Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025411.1

Orthogroup ID

OG0003680

Physical Location & Seq

Genomic Coordinates Reverse (-)

783 .. 1997

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025411.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgcacccatttgatgtaggggaccgttgtgttgttgatggagtacagttgattgttgaagagatgaacatattgacaacgatcttcttgaaacctgacaatgagaagatatactatccaaattcagtactggctactaaacccatcagcaacttttataggagcccggagatgggtgatgctgttgagttcgctgttgatgtttctacaacaattgacactattgcgagcatgaaagccagaataaaaacgtacttggagagcaagcctcagcactggcgtcctgcccatagtgtggcggtgaaggaaattgaagacgtaaacaagatgacaatggctctttatatttctcatactataaatttccagaactatggagacaaaaccagccgccgaacagacctaatcttagagctgaagaaaatatttgaagagcttaatataaaatatcacctcctgcctcaggagatttatctcaccaaagttgggtcagcaactacagagcttccaccctcatggcgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel PsbX

Protein Analysis

174

Amino Acids

20.01

Weight (kDa)

5.96

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003680)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08260 FvH4_1g08260 FvH4_1g08260 FvH4_1g08260
malus_domestica	MD02G1086900.v1.1 MD02G1087000.v1.1 MD15G1214500.v1.1 MD15G1214600.v1.1
prunus_persica	Prupe.7G202700_v2.0.a1
pyrus_communis	pycom02g06990 pycom02g07000 pycom15g19040
rosa_chinensis	RchiOBHm_Chr2g0094331
rosa_laevigata	RLG00000016480
rosa_multiflora	Rmu_sc0003819.1_g000016 Rmu_sc0025410.1_g000001 Rmu_sc0025411.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147230 Rroxscaffold_7G00185070
rosa_rugosa	Rorug02G0043300 Rorug02G0043300
rosa_samantha	Rh2AG091000 Rh2AG091100 Rh2BG090900 Rh2CG093400 Rh2CG093500 Rh2DG089900 Rh6AG505100 Rh6BG272500 Rh6CG273600 Rh6CG521500 Rh6CG521800 Rh6DG266600 Rh6DG507600
rosa_wichuraiana	Rw6G043950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	295
AciI	CCGC	2 cut(s)	299, 391
AcsI	RAATTY	2 cut(s)	121, 361
AcuI	CTGAAG	1 cut(s)	437
AcyI	GRCGYC	1 cut(s)	280
AfaI	GTAC	3 cut(s)	45, 129, 254
AfiI	CCNNNNNNNGG	5 cut(s)	172, 173, 295, 463, 486
AgsI	TTSAA	4 cut(s)	59, 91, 314, 431
AluBI	AGCT	3 cut(s)	415, 436, 505
AluI	AGCT	3 cut(s)	415, 436, 505
Alw26I	GTCTC	1 cut(s)	372
ApoI	RAATTY	2 cut(s)	121, 361
AspLEI	GCGC	1 cut(s)	522
AspS9I	GGNCC	1 cut(s)	22
AsuC2I	CCSGG	1 cut(s)	167
AsuHPI	GGTGA	4 cut(s)	188, 313, 443, 469
AvaII	GGWCC	1 cut(s)	22
AxyI	CCTNAGG	1 cut(s)	462
BanII	GRGCYC	1 cut(s)	167
BbsI	GAAGAC	1 cut(s)	321
BbvCI	CCTCAGC	1 cut(s)	270
BccI	CCATC	3 cut(s)	32, 152, 166
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	372
BfmI	CTRYAG	1 cut(s)	498
BfoI	RGCGCY	1 cut(s)	523
BisI	GCNGC	1 cut(s)	391
BlsI	GCNGC	1 cut(s)	392
BmcAI	AGTACT	1 cut(s)	129
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	22
BmiI	GGNNCC	2 cut(s)	23, 164
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	169
BpiI	GAAGAC	1 cut(s)	321
BplI	GAGNNNNNCTC	2 cut(s)	253, 285
Bpu10I	CCTNAGC	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	5 cut(s)	172, 173, 295, 463, 486
Bse1I	ACTGG	2 cut(s)	135, 281
Bse21I	CCTNAGG	1 cut(s)	462
BseLI	CCNNNNNNNGG	5 cut(s)	172, 173, 295, 463, 486
BseMII	CTCAG	2 cut(s)	284, 476
BseNI	ACTGG	2 cut(s)	135, 281
BsiSI	CCGG	1 cut(s)	167
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	5 cut(s)	172, 173, 295, 463, 486
BsmAI	GTCTC	1 cut(s)	372
BsmFI	GGGAC	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	81
BspACI	CCGC	2 cut(s)	299, 391
BspCNI	CTCAG	2 cut(s)	283, 475
BspLI	GGNNCC	2 cut(s)	23, 164
BspQI	GCTCTTC	1 cut(s)	426
BsrI	ACTGG	2 cut(s)	135, 281
BssMI	GATC	1 cut(s)	81
BssNI	GRCGYC	1 cut(s)	280
Bst4CI	ACNGT	2 cut(s)	26, 48
Bst6I	CTCTTC	2 cut(s)	54, 426
BstACI	GRCGYC	1 cut(s)	280
BstC8I	GCNNGC	2 cut(s)	229, 266
BstDEI	CTNAG	3 cut(s)	270, 409, 462
BstENI	CCTNNNNNAGG	1 cut(s)	461
BstH2I	RGCGCY	1 cut(s)	523
BstHHI	GCGC	1 cut(s)	522
BstKTI	GATC	1 cut(s)	84
BstMAI	GTCTC	1 cut(s)	372
BstMBI	GATC	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	165
BstSFI	CTRYAG	1 cut(s)	498
BstV2I	GAAGAC	1 cut(s)	321
BstXI	CCANNNNNNTGG	2 cut(s)	374, 516
Bsu36I	CCTNAGG	1 cut(s)	462
BtsIMutI	CAGTG	1 cut(s)	274
Cac8I	GCNNGC	2 cut(s)	229, 266
CfoI	GCGC	1 cut(s)	522
Cfr13I	GGNCC	1 cut(s)	22
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	3 cut(s)	44, 128, 253
CviAII	CATG	2 cut(s)	232, 516
CviJI	RGCY	9 cut(s)	134, 165, 239, 268, 338, 390, 415, 436, 505
CviKI_1	RGCY	9 cut(s)	134, 165, 239, 268, 338, 390, 415, 436, 505
CviQI	GTAC	3 cut(s)	44, 128, 253
DdeI	CTNAG	3 cut(s)	270, 409, 462
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	54, 426
EarI	CTCTTC	2 cut(s)	54, 426
Eco24I	GRGCYC	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	22
Eco57I	CTGAAG	1 cut(s)	437
Eco81I	CCTNAGG	1 cut(s)	462
EcoNI	CCTNNNNNAGG	1 cut(s)	461
EcoT38I	GRGCYC	1 cut(s)	167
FaeI	CATG	2 cut(s)	235, 519
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	2 cut(s)	231, 515
Fnu4HI	GCNGC	1 cut(s)	391
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	1 cut(s)	391
GlaI	GCGC	1 cut(s)	521
GluI	GCNGC	1 cut(s)	391
HaeII	RGCGCY	1 cut(s)	523
HapII	CCGG	1 cut(s)	167
HgaI	GACGC	1 cut(s)	269
HhaI	GCGC	1 cut(s)	522
Hin1I	GRCGYC	1 cut(s)	280
Hin1II	CATG	2 cut(s)	235, 519
Hin6I	GCGC	1 cut(s)	520
HinP1I	GCGC	1 cut(s)	520
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	4 cut(s)	188, 313, 443, 469
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188III	TCNNGA	3 cut(s)	88, 367, 464
Hpy8I	GTNNAC	1 cut(s)	322
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	2 cut(s)	26, 48
HpyCH4IV	ACGT	2 cut(s)	251, 318
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	3 cut(s)	270, 409, 462
HpySE526I	ACGT	2 cut(s)	251, 318
Hsp92I	GRCGYC	1 cut(s)	280
Hsp92II	CATG	2 cut(s)	235, 519
HspAI	GCGC	1 cut(s)	520
Kzo9I	GATC	1 cut(s)	81
LguI	GCTCTTC	1 cut(s)	426
LmnI	GCTCC	1 cut(s)	162
LweI	GCATC	1 cut(s)	169
MaeII	ACGT	2 cut(s)	251, 318
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	6 cut(s)	71, 76, 118, 326, 430, 443
MfeI	CAATTG	1 cut(s)	213
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	4 cut(s)	121, 213, 309, 361
MnlI	CCTC	4 cut(s)	279, 464, 471, 523
MseI	TTAA	1 cut(s)	438
MslI	CAYNNNNRTG	1 cut(s)	514
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	167
MunI	CAATTG	1 cut(s)	213
NciI	CCSGG	1 cut(s)	167
NdeII	GATC	1 cut(s)	81
NlaIII	CATG	2 cut(s)	235, 519
NlaIV	GGNNCC	2 cut(s)	23, 164
PciSI	GCTCTTC	1 cut(s)	426
PflMI	CCANNNNNTGG	1 cut(s)	295
PkrI	GCNGC	1 cut(s)	392
PspN4I	GGNNCC	2 cut(s)	23, 164
PspPI	GGNCC	1 cut(s)	22
RsaI	GTAC	3 cut(s)	45, 129, 254
RsaNI	GTAC	3 cut(s)	44, 128, 253
RseI	CAYNNNNRTG	1 cut(s)	514
SapI	GCTCTTC	1 cut(s)	426
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	1 cut(s)	391
Sau3AI	GATC	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	22
ScaI	AGTACT	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	8 cut(s)	97, 254, 321, 405, 417, 438, 456, 507
SfaNI	GCATC	1 cut(s)	169
SfcI	CTRYAG	1 cut(s)	498
SinI	GGWCC	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	514
Sse9I	AATT	4 cut(s)	121, 213, 309, 361
SsiI	CCGC	2 cut(s)	299, 391
SspI	AATATT	1 cut(s)	426
StyD4I	CCNGG	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	26, 48
TaiI	ACGT	2 cut(s)	254, 321
TasI	AATT	4 cut(s)	121, 213, 309, 361
TatI	WGTACW	2 cut(s)	43, 127
TauI	GCSGC	1 cut(s)	393
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	1 cut(s)	281
TspDTI	ATGAA	2 cut(s)	80, 248
TspRI	CASTG	1 cut(s)	281
Van91I	CCANNNNNTGG	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	22
XagI	CCTNNNNNAGG	1 cut(s)	461
XapI	RAATTY	2 cut(s)	121, 361
ZrmI	AGTACT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.