, 111, 167, 229, 330, 441
SfaNI	GCATC	2 cut(s)	13, 289
SfcI	CTRYAG	1 cut(s)	440
SgeI	CNNG	8 cut(s)	55, 100, 113, 224, 302, 317, 383, 479
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	4 cut(s)	121, 151, 195, 424
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	1 cut(s)	312
TasI	AATT	4 cut(s)	121, 151, 195, 424
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TscAI	CASTG	4 cut(s)	219, 361, 423, 487
TseFI	GTSAC	2 cut(s)	350, 493
Tsp45I	GTSAC	2 cut(s)	350, 493
TspDTI	ATGAA	3 cut(s)	80, 335, 377
TspRI	CASTG	4 cut(s)	219, 361, 423, 487
Van91I	CCANNNNNTGG	1 cut(s)	295
XapI	RAATTY	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	111
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.