Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003680

Physical Location & Seq

Genomic Coordinates Forward (+)

67746085 .. 67746606

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG505100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGGCGATATTGTGGAGTTCTCAATTGCTTTTACTACACCAGTGGAGAAAATAGGTCTGCTGAAAGAGAAAGTAAAGCAGTATGTGGAGGGGAACTCAACACTTTGGCATCCAAACCATGCTGTGGTGGTGCTTGAGATCGAAAATATGAATAAGCTAAAGATGGCACTCTATTTTTGTCACACTATGAACTTTCAAGAATGGGTTGAAAAACAAAAGCGCAGAACTGAAATGGTCATCGCACTGAAGAATTGTTTTGATGAGCTACAGATTACATATTATCTACTGCCCCTTGAAGTTCGTCTCACTGAAACAAATGTCACCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

110

Amino Acids

12.98

Weight (kDa)

6.83

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003680)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08260 FvH4_1g08260 FvH4_1g08260 FvH4_1g08260
malus_domestica	MD02G1086900.v1.1 MD02G1087000.v1.1 MD15G1214500.v1.1 MD15G1214600.v1.1
prunus_persica	Prupe.7G202700_v2.0.a1
pyrus_communis	pycom02g06990 pycom02g07000 pycom15g19040
rosa_chinensis	RchiOBHm_Chr2g0094331
rosa_laevigata	RLG00000016480
rosa_multiflora	Rmu_sc0003819.1_g000016 Rmu_sc0025410.1_g000001 Rmu_sc0025411.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147230 Rroxscaffold_7G00185070
rosa_rugosa	Rorug02G0043300 Rorug02G0043300
rosa_samantha	Rh2AG091000 Rh2AG091100 Rh2BG090900 Rh2CG093400 Rh2CG093500 Rh2DG089900 Rh6AG505100 Rh6BG272500 Rh6CG273600 Rh6CG521500 Rh6CG521800 Rh6DG266600 Rh6DG507600
rosa_wichuraiana	Rw6G043950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	124
AcuI	CTGAAG	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	3 cut(s)	197, 209, 296
AluBI	AGCT	2 cut(s)	157, 265
AluI	AGCT	2 cut(s)	157, 265
Alw26I	GTCTC	1 cut(s)	308
AspLEI	GCGC	1 cut(s)	222
AsuHPI	GGTGA	1 cut(s)	313
BccI	CCATC	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	308
BfmI	CTRYAG	1 cut(s)	266
BmsI	GCATC	1 cut(s)	118
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
BpuEI	CTTGAG	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	41
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseNI	ACTGG	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	308
BsmBI	CGTCTC	1 cut(s)	308
Bsp143I	GATC	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	41
BssMI	GATC	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	109
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	1 cut(s)	141
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	1 cut(s)	138
BstSFI	CTRYAG	1 cut(s)	266
BtgZI	GCGATG	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	3 cut(s)	48, 242, 306
CfoI	GCGC	1 cut(s)	222
CviAII	CATG	1 cut(s)	119
CviJI	RGCY	2 cut(s)	157, 265
CviKI_1	RGCY	2 cut(s)	157, 265
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	266
Esp3I	CGTCTC	1 cut(s)	308
FaeI	CATG	1 cut(s)	122
FaiI	YATR	5 cut(s)	84, 120, 149, 188, 277
FatI	CATG	1 cut(s)	118
FokI	GGATG	1 cut(s)	96
GlaI	GCGC	1 cut(s)	221
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	1 cut(s)	122
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HphI	GGTGA	1 cut(s)	313
Hpy188III	TCNNGA	1 cut(s)	197
Hsp92II	CATG	1 cut(s)	122
HspAI	GCGC	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	138
LpnPI	CCDG	1 cut(s)	54
LweI	GCATC	1 cut(s)	118
MaeIII	GTNAC	2 cut(s)	179, 319
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MboII	GAAGA	1 cut(s)	259
MfeI	CAATTG	1 cut(s)	24
MluCI	AATT	2 cut(s)	24, 250
MnlI	CCTC	1 cut(s)	82
MunI	CAATTG	1 cut(s)	24
NdeII	GATC	1 cut(s)	138
NlaIII	CATG	1 cut(s)	122
NmuCI	GTSAC	2 cut(s)	179, 319
PflMI	CCANNNNNTGG	1 cut(s)	124
Sau3AI	GATC	1 cut(s)	138
SetI	ASST	3 cut(s)	58, 159, 267
SfaNI	GCATC	1 cut(s)	118
SfcI	CTRYAG	1 cut(s)	266
SgeI	CNNG	5 cut(s)	53, 131, 146, 209, 305
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	2 cut(s)	24, 250
TaqI	TCGA	1 cut(s)	141
TasI	AATT	2 cut(s)	24, 250
TscAI	CASTG	3 cut(s)	48, 249, 313
TseFI	GTSAC	2 cut(s)	179, 319
Tsp45I	GTSAC	2 cut(s)	179, 319
TspDTI	ATGAA	2 cut(s)	164, 203
TspRI	CASTG	3 cut(s)	48, 249, 313
Van91I	CCANNNNNTGG	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.