Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003680

Physical Location & Seq

Genomic Coordinates Forward (+)

4851357 .. 4853041

Gene Structure 1685 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGAAGAGATCGATCGATCAAGAGAAAAGCTTTGAAGAACTGGTGAATGTCTACCTTGAACGCAAATCTCTGGCACATTCGTTAAATGACACTAAGACAGCGATAGAGGAGCTGAATAGGCTTGCCTCAGGGGTTTTGCTTCTTGTGATCATTATCGTGTGGCTACTTCTGATGGGATTTTTGACAACCAACATACTGGTCTTTATATCATCTCAGCTTTTACTGGTGGTCTTTGTATTTGGTAATACTGCTAAAACTGTGTTTGAAGCAATCATTTTCGTCTTTGTGATGCACCCCTTTGATGTAGGGGACCGTTGTGTCGTTGATGGAGTACAGCTCATAGTTGAAGAGATGAACATATTGACAACGATCTTCCTAAGATATGACAACGAGAAAATTTTCTATCCAAATTCAGTACTGGCTTCCAAACCCATCAGCAACTTCTACAGGAGTCCGGAGATGGGTGATTCTGTTGAATTTGCTGTTCACGTTTCTACAACGGCTGATACTATTGTGGCTCTAAAAGCCAGAATAAAAGAGTACTTGGACAGCAAGAGTCAGCACTGGCGTCCTGCCCATAGCGTGGTGGTTAAGGATATTGAGGACGTCAACAAAATGAAAATGGCTCTTTATGTTACGCATACCATAAACTTTCAGAACTACGGAGACAAGAGCAGTCGGAGATCGGATTTGGTCTTAGAGCTGAAGAAAATATTTGAAGATCTCGGTATAAAATATAAACTTCTGCCTCAAGAAGTTCATCTCCGCTATGTCGGATCGTCCACTGCAGAACTTCCACCAACGTGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel PsbX

Protein Analysis

271

Amino Acids

30.88

Weight (kDa)

6.18

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MS_channel_2nd	PF00924	92 - 148	3.4e-10	Mechanosensitive ion channel, beta-domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003680)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08260 FvH4_1g08260 FvH4_1g08260 FvH4_1g08260
malus_domestica	MD02G1086900.v1.1 MD02G1087000.v1.1 MD15G1214500.v1.1 MD15G1214600.v1.1
prunus_persica	Prupe.7G202700_v2.0.a1
pyrus_communis	pycom02g06990 pycom02g07000 pycom15g19040
rosa_chinensis	RchiOBHm_Chr2g0094331
rosa_laevigata	RLG00000016480
rosa_multiflora	Rmu_sc0003819.1_g000016 Rmu_sc0025410.1_g000001 Rmu_sc0025411.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147230 Rroxscaffold_7G00185070
rosa_rugosa	Rorug02G0043300 Rorug02G0043300
rosa_samantha	Rh2AG091000 Rh2AG091100 Rh2BG090900 Rh2CG093400 Rh2CG093500 Rh2DG089900 Rh6AG505100 Rh6BG272500 Rh6CG273600 Rh6CG521500 Rh6CG521800 Rh6DG266600 Rh6DG507600
rosa_wichuraiana	Rw6G043950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	317
AatII	GACGTC	1 cut(s)	609
AccB7I	CCANNNNNTGG	1 cut(s)	583
AccI	GTMKAC	1 cut(s)	51
AccIII	TCCGGA	1 cut(s)	454
AciI	CCGC	1 cut(s)	766
AclWI	GGATC	1 cut(s)	784
AcsI	RAATTY	3 cut(s)	396, 409, 476
AcuI	CTGAAG	1 cut(s)	725
AcyI	GRCGYC	2 cut(s)	568, 606
AfaI	GTAC	3 cut(s)	333, 417, 542
AfiI	CCNNNNNNNGG	2 cut(s)	461, 583
AgsI	TTSAA	6 cut(s)	35, 59, 266, 347, 476, 719
AleI	CACNNNNGTG	1 cut(s)	802
AluBI	AGCT	5 cut(s)	30, 112, 217, 337, 703
AluI	AGCT	5 cut(s)	30, 112, 217, 337, 703
Alw26I	GTCTC	1 cut(s)	660
AlwI	GGATC	1 cut(s)	784
Aor13HI	TCCGGA	1 cut(s)	454
ApoI	RAATTY	3 cut(s)	396, 409, 476
Asp700I	GAANNNNTTC	1 cut(s)	398
AspS9I	GGNCC	1 cut(s)	310
AsuHPI	GGTGA	2 cut(s)	55, 476
AvaII	GGWCC	1 cut(s)	310
AxyI	CCTNAGG	1 cut(s)	127
BaeI	ACNNNNGTAYC	2 cut(s)	498, 531
BccI	CCATC	4 cut(s)	166, 320, 440, 454
BceAI	ACGGC	1 cut(s)	516
BclI	TGATCA	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	660
BfmI	CTRYAG	2 cut(s)	445, 786
BglII	AGATCT	1 cut(s)	721
BmcAI	AGTACT	2 cut(s)	417, 542
Bme18I	GGWCC	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	1 cut(s)	311
BmsI	GCATC	1 cut(s)	279
BplI	GAGNNNNNCTC	2 cut(s)	321, 353
BpuEI	CTTGAG	1 cut(s)	735
Bsa29I	ATCGAT	2 cut(s)	11, 15
BsaBI	GATNNNNATC	1 cut(s)	152
BsaHI	GRCGYC	2 cut(s)	568, 606
BsaWI	WCCGGW	1 cut(s)	454
Bsc4I	CCNNNNNNNGG	2 cut(s)	461, 583
Bse1I	ACTGG	5 cut(s)	45, 201, 228, 423, 569
Bse21I	CCTNAGG	1 cut(s)	127
Bse8I	GATNNNNATC	1 cut(s)	152
BseAI	TCCGGA	1 cut(s)	454
BseCI	ATCGAT	2 cut(s)	11, 15
BseJI	GATNNNNATC	1 cut(s)	152
BseLI	CCNNNNNNNGG	2 cut(s)	461, 583
BseMII	CTCAG	2 cut(s)	141, 227
BseNI	ACTGG	5 cut(s)	45, 201, 228, 423, 569
BseRI	GAGGAG	1 cut(s)	122
Bsh1285I	CGRYCG	1 cut(s)	15
BshVI	ATCGAT	2 cut(s)	11, 15
BsiEI	CGRYCG	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	455
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	2 cut(s)	461, 583
BsmAI	GTCTC	1 cut(s)	660
BsmFI	GGGAC	1 cut(s)	323
Bsp13I	TCCGGA	1 cut(s)	454
Bsp143I	GATC	8 cut(s)	8, 12, 16, 147, 369, 683, 721, 776
BspACI	CCGC	1 cut(s)	766
BspCNI	CTCAG	2 cut(s)	140, 226
BspDI	ATCGAT	2 cut(s)	11, 15
BspEI	TCCGGA	1 cut(s)	454
BspLI	GGNNCC	1 cut(s)	311
BspMAI	CTGCAG	1 cut(s)	790
BspPI	GGATC	1 cut(s)	784
BsrI	ACTGG	5 cut(s)	45, 201, 228, 423, 569
BssMI	GATC	8 cut(s)	8, 12, 16, 147, 369, 683, 721, 776
BssNI	GRCGYC	2 cut(s)	568, 606
Bst4CI	ACNGT	2 cut(s)	259, 314
Bst6I	CTCTTC	1 cut(s)	342
BstACI	GRCGYC	2 cut(s)	568, 606
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	5 cut(s)	93, 127, 213, 377, 697
BstKTI	GATC	8 cut(s)	11, 15, 19, 150, 372, 686, 724, 779
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	8 cut(s)	8, 12, 16, 147, 369, 683, 721, 776
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 524
BstSFI	CTRYAG	2 cut(s)	445, 786
BstX2I	RGATCY	1 cut(s)	721
BstXI	CCANNNNNNTGG	2 cut(s)	196, 804
BstYI	RGATCY	1 cut(s)	721
Bsu15I	ATCGAT	2 cut(s)	11, 15
Bsu36I	CCTNAGG	1 cut(s)	127
BsuTUI	ATCGAT	2 cut(s)	11, 15
BtsI	GCAGTG	1 cut(s)	783
BtsIMutI	CAGTG	2 cut(s)	562, 783
Cac8I	GCNNGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	310
ClaI	ATCGAT	2 cut(s)	11, 15
CseI	GACGC	1 cut(s)	557
Csp6I	GTAC	3 cut(s)	332, 416, 541
CviQI	GTAC	3 cut(s)	332, 416, 541
DdeI	CTNAG	5 cut(s)	93, 127, 213, 377, 697
DpnI	GATC	8 cut(s)	10, 14, 18, 149, 371, 685, 723, 778
DpnII	GATC	8 cut(s)	8, 12, 16, 147, 369, 683, 721, 776
DrdI	GACNNNNNNGTC	1 cut(s)	317
DseDI	GACNNNNNNGTC	1 cut(s)	317
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco47I	GGWCC	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	725
Eco81I	CCTNAGG	1 cut(s)	127
FaqI	GGGAC	1 cut(s)	323
FbaI	TGATCA	1 cut(s)	147
FblI	GTMKAC	1 cut(s)	51
HapII	CCGG	1 cut(s)	455
HgaI	GACGC	1 cut(s)	557
Hin1I	GRCGYC	2 cut(s)	568, 606
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HindIII	AAGCTT	1 cut(s)	28
HinfI	GANTC	3 cut(s)	451, 467, 556
HpaII	CCGG	1 cut(s)	455
HphI	GGTGA	2 cut(s)	55, 476
Hpy166II	GTNNAC	4 cut(s)	52, 487, 610, 783
Hpy188I	TCNGA	5 cut(s)	171, 657, 681, 688, 776
Hpy188III	TCNNGA	3 cut(s)	20, 455, 752
Hpy8I	GTNNAC	4 cut(s)	52, 487, 610, 783
HpyCH4III	ACNGT	2 cut(s)	259, 314
HpyCH4IV	ACGT	3 cut(s)	489, 606, 803
HpyCH4V	TGCA	2 cut(s)	292, 788
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 524
HpyF3I	CTNAG	5 cut(s)	93, 127, 213, 377, 697
HpySE526I	ACGT	3 cut(s)	489, 606, 803
Hsp92I	GRCGYC	2 cut(s)	568, 606
Kpn2I	TCCGGA	1 cut(s)	454
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	8 cut(s)	8, 12, 16, 147, 369, 683, 721, 776
LmnI	GCTCC	1 cut(s)	109
LweI	GCATC	1 cut(s)	279
MaeII	ACGT	3 cut(s)	489, 606, 803
MaeIII	GTNAC	1 cut(s)	634
MalI	GATC	8 cut(s)	10, 14, 18, 149, 371, 685, 723, 778
MboI	GATC	8 cut(s)	8, 12, 16, 147, 369, 683, 721, 776
MboII	GAAGA	6 cut(s)	16, 47, 359, 364, 718, 731
MflI	RGATCY	1 cut(s)	721
MluCI	AATT	3 cut(s)	396, 409, 476
MlyI	GAGTC	2 cut(s)	460, 565
MmeI	TCCRAC	2 cut(s)	659, 754
MnlI	CCTC	4 cut(s)	100, 136, 595, 759
MroI	TCCGGA	1 cut(s)	454
MroXI	GAANNNNTTC	1 cut(s)	398
MseI	TTAA	2 cut(s)	83, 591
MslI	CAYNNNNRTG	2 cut(s)	155, 802
MspI	CCGG	1 cut(s)	455
MwoI	GCNNNNNNNGC	2 cut(s)	118, 524
NdeII	GATC	8 cut(s)	8, 12, 16, 147, 369, 683, 721, 776
NlaIV	GGNNCC	1 cut(s)	311
OliI	CACNNNNGTG	1 cut(s)	802
PdmI	GAANNNNTTC	1 cut(s)	398
PfeI	GAWTC	1 cut(s)	467
PflMI	CCANNNNNTGG	1 cut(s)	583
Ple19I	CGATCG	1 cut(s)	15
PleI	GAGTC	2 cut(s)	459, 564
PpsI	GAGTC	2 cut(s)	459, 564
PspN4I	GGNNCC	1 cut(s)	311
PspPI	GGNCC	1 cut(s)	310
PstI	CTGCAG	1 cut(s)	790
PsuI	RGATCY	1 cut(s)	721
PvuI	CGATCG	1 cut(s)	15
RsaI	GTAC	3 cut(s)	333, 417, 542
RsaNI	GTAC	3 cut(s)	332, 416, 541
RseI	CAYNNNNRTG	2 cut(s)	155, 802
SaqAI	TTAA	2 cut(s)	83, 591
Sau3AI	GATC	8 cut(s)	8, 12, 16, 147, 369, 683, 721, 776
Sau96I	GGNCC	1 cut(s)	310
ScaI	AGTACT	2 cut(s)	417, 542
SchI	GAGTC	2 cut(s)	460, 565
SetI	ASST	9 cut(s)	32, 57, 114, 219, 339, 492, 609, 705, 806
SfaNI	GCATC	1 cut(s)	279
SfcI	CTRYAG	2 cut(s)	445, 786
SinI	GGWCC	1 cut(s)	310
SmiMI	CAYNNNNRTG	2 cut(s)	155, 802
SmlI	CTYRAG	1 cut(s)	750
SmoI	CTYRAG	1 cut(s)	750
Sse9I	AATT	3 cut(s)	396, 409, 476
SsiI	CCGC	1 cut(s)	766
SspI	AATATT	1 cut(s)	714
TaaI	ACNGT	2 cut(s)	259, 314
TaiI	ACGT	3 cut(s)	492, 609, 806
TaqI	TCGA	2 cut(s)	11, 15
TasI	AATT	3 cut(s)	396, 409, 476
TatI	WGTACW	3 cut(s)	331, 415, 540
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	2 cut(s)	83, 591
Tru9I	TTAA	2 cut(s)	83, 591
TscAI	CASTG	2 cut(s)	569, 790
TspDTI	ATGAA	4 cut(s)	17, 368, 632, 749
TspGWI	ACGGA	1 cut(s)	678
TspRI	CASTG	2 cut(s)	569, 790
Van91I	CCANNNNNTGG	1 cut(s)	583
VpaK11BI	GGWCC	1 cut(s)	310
XapI	RAATTY	3 cut(s)	396, 409, 476
XmiI	GTMKAC	1 cut(s)	51
XmnI	GAANNNNTTC	1 cut(s)	398
ZraI	GACGTC	1 cut(s)	607
ZrmI	AGTACT	2 cut(s)	417, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.