Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0006627

Physical Location & Seq

Genomic Coordinates Reverse (-)

4609478 .. 4611700

Gene Structure 2223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2106 bp

ATGGCAACTCTAAGCACCCCCCTTATCTCTCTACCACGTCACTCACCAAATCCTCCATCGCCAACCGCCACTAACGAACTTTTCTCAAGCTACCCACCTCTTTCCTCAATCGACCTCTGCACCAGCATCAAGCAGCTGAAGCAAGTCCATGCCCAAATGCTCCGTACAGGCCTTCTCTTCGACCCCTACTCCGCCAGCAAGCTTATCACCGTCTGTGCTCTCTCCTCCTTCTCCAGCCTCGACTATGCCCGCCAAGTGTTCGACCAAATTCCCCAACCAAATCTCTACTCTTGGAACACCCTCATTCGCGCTTATGCGTCGAGCGCTGATCCGACTGAAAGCATCCTTGTATTTCTGGAAATGCTTTATCGCTGTATGGAGAGTCCCAATAAATTTACTTACCCGTTTGTGATCAAGGCGGCTTCAGAGCTCCGGGTTTTAGAGCTCGGAAGAGGGTTTCATGGCATGGTGATAAAGGCCTCACTTGGTTCAGATGTTTATATTCTCAATTCTCTGGTCCATTTCTATGGGTCGTGCGGGGATTTGGATTTGGCACGGCGGGTTTTCGTGAAGACTCCTAAGAAAGATGTTGTGTCTTGGAATTCTATGATCACGGCTTTTACGCAGGGGAATTGTCCCGAGGAGGCGTTGGAGTTGTTTAAGGAGATGGAGGCAGAGAATGTGAAGCCGAATGATGTGACGATGGTGAGTGTGTTGTCAGCTTGCGCAAAGAAGGTTGATTTGGAGTTTGGGAGGTGGGTTTGTTCGCCATTGAAGAAGCGAAAAGATTATTTGGTAGGATGCCAGAGAAGGATATTGTCTCTTGGACTACAATACTTGATGGGTATGCTCAGTCAGGAAATTATGATGAGGCTTGGCGGGTTTTCGCTGCGATGCCTAGTCAAGACATTGCTGCATGGAATGTCCTCATTTCGTCTTATGAACAAAGTGAAAAGGAAGAGCCCAAAACCTGATGAAGTCACTCTAGTTAGTACCCTGGCAGCCTGTGCTCAATTGGGAGCAATTGATCTTGGTGGCTGGATACATGTTTACGTAAAGAAGCAGGGTATGAAGATGAATTGTCACCTCACAACCTCACTTATTGACATGTATGCAAAGTGTGGCGACCTGGATAAGGCACTTGAGGTGTTTAATTCAGTGGAGAGGAGAGATGTGTTCGTCTGGAGCGCCATGATTGCTGCTCTGGCAATGCATGGGAAAGGGAGGGAGGCATTGGATTGTTTCTCAAGAATGCTAGAAACCAAGGTGAAGCCCAATTCCGTGACATTCACCAATGTGTTATGCGCTTGTAGCCATGCTGGATTGGTGGACGAAGGAAAAACATTTTTCTATCAGATGGAGCCAGTTTACGGGGTTGTGCCTGGTGTAAAGCACTATGCTTGCATGGTCGATATTTTAGGCCGTTATGGAAATCTGGAGGAAGCTACAGAGTTGATAGAGAAAATGCCAATAGCTCCTACTGCGTCTGTATGGGGGGCTCTTCTTGGGGCCTGTGGACTTCATGGGAATGTTGAGCTTGCCGAAAAGGCGTGTAGCCATATGCTTGAGTTGGATCCCAGAAACCACGGAGCTTATGTACTCTTATCAAATATCTATGCCAAGACAGGGAAATGGGAAGAAGTTTCAGGGTTAAGGCAGCGTATGCGAGATGCGGGAATTAAGAAAGAACCCGGTTGTAGTGCAATCGAAGTCAACGGTATTGTTCATGAGTTTCTAGTTGGTGATAACTCTCACCCTCTGTGCAAAGAAATATATTCAAAGTTGGATGAAATAGCAGGGAGATTGAAGTCAAATGGATACGTGCCAAACAAGTCACATCTACTGCAGTTTGTTGAGGAAGAAGACATGAAGAACCATGCCCTAATCCTTCACAGCGAGAAATTAGCGATTGCATTCGGGCTTATCAGCTTAAGTCCATCTCAACCAATTCAGGTTGTGAAGAATCTTCGTGTTTGCGGAGACTGCCACGCAGTTGCTAAGCTTATATCGAGGGTTTACGATAGGGAGATCTTGCCACCATTGAGAGATCGATATCGGTTTCATCATTTCAGAGACGGGCATTGCTCATGTAACGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

702

Amino Acids

78.25

Weight (kDa)

8.45

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	195 - 244	6.5e-13	PPR repeat family
PPR	PF01535	198 - 227	3.7e-08	PPR repeat
PPR_2	PF13041	390 - 438	3.8e-10	PPR repeat family
E_motif	PF20431	508 - 570	6.9e-24	E motif
Eplus_motif	PF20430	575 - 601	3.2e-08	E+ motif
DYW_deaminase	PF14432	606 - 701	1.9e-33	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29760
fragaria_vesca	FvH4_3g38420
malus_domestica	MD03G1072100.v1.1 MD11G1076100.v1.1 MD11G1076300.v1.1 MD11G1076700.v1.1
prunus_persica	Prupe.6G058800_v2.0.a1
pyrus_communis	pycom03g05830 pycom12g05280
rosa_chinensis	RchiOBHm_Chr5g0069041 RchiOBHm_Chr5g0069081
rosa_laevigata	RLG00000017743 RLG00000036033
rosa_multiflora	Rmu_co8508453.1_g000001 Rmu_sc0000853.1_g000010 Rmu_sc0000853.1_g000011 Rmu_sc0000936.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011680
rosa_rugosa	Rorug05G0395900
rosa_samantha	Rh5AG452500 Rh5AG482500 Rh5BG471800 Rh5BG503600 Rh5CG494200
rosa_wichuraiana	Rw0G006080 Rw5G042280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	727
AccII	CGCG	1 cut(s)	309
AciI	CCGC	9 cut(s)	66, 192, 250, 419, 537, 559, 879, 1673, 1977
AclWI	GGATC	3 cut(s)	323, 1568, 1581
AcsI	RAATTY	3 cut(s)	267, 392, 601
AcuI	CTGAAG	2 cut(s)	158, 408
AfaI	GTAC	3 cut(s)	166, 994, 1599
AfeI	AGCGCT	1 cut(s)	325
AfiI	CCNNNNNNNGG	3 cut(s)	1135, 1370, 1626
AflII	CTTAAG	1 cut(s)	1930
AflIII	ACRYGT	2 cut(s)	1045, 1107
AgsI	TTSAA	3 cut(s)	775, 1779, 1807
AjiI	CACGTC	1 cut(s)	38
AjnI	CCWGG	3 cut(s)	996, 1128, 1381
AjuI	GAANNNNNNNTTGG	2 cut(s)	725, 757
AleI	CACNNNNGTG	1 cut(s)	1295
Alw21I	GWGCWC	4 cut(s)	220, 432, 447, 1012
Alw26I	GTCTC	3 cut(s)	825, 1974, 2067
AlwI	GGATC	3 cut(s)	323, 1568, 1581
Ama87I	CYCGRG	1 cut(s)	638
Aor51HI	AGCGCT	1 cut(s)	325
AoxI	GGCC	4 cut(s)	169, 477, 1420, 1509
ApeKI	GCWGC	6 cut(s)	133, 889, 913, 1001, 1199, 1657
ApoI	RAATTY	3 cut(s)	267, 392, 601
AspLEI	GCGC	5 cut(s)	311, 326, 728, 1190, 1307
AspS9I	GGNCC	2 cut(s)	517, 1509
AsuC2I	CCSGG	2 cut(s)	434, 1692
AsuHPI	GGTGA	9 cut(s)	36, 199, 481, 718, 1076, 1279, 1282, 1745, 1754
AvaI	CYCGRG	1 cut(s)	638
AvaII	GGWCC	1 cut(s)	517
BamHI	GGATCC	1 cut(s)	1573
BanII	GRGCYC	4 cut(s)	432, 447, 965, 1501
BbsI	GAAGAC	2 cut(s)	578, 1869
Bbv12I	GWGCWC	4 cut(s)	220, 432, 447, 1012
BbvI	GCAGC	6 cut(s)	145, 876, 900, 1013, 1186, 1669
BccI	CCATC	6 cut(s)	64, 661, 697, 835, 1351, 1945
BceAI	ACGGC	3 cut(s)	572, 630, 1407
BciT130I	CCWGG	3 cut(s)	998, 1130, 1383
BciVI	GTATCC	2 cut(s)	1035, 1811
BclI	TGATCA	2 cut(s)	411, 609
BcnI	CCSGG	2 cut(s)	434, 1692
BcoDI	GTCTC	3 cut(s)	825, 1974, 2067
BfaI	CTAG	4 cut(s)	899, 986, 1256, 1736
BfmI	CTRYAG	2 cut(s)	1446, 1844
BfoI	RGCGCY	2 cut(s)	327, 1191
BfrI	CTTAAG	1 cut(s)	1930
BfuI	GTATCC	2 cut(s)	1035, 1811
BglI	GCCNNNNNGGC	1 cut(s)	1547
BglII	AGATCT	1 cut(s)	2028
BisI	GCNGC	7 cut(s)	134, 420, 890, 914, 1002, 1200, 1658
BlpI	GCTNAGC	1 cut(s)	1998
BlsI	GCNGC	7 cut(s)	135, 421, 891, 915, 1003, 1201, 1659
Bme1390I	CCNGG	5 cut(s)	434, 998, 1130, 1383, 1692
Bme18I	GGWCC	1 cut(s)	517
BmeT110I	CYCGRG	1 cut(s)	638
BmgBI	CACGTC	1 cut(s)	38
BmgT120I	GGNCC	2 cut(s)	517, 1509
BmiI	GGNNCC	3 cut(s)	1362, 1510, 1575
BmrFI	CCNGG	5 cut(s)	434, 998, 1130, 1383, 1692
BmsI	GCATC	5 cut(s)	135, 351, 791, 884, 1660
BpiI	GAAGAC	2 cut(s)	578, 1869
BpmI	CTGGAG	3 cut(s)	217, 1204, 1457
Bpu1102I	GCTNAGC	1 cut(s)	1998
BpuEI	CTTGAG	4 cut(s)	70, 1163, 1231, 1586
BpuMI	CCSGG	2 cut(s)	434, 1692
Bsa29I	ATCGAT	1 cut(s)	2050
BsaAI	YACGTR	2 cut(s)	1054, 1822
BsaBI	GATNNNNATC	1 cut(s)	2052
BsaJI	CCNNGG	4 cut(s)	639, 996, 1263, 1585
BsaXI	ACNNNNNCTCC	4 cut(s)	173, 203, 1581, 1611
Bsc4I	CCNNNNNNNGG	3 cut(s)	1135, 1370, 1626
Bse1I	ACTGG	1 cut(s)	1364
Bse3DI	GCAATG	3 cut(s)	908, 1215, 2080
Bse8I	GATNNNNATC	1 cut(s)	2052
BseBI	CCWGG	3 cut(s)	998, 1130, 1383
BseCI	ATCGAT	1 cut(s)	2050
BseDI	CCNNGG	4 cut(s)	639, 996, 1263, 1585
BseGI	GGATG	3 cut(s)	342, 806, 1792
BseJI	GATNNNNATC	1 cut(s)	2052
BseLI	CCNNNNNNNGG	3 cut(s)	1135, 1370, 1626
BseMI	GCAATG	3 cut(s)	908, 1215, 2080
BseMII	CTCAG	1 cut(s)	865
BseNI	ACTGG	1 cut(s)	1364
BseRI	GAGGAG	3 cut(s)	214, 656, 1180
BseXI	GCAGC	6 cut(s)	145, 876, 900, 1013, 1186, 1669
BsgI	GTGCAG	1 cut(s)	103
Bsh1236I	CGCG	1 cut(s)	309
BshFI	GGCC	4 cut(s)	171, 479, 1422, 1511
BshVI	ATCGAT	1 cut(s)	2050
BsiHKAI	GWGCWC	4 cut(s)	220, 432, 447, 1012
BsiHKCI	CYCGRG	1 cut(s)	638
BsiSI	CCGG	2 cut(s)	433, 1692
BslFI	GGGAC	2 cut(s)	369, 621
BslI	CCNNNNNNNGG	3 cut(s)	1135, 1370, 1626
BsmAI	GTCTC	3 cut(s)	825, 1974, 2067
BsmBI	CGTCTC	1 cut(s)	2067
BsmFI	GGGAC	2 cut(s)	369, 621
BsmI	GAATGC	2 cut(s)	1257, 1913
BsnI	GGCC	4 cut(s)	171, 479, 1422, 1511
BsoBI	CYCGRG	1 cut(s)	638
Bsp1286I	GDGCHC	6 cut(s)	220, 432, 447, 965, 1012, 1501
Bsp143I	GATC	7 cut(s)	328, 411, 609, 1027, 1573, 2028, 2047
Bsp1720I	GCTNAGC	1 cut(s)	1998
BspACI	CCGC	9 cut(s)	66, 192, 250, 419, 537, 559, 879, 1673, 1977
BspANI	GGCC	4 cut(s)	171, 479, 1422, 1511
BspCNI	CTCAG	1 cut(s)	864
BspDI	ATCGAT	1 cut(s)	2050
BspFNI	CGCG	1 cut(s)	309
BspHI	TCATGA	1 cut(s)	1726
BspLI	GGNNCC	3 cut(s)	1362, 1510, 1575
BspMAI	CTGCAG	1 cut(s)	1848
BspPI	GGATC	3 cut(s)	323, 1568, 1581
BspQI	GCTCTTC	2 cut(s)	953, 1506
BspTI	CTTAAG	1 cut(s)	1930
BsrDI	GCAATG	3 cut(s)	908, 1215, 2080
BsrI	ACTGG	1 cut(s)	1364
BssECI	CCNNGG	4 cut(s)	639, 996, 1263, 1585
BssMI	GATC	7 cut(s)	328, 411, 609, 1027, 1573, 2028, 2047
BssT1I	CCWWGG	1 cut(s)	1263
Bst2UI	CCWGG	3 cut(s)	998, 1130, 1383
Bst4CI	ACNGT	2 cut(s)	211, 1718
Bst6I	CTCTTC	4 cut(s)	182, 445, 953, 1506
BstAFI	CTTAAG	1 cut(s)	1930
BstAPI	GCANNNNNTGC	2 cut(s)	1007, 1663
BstBAI	YACGTR	2 cut(s)	1054, 1822
BstC8I	GCNNGC	6 cut(s)	196, 200, 250, 724, 1402, 1539
BstDEI	CTNAG	4 cut(s)	11, 579, 851, 1998
BstDSI	CCRYGG	1 cut(s)	1585
BstENI	CCTNNNNNAGG	1 cut(s)	1133
BstF5I	GGATG	3 cut(s)	342, 806, 1792
BstFNI	CGCG	1 cut(s)	309
BstH2I	RGCGCY	2 cut(s)	327, 1191
BstHHI	GCGC	5 cut(s)	311, 326, 728, 1190, 1307
BstKTI	GATC	7 cut(s)	331, 414, 612, 1030, 1576, 2031, 2050
BstMAI	GTCTC	3 cut(s)	825, 1974, 2067
BstMBI	GATC	7 cut(s)	328, 411, 609, 1027, 1573, 2028, 2047
BstNI	CCWGG	3 cut(s)	998, 1130, 1383
BstNSI	RCATGY	2 cut(s)	1049, 1111
BstSCI	CCNGG	5 cut(s)	432, 996, 1128, 1381, 1690
BstSFI	CTRYAG	2 cut(s)	1446, 1844
BstSNI	TACGTA	1 cut(s)	1054
BstUI	CGCG	1 cut(s)	309
BstV1I	GCAGC	6 cut(s)	145, 876, 900, 1013, 1186, 1669
BstV2I	GAAGAC	2 cut(s)	578, 1869
BstX2I	RGATCY	2 cut(s)	1573, 2028
BstXI	CCANNNNNNTGG	1 cut(s)	527
BstYI	RGATCY	2 cut(s)	1573, 2028
Bsu15I	ATCGAT	1 cut(s)	2050
BsuI	GTATCC	2 cut(s)	1035, 1811
BsuRI	GGCC	4 cut(s)	171, 479, 1422, 1511
BsuTUI	ATCGAT	1 cut(s)	2050
BtgI	CCRYGG	1 cut(s)	1585
BtgZI	GCGATG	2 cut(s)	42, 907
BtrI	CACGTC	1 cut(s)	38
BtsCI	GGATG	3 cut(s)	342, 806, 1792
BtsIMutI	CAGTG	1 cut(s)	1164
Cac8I	GCNNGC	6 cut(s)	196, 200, 250, 724, 1402, 1539
CciI	TCATGA	1 cut(s)	1726
CfoI	GCGC	5 cut(s)	311, 326, 728, 1190, 1307
Cfr13I	GGNCC	2 cut(s)	517, 1509
ClaI	ATCGAT	1 cut(s)	2050
CseI	GACGC	2 cut(s)	306, 1473
Csp6I	GTAC	3 cut(s)	165, 993, 1598
CviQI	GTAC	3 cut(s)	165, 993, 1598
DdeI	CTNAG	4 cut(s)	11, 579, 851, 1998
DpnI	GATC	7 cut(s)	330, 413, 611, 1029, 1575, 2030, 2049
DpnII	GATC	7 cut(s)	328, 411, 609, 1027, 1573, 2028, 2047
Eam1104I	CTCTTC	4 cut(s)	182, 445, 953, 1506
EarI	CTCTTC	4 cut(s)	182, 445, 953, 1506
EciI	GGCGGA	1 cut(s)	181
Ecl136II	GAGCTC	2 cut(s)	430, 445
Eco105I	TACGTA	1 cut(s)	1054
Eco130I	CCWWGG	1 cut(s)	1263
Eco147I	AGGCCT	2 cut(s)	171, 479
Eco24I	GRGCYC	4 cut(s)	432, 447, 965, 1501
Eco32I	GATATC	1 cut(s)	2054
Eco47I	GGWCC	1 cut(s)	517
Eco47III	AGCGCT	1 cut(s)	325
Eco53kI	GAGCTC	2 cut(s)	430, 445
Eco57I	CTGAAG	2 cut(s)	158, 408
Eco88I	CYCGRG	1 cut(s)	638
EcoICRI	GAGCTC	2 cut(s)	430, 445
EcoNI	CCTNNNNNAGG	1 cut(s)	1133
EcoO109I	RGGNCCY	1 cut(s)	1509
EcoRI	GAATTC	1 cut(s)	601
EcoRII	CCWGG	3 cut(s)	996, 1128, 1381
EcoRV	GATATC	1 cut(s)	2054
EcoT14I	CCWWGG	1 cut(s)	1263
EcoT22I	ATGCAT	1 cut(s)	1215
EcoT38I	GRGCYC	4 cut(s)	432, 447, 965, 1501
ErhI	CCWWGG	1 cut(s)	1263
Esp3I	CGTCTC	1 cut(s)	2067
FaqI	GGGAC	2 cut(s)	369, 621
FauI	CCCGC	5 cut(s)	257, 530, 552, 872, 1666
FauNDI	CATATG	1 cut(s)	1560
FbaI	TGATCA	2 cut(s)	411, 609
Fnu4HI	GCNGC	7 cut(s)	134, 420, 890, 914, 1002, 1200, 1658
FokI	GGATG	3 cut(s)	329, 813, 1799
FriOI	GRGCYC	4 cut(s)	432, 447, 965, 1501
Fsp4HI	GCNGC	7 cut(s)	134, 420, 890, 914, 1002, 1200, 1658
FspBI	CTAG	4 cut(s)	899, 986, 1256, 1736
FspI	TGCGCA	1 cut(s)	727
GlaI	GCGC	5 cut(s)	310, 325, 727, 1189, 1306
GluI	GCNGC	7 cut(s)	134, 420, 890, 914, 1002, 1200, 1658
GsuI	CTGGAG	3 cut(s)	217, 1204, 1457
HaeII	RGCGCY	2 cut(s)	327, 1191
HaeIII	GGCC	4 cut(s)	171, 479, 1422, 1511
HapII	CCGG	2 cut(s)	433, 1692
HgaI	GACGC	2 cut(s)	306, 1473
HhaI	GCGC	5 cut(s)	311, 326, 728, 1190, 1307
Hin6I	GCGC	5 cut(s)	309, 324, 726, 1188, 1305
HinP1I	GCGC	5 cut(s)	309, 324, 726, 1188, 1305
HincII	GTYRAC	1 cut(s)	1714
HindII	GTYRAC	1 cut(s)	1714
HindIII	AAGCTT	2 cut(s)	200, 2000
HinfI	GANTC	3 cut(s)	382, 574, 1963
HpaII	CCGG	2 cut(s)	433, 1692
HphI	GGTGA	9 cut(s)	36, 199, 481, 718, 1076, 1279, 1282, 1745, 1754
Hpy166II	GTNNAC	6 cut(s)	1051, 1330, 1369, 1517, 1714, 2017
Hpy188I	TCNGA	6 cut(s)	333, 427, 449, 493, 1356, 2072
Hpy188III	TCNNGA	9 cut(s)	356, 568, 638, 857, 904, 1183, 1248, 1436, 1727
Hpy8I	GTNNAC	6 cut(s)	1051, 1330, 1369, 1517, 1714, 2017
Hpy99I	CGWCG	1 cut(s)	322
HpyAV	CCTTC	6 cut(s)	182, 238, 727, 804, 1328, 1898
HpyCH4III	ACNGT	2 cut(s)	211, 1718
HpyCH4IV	ACGT	3 cut(s)	37, 1053, 1821
HpyCH4V	TGCA	9 cut(s)	120, 916, 1115, 1213, 1404, 1703, 1764, 1846, 1913
HpyF3I	CTNAG	4 cut(s)	11, 579, 851, 1998
HpySE526I	ACGT	3 cut(s)	37, 1053, 1821
HspAI	GCGC	5 cut(s)	309, 324, 726, 1188, 1305
Ksp22I	TGATCA	2 cut(s)	411, 609
Kzo9I	GATC	7 cut(s)	328, 411, 609, 1027, 1573, 2028, 2047
LguI	GCTCTTC	2 cut(s)	953, 1506
LmnI	GCTCC	7 cut(s)	165, 435, 1019, 1185, 1360, 1480, 1589
Lsp1109I	GCAGC	6 cut(s)	145, 876, 900, 1013, 1186, 1669
LweI	GCATC	5 cut(s)	135, 351, 791, 884, 1660
MaeI	CTAG	4 cut(s)	899, 986, 1256, 1736
MaeII	ACGT	3 cut(s)	37, 1053, 1821
MaeIII	GTNAC	7 cut(s)	38, 697, 979, 1082, 1282, 1833, 2090
MalI	GATC	7 cut(s)	330, 413, 611, 1029, 1575, 2030, 2049
MboI	GATC	7 cut(s)	328, 411, 609, 1027, 1573, 2028, 2047
MfeI	CAATTG	2 cut(s)	1013, 1023
MflI	RGATCY	2 cut(s)	1573, 2028
MhlI	GDGCHC	6 cut(s)	220, 432, 447, 965, 1012, 1501
MlyI	GAGTC	2 cut(s)	391, 568
MmeI	TCCRAC	4 cut(s)	356, 630, 1551, 1764
Mph1103I	ATGCAT	1 cut(s)	1215
MseI	TTAA	5 cut(s)	660, 1152, 1652, 1680, 1931
MslI	CAYNNNNRTG	3 cut(s)	525, 1295, 1527
MspA1I	CMGCKG	1 cut(s)	136
MspCI	CTTAAG	1 cut(s)	1930
MspI	CCGG	2 cut(s)	433, 1692
MspR9I	CCNGG	5 cut(s)	434, 998, 1130, 1383, 1692
MunI	CAATTG	2 cut(s)	1013, 1023
Mva1269I	GAATGC	2 cut(s)	1257, 1913
MvaI	CCWGG	3 cut(s)	998, 1130, 1383
MvnI	CGCG	1 cut(s)	309
NciI	CCSGG	2 cut(s)	434, 1692
NdeI	CATATG	1 cut(s)	1560
NdeII	GATC	7 cut(s)	328, 411, 609, 1027, 1573, 2028, 2047
NlaIV	GGNNCC	3 cut(s)	1362, 1510, 1575
NmuCI	GTSAC	6 cut(s)	38, 697, 979, 1082, 1282, 1833
NsbI	TGCGCA	1 cut(s)	727
NsiI	ATGCAT	1 cut(s)	1215
NspI	RCATGY	2 cut(s)	1049, 1111
OliI	CACNNNNGTG	1 cut(s)	1295
PagI	TCATGA	1 cut(s)	1726
PceI	AGGCCT	2 cut(s)	171, 479
PciI	ACATGT	2 cut(s)	1045, 1107
PciSI	GCTCTTC	2 cut(s)	953, 1506
PctI	GAATGC	2 cut(s)	1257, 1913
PfeI	GAWTC	1 cut(s)	1963
PkrI	GCNGC	7 cut(s)	135, 421, 891, 915, 1003, 1201, 1659
PleI	GAGTC	2 cut(s)	390, 568
PpsI	GAGTC	2 cut(s)	390, 568
Ppu21I	YACGTR	2 cut(s)	1054, 1822
PscI	ACATGT	2 cut(s)	1045, 1107
Psp124BI	GAGCTC	2 cut(s)	432, 447
Psp6I	CCWGG	3 cut(s)	996, 1128, 1381
PspGI	CCWGG	3 cut(s)	996, 1128, 1381
PspN4I	GGNNCC	3 cut(s)	1362, 1510, 1575
PspPI	GGNCC	2 cut(s)	517, 1509
PstI	CTGCAG	1 cut(s)	1848
PsuI	RGATCY	2 cut(s)	1573, 2028
PvuII	CAGCTG	1 cut(s)	136
RsaI	GTAC	3 cut(s)	166, 994, 1599
RsaNI	GTAC	3 cut(s)	165, 993, 1598
RseI	CAYNNNNRTG	3 cut(s)	525, 1295, 1527
SacI	GAGCTC	2 cut(s)	432, 447
SapI	GCTCTTC	2 cut(s)	953, 1506
SaqAI	TTAA	5 cut(s)	660, 1152, 1652, 1680, 1931
SatI	GCNGC	7 cut(s)	134, 420, 890, 914, 1002, 1200, 1658
Sau3AI	GATC	7 cut(s)	328, 411, 609, 1027, 1573, 2028, 2047
Sau96I	GGNCC	2 cut(s)	517, 1509
SchI	GAGTC	2 cut(s)	391, 568
ScrFI	CCNGG	5 cut(s)	434, 998, 1130, 1383, 1692
SduI	GDGCHC	6 cut(s)	220, 432, 447, 965, 1012, 1501
SfaNI	GCATC	5 cut(s)	135, 351, 791, 884, 1660
SfcI	CTRYAG	2 cut(s)	1446, 1844
SinI	GGWCC	1 cut(s)	517
SmiMI	CAYNNNNRTG	3 cut(s)	525, 1295, 1527
SmlI	CTYRAG	5 cut(s)	85, 1142, 1246, 1565, 1930
SmoI	CTYRAG	5 cut(s)	85, 1142, 1246, 1565, 1930
SnaBI	TACGTA	1 cut(s)	1054
SseBI	AGGCCT	2 cut(s)	171, 479
SsiI	CCGC	9 cut(s)	66, 192, 250, 419, 537, 559, 879, 1673, 1977
SspMI	CTAG	4 cut(s)	899, 986, 1256, 1736
SstI	GAGCTC	2 cut(s)	432, 447
StuI	AGGCCT	2 cut(s)	171, 479
StyD4I	CCNGG	5 cut(s)	432, 996, 1128, 1381, 1690
StyI	CCWWGG	1 cut(s)	1263
TaaI	ACNGT	2 cut(s)	211, 1718
TaiI	ACGT	3 cut(s)	40, 1056, 1824
TaqI	TCGA	9 cut(s)	111, 180, 240, 261, 320, 1410, 1707, 2009, 2050
TatI	WGTACW	1 cut(s)	1597
TauI	GCSGC	1 cut(s)	422
TfiI	GAWTC	1 cut(s)	1963
Tru1I	TTAA	5 cut(s)	660, 1152, 1652, 1680, 1931
Tru9I	TTAA	5 cut(s)	660, 1152, 1652, 1680, 1931
TscAI	CASTG	1 cut(s)	1164
TseFI	GTSAC	6 cut(s)	38, 697, 979, 1082, 1282, 1833
TseI	GCWGC	6 cut(s)	133, 889, 913, 1001, 1199, 1657
Tsp45I	GTSAC	6 cut(s)	38, 697, 979, 1082, 1282, 1833
TspGWI	ACGGA	3 cut(s)	152, 1270, 1602
TspRI	CASTG	1 cut(s)	1164
Vha464I	CTTAAG	1 cut(s)	1930
VpaK11BI	GGWCC	1 cut(s)	517
XagI	CCTNNNNNAGG	1 cut(s)	1133
XapI	RAATTY	3 cut(s)	267, 392, 601
XceI	RCATGY	2 cut(s)	1049, 1111
XspI	CTAG	4 cut(s)	899, 986, 1256, 1736
Zsp2I	ATGCAT	1 cut(s)	1215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.