Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0009062

Physical Location & Seq

Genomic Coordinates Reverse (-)

19620149 .. 19622692

Gene Structure 2544 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGAGGCCCCTCAGGGTGATATCACTAGGGATGAGATCATCAATAGCTACATCAAAACCCTGGCTACCGTCGTCGGAAGTGAGGAAGAAGCAAGAATGAAGATCTACTCAGTTTCAACTAGGTGCTATTATGCGTTTGGGGCGCTTGTATCTGAAGAGGTTTCACTCAAAATCAAAGAGTTGCCTGGAGTCCGTTGGGTACTTCCTGATTCCTACTTGGATGTTAAGAACAAAGATTATGGAGGTGAACCTTTTATTAATGGCCAAGCAGTGCCATATGATCCCAAATACCATGAGGAATGGATAAGAAACAATAGTCGAGCAAATGAGAGAAACAGGCGTAATGACAGACCTCGTAACTTTGACAGATCAAGGAACTTTGAAAGGAGAAGGGAAAATATGCAGAATCGTGATTTTCAGAATACGGGTCCATCTCCTATGCCTAATCAAGCTGGGCCAAATTCGGGACCTGGACCTGCCAACATGGGTCCTCCACCCCCCAACAGGGGTCCAATGTCTCCCAACATGGGTCCTCCACCCCCCAACAGGGCTCCAATGTCTCCCAACATGGGTCCTCCACCCCCGAACAGGGCTCCAATGCCACCTCCCAACATGGGTCAACCAAACAACTACAATAATCCCCAGCCAAGCAACAACTGGAATTCTGGGCCACCAAACAGCTATAACCAGGCGCCTCCCAACAGCTACAACCAGGCGCCTCCCAACAGCTACAATCAGATGCCGCCCAACAACTACAATCAGATGCCTCCCAATAACCCAGGAGGGGTGCCACCAAACAACATGGCTCCGCCTTCTAATGCAGAATGGAATGACCCTGGACAATACCAGAATAACTACACGCCAGACAGGGATGCTGGAGTCAATCCTGGTCCAAACCGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050897 GO:0071704 GO:0080156 GO:0090304 GO:1900864 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

302

Amino Acids

33.65

Weight (kDa)

8.54

Isoelectric Point (pI)

61.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	1 - 85	2.4e-33	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53260 AT1G53260 AT3G15000
fragaria_vesca	FvH4_3g18600
malus_domestica	MD03G1240700.v1.1 MD11G1260100.v1.1
prunus_persica	Prupe.4G168200_v2.0.a1
pyrus_communis	pycom03g18720 pycom11g22960
rosa_chinensis	RchiOBHm_Chr5g0031431
rosa_laevigata	RLG00000033306
rosa_multiflora	Rmu_co8400365.1_g000001 Rmu_sc0002426.1_g000011 Rmu_sc0014478.1_g000008 Rmu_sc0014478.1_g000009
rosa_roxburghii	Rroxscaffold_1G00048920
rosa_rugosa	Rorug05G0125300
rosa_samantha	Rh5AG218100 Rh5BG217700 Rh5CG241400 Rh5DG223000
rosa_wichuraiana	Rw5G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	484
AccB1I	GGYRCC	3 cut(s)	691, 715, 787
AciI	CCGC	2 cut(s)	743, 809
AclWI	GGATC	1 cut(s)	275
AcoI	YGGCCR	1 cut(s)	262
AcsI	RAATTY	2 cut(s)	460, 661
AcuI	CTGAAG	1 cut(s)	174
AcyI	GRCGYC	2 cut(s)	692, 716
AfaI	GTAC	1 cut(s)	201
AgsI	TTSAA	2 cut(s)	117, 383
AjnI	CCWGG	8 cut(s)	60, 184, 469, 687, 711, 778, 835, 886
AluBI	AGCT	5 cut(s)	48, 452, 681, 705, 729
AluI	AGCT	5 cut(s)	48, 452, 681, 705, 729
Alw26I	GTCTC	2 cut(s)	522, 564
AlwI	GGATC	1 cut(s)	275
AoxI	GGCC	4 cut(s)	6, 262, 455, 668
ApoI	RAATTY	2 cut(s)	460, 661
AseI	ATTAAT	1 cut(s)	258
AspLEI	GCGC	3 cut(s)	145, 694, 718
AsuHPI	GGTGA	2 cut(s)	29, 257
AvaII	GGWCC	8 cut(s)	428, 467, 473, 488, 509, 530, 572, 890
AxyI	CCTNAGG	1 cut(s)	12
BalI	TGGCCA	1 cut(s)	264
BanI	GGYRCC	3 cut(s)	691, 715, 787
BanII	GRGCYC	2 cut(s)	553, 595
BccI	CCATC	1 cut(s)	439
BciT130I	CCWGG	8 cut(s)	62, 186, 471, 689, 713, 780, 837, 888
BcoDI	GTCTC	2 cut(s)	522, 564
BfaI	CTAG	2 cut(s)	27, 120
BfoI	RGCGCY	3 cut(s)	146, 695, 719
BfuAI	ACCTGC	1 cut(s)	484
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	1 cut(s)	743
BlsI	GCNGC	1 cut(s)	744
Bme1390I	CCNGG	8 cut(s)	62, 186, 471, 689, 713, 780, 837, 888
Bme18I	GGWCC	8 cut(s)	428, 467, 473, 488, 509, 530, 572, 890
BmrFI	CCNGG	8 cut(s)	62, 186, 471, 689, 713, 780, 837, 888
BmsI	GCATC	3 cut(s)	729, 753, 862
BpmI	CTGGAG	2 cut(s)	207, 897
BsaHI	GRCGYC	2 cut(s)	692, 716
BsaJI	CCNNGG	3 cut(s)	60, 778, 835
Bse1I	ACTGG	1 cut(s)	662
Bse21I	CCTNAGG	1 cut(s)	12
BseBI	CCWGG	8 cut(s)	62, 186, 471, 689, 713, 780, 837, 888
BseDI	CCNNGG	3 cut(s)	60, 778, 835
BseGI	GGATG	3 cut(s)	37, 226, 877
BseMII	CTCAG	2 cut(s)	26, 123
BseNI	ACTGG	1 cut(s)	662
BseYI	CCCAGC	2 cut(s)	452, 642
BshFI	GGCC	4 cut(s)	8, 264, 457, 670
BshNI	GGYRCC	3 cut(s)	691, 715, 787
BslFI	GGGAC	1 cut(s)	480
BsmAI	GTCTC	2 cut(s)	522, 564
BsmFI	GGGAC	1 cut(s)	480
BsnI	GGCC	4 cut(s)	8, 264, 457, 670
Bsp1286I	GDGCHC	2 cut(s)	553, 595
Bsp143I	GATC	4 cut(s)	36, 102, 280, 368
BspACI	CCGC	2 cut(s)	743, 809
BspANI	GGCC	4 cut(s)	8, 264, 457, 670
BspCNI	CTCAG	2 cut(s)	25, 122
BspMI	ACCTGC	1 cut(s)	484
BspPI	GGATC	1 cut(s)	275
BspT107I	GGYRCC	3 cut(s)	691, 715, 787
BsrI	ACTGG	1 cut(s)	662
BssECI	CCNNGG	3 cut(s)	60, 778, 835
BssMI	GATC	4 cut(s)	36, 102, 280, 368
BssNI	GRCGYC	2 cut(s)	692, 716
Bst2UI	CCWGG	8 cut(s)	62, 186, 471, 689, 713, 780, 837, 888
Bst4CI	ACNGT	2 cut(s)	70, 899
Bst6I	CTCTTC	1 cut(s)	150
BstACI	GRCGYC	2 cut(s)	692, 716
BstDEI	CTNAG	2 cut(s)	12, 109
BstF5I	GGATG	3 cut(s)	37, 226, 877
BstH2I	RGCGCY	3 cut(s)	146, 695, 719
BstHHI	GCGC	3 cut(s)	145, 694, 718
BstKTI	GATC	4 cut(s)	39, 105, 283, 371
BstMAI	GTCTC	2 cut(s)	522, 564
BstMBI	GATC	4 cut(s)	36, 102, 280, 368
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	8 cut(s)	62, 186, 471, 689, 713, 780, 837, 888
BstSCI	CCNGG	8 cut(s)	60, 184, 469, 687, 711, 778, 835, 886
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
Bsu36I	CCTNAGG	1 cut(s)	12
BsuRI	GGCC	4 cut(s)	8, 264, 457, 670
BtsCI	GGATG	3 cut(s)	37, 226, 877
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	276
BveI	ACCTGC	1 cut(s)	484
CfoI	GCGC	3 cut(s)	145, 694, 718
Csp6I	GTAC	1 cut(s)	200
CviAII	CATG	6 cut(s)	293, 484, 526, 568, 613, 802
CviQI	GTAC	1 cut(s)	200
DdeI	CTNAG	2 cut(s)	12, 109
DinI	GGCGCC	2 cut(s)	693, 717
DpnI	GATC	4 cut(s)	38, 104, 282, 370
DpnII	GATC	4 cut(s)	36, 102, 280, 368
EaeI	YGGCCR	1 cut(s)	262
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
EciI	GGCGGA	1 cut(s)	798
Eco24I	GRGCYC	2 cut(s)	553, 595
Eco32I	GATATC	1 cut(s)	22
Eco47I	GGWCC	8 cut(s)	428, 467, 473, 488, 509, 530, 572, 890
Eco57I	CTGAAG	1 cut(s)	174
Eco81I	CCTNAGG	1 cut(s)	12
EcoO109I	RGGNCCY	5 cut(s)	7, 467, 488, 530, 572
EcoRI	GAATTC	1 cut(s)	661
EcoRII	CCWGG	8 cut(s)	60, 184, 469, 687, 711, 778, 835, 886
EcoRV	GATATC	1 cut(s)	22
EcoT38I	GRGCYC	2 cut(s)	553, 595
EgeI	GGCGCC	2 cut(s)	693, 717
EheI	GGCGCC	2 cut(s)	693, 717
FaeI	CATG	6 cut(s)	296, 487, 529, 571, 616, 805
FaqI	GGGAC	1 cut(s)	480
FatI	CATG	6 cut(s)	292, 483, 525, 567, 612, 801
FauNDI	CATATG	1 cut(s)	277
Fnu4HI	GCNGC	1 cut(s)	743
FokI	GGATG	3 cut(s)	44, 233, 884
FriOI	GRGCYC	2 cut(s)	553, 595
Fsp4HI	GCNGC	1 cut(s)	743
FspBI	CTAG	2 cut(s)	27, 120
GlaI	GCGC	3 cut(s)	144, 693, 717
GluI	GCNGC	1 cut(s)	743
GsaI	CCCAGC	2 cut(s)	456, 646
GsuI	CTGGAG	2 cut(s)	207, 897
HaeII	RGCGCY	3 cut(s)	146, 695, 719
HaeIII	GGCC	4 cut(s)	8, 264, 457, 670
HhaI	GCGC	3 cut(s)	145, 694, 718
Hin1I	GRCGYC	2 cut(s)	692, 716
Hin1II	CATG	6 cut(s)	296, 487, 529, 571, 616, 805
Hin6I	GCGC	3 cut(s)	143, 692, 716
HinP1I	GCGC	3 cut(s)	143, 692, 716
HincII	GTYRAC	1 cut(s)	620
HindII	GTYRAC	1 cut(s)	620
HinfI	GANTC	4 cut(s)	189, 209, 406, 879
HphI	GGTGA	2 cut(s)	29, 257
Hpy166II	GTNNAC	2 cut(s)	248, 620
Hpy188I	TCNGA	5 cut(s)	77, 154, 420, 738, 762
Hpy188III	TCNNGA	3 cut(s)	206, 410, 465
Hpy8I	GTNNAC	2 cut(s)	248, 620
Hpy99I	CGWCG	2 cut(s)	74, 77
HpyAV	CCTTC	2 cut(s)	384, 822
HpyCH4III	ACNGT	2 cut(s)	70, 899
HpyCH4V	TGCA	2 cut(s)	403, 821
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	2 cut(s)	12, 109
Hsp92I	GRCGYC	2 cut(s)	692, 716
Hsp92II	CATG	6 cut(s)	296, 487, 529, 571, 616, 805
HspAI	GCGC	3 cut(s)	143, 692, 716
KasI	GGCGCC	2 cut(s)	691, 715
Kzo9I	GATC	4 cut(s)	36, 102, 280, 368
LmnI	GCTCC	3 cut(s)	556, 598, 811
LweI	GCATC	3 cut(s)	729, 753, 862
MaeI	CTAG	2 cut(s)	27, 120
MaeIII	GTNAC	2 cut(s)	356, 899
MalI	GATC	4 cut(s)	38, 104, 282, 370
MboI	GATC	4 cut(s)	36, 102, 280, 368
MboII	GAAGA	3 cut(s)	98, 112, 167
MflI	RGATCY	1 cut(s)	102
MhlI	GDGCHC	2 cut(s)	553, 595
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	2 cut(s)	460, 661
MluNI	TGGCCA	1 cut(s)	264
Mly113I	GGCGCC	2 cut(s)	692, 716
MlyI	GAGTC	2 cut(s)	198, 888
MmeI	TCCRAC	1 cut(s)	55
Mox20I	TGGCCA	1 cut(s)	264
MscI	TGGCCA	1 cut(s)	264
MseI	TTAA	2 cut(s)	225, 258
Msp20I	TGGCCA	1 cut(s)	264
MspR9I	CCNGG	8 cut(s)	62, 186, 471, 689, 713, 780, 837, 888
MvaI	CCWGG	8 cut(s)	62, 186, 471, 689, 713, 780, 837, 888
MwoI	GCNNNNNNNGC	1 cut(s)	140
NarI	GGCGCC	2 cut(s)	692, 716
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	4 cut(s)	36, 102, 280, 368
NlaIII	CATG	6 cut(s)	296, 487, 529, 571, 616, 805
PfeI	GAWTC	2 cut(s)	209, 406
PkrI	GCNGC	1 cut(s)	744
PleI	GAGTC	2 cut(s)	197, 887
PluTI	GGCGCC	2 cut(s)	695, 719
PpsI	GAGTC	2 cut(s)	197, 887
PpuMI	RGGWCCY	4 cut(s)	467, 488, 530, 572
PshBI	ATTAAT	1 cut(s)	258
Psp5II	RGGWCCY	4 cut(s)	467, 488, 530, 572
Psp6I	CCWGG	8 cut(s)	60, 184, 469, 687, 711, 778, 835, 886
PspFI	CCCAGC	2 cut(s)	452, 642
PspGI	CCWGG	8 cut(s)	60, 184, 469, 687, 711, 778, 835, 886
PspPPI	RGGWCCY	4 cut(s)	467, 488, 530, 572
PsuI	RGATCY	1 cut(s)	102
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
SaqAI	TTAA	2 cut(s)	225, 258
SatI	GCNGC	1 cut(s)	743
Sau3AI	GATC	4 cut(s)	36, 102, 280, 368
SchI	GAGTC	2 cut(s)	198, 888
ScrFI	CCNGG	8 cut(s)	62, 186, 471, 689, 713, 780, 837, 888
SduI	GDGCHC	2 cut(s)	553, 595
SfaNI	GCATC	3 cut(s)	729, 753, 862
SfoI	GGCGCC	2 cut(s)	693, 717
SinI	GGWCC	8 cut(s)	428, 467, 473, 488, 509, 530, 572, 890
Sse9I	AATT	2 cut(s)	460, 661
SsiI	CCGC	2 cut(s)	743, 809
SspDI	GGCGCC	2 cut(s)	691, 715
SspMI	CTAG	2 cut(s)	27, 120
StyD4I	CCNGG	8 cut(s)	60, 184, 469, 687, 711, 778, 835, 886
TaaI	ACNGT	2 cut(s)	70, 899
TaqI	TCGA	1 cut(s)	319
TasI	AATT	2 cut(s)	460, 661
TauI	GCSGC	1 cut(s)	745
TfiI	GAWTC	2 cut(s)	209, 406
Tru1I	TTAA	2 cut(s)	225, 258
Tru9I	TTAA	2 cut(s)	225, 258
TscAI	CASTG	1 cut(s)	276
TspDTI	ATGAA	1 cut(s)	113
TspGWI	ACGGA	1 cut(s)	182
TspRI	CASTG	1 cut(s)	276
VpaK11BI	GGWCC	8 cut(s)	428, 467, 473, 488, 509, 530, 572, 890
VspI	ATTAAT	1 cut(s)	258
XapI	RAATTY	2 cut(s)	460, 661
XcmI	CCANNNNNNNNNTGG	1 cut(s)	654
XspI	CTAG	2 cut(s)	27, 120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.