pycom04g04230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0008695
Physical Location & Seq
Reverse (-)
3797335 .. 3797690
356 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g04230.2

Sequence Viewer

Length: 204 bp
ATGAAACTAAGATATACGATCTCTGTGGCCTTCTTGAGCCATTCCGGAGTTGAGACAACAAGAATTTTACCAGCTGAGGACTTTGCCCACGCTAATCACCTTCGAACAGACTACTCCTCCGTCTACCGAAACGCGAAGAGCACCATGGCTTGTTGGATCCAAAAATTGGCTTCTGGTCCTAGTCCTAGAGGCCGTGGTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.49

Weight (kDa)

10.01

Isoelectric Point (pI)

38.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 166
AccI GTMKAC 1 cut(s) 123
AccII CGCG 1 cut(s) 134
AccIII TCCGGA 1 cut(s) 44
AclWI GGATC 2 cut(s) 151, 164
AcsI RAATTY 1 cut(s) 63
AfiI CCNNNNNNNGG 1 cut(s) 166
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 47
AlwI GGATC 2 cut(s) 151, 164
Aor13HI TCCGGA 1 cut(s) 44
AoxI GGCC 2 cut(s) 27, 190
ApoI RAATTY 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 89
AsuII TTCGAA 1 cut(s) 103
AvaII GGWCC 1 cut(s) 176
BamHI GGATCC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 143
BbvCI CCTCAGC 1 cut(s) 75
BceAI ACGGC 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 47
BfaI CTAG 3 cut(s) 180, 186, 202
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 158
Bpu10I CCTNAGC 1 cut(s) 75
Bpu14I TTCGAA 1 cut(s) 103
BpuEI CTTGAG 1 cut(s) 55
BsaJI CCNNGG 2 cut(s) 144, 193
BsaWI WCCGGW 1 cut(s) 44
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 1 cut(s) 166
BseAI TCCGGA 1 cut(s) 44
BseDI CCNNGG 2 cut(s) 144, 193
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 66
BseRI GAGGAG 1 cut(s) 106
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 2 cut(s) 29, 192
BsiHKAI GWGCWC 1 cut(s) 143
BsiSI CCGG 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 47
BsnI GGCC 2 cut(s) 29, 192
Bsp119I TTCGAA 1 cut(s) 103
Bsp1286I GDGCHC 1 cut(s) 143
Bsp13I TCCGGA 1 cut(s) 44
Bsp143I GATC 2 cut(s) 18, 156
Bsp19I CCATGG 1 cut(s) 144
BspANI GGCC 2 cut(s) 29, 192
BspCNI CTCAG 1 cut(s) 67
BspEI TCCGGA 1 cut(s) 44
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 1 cut(s) 158
BspPI GGATC 2 cut(s) 151, 164
BspQI GCTCTTC 1 cut(s) 131
BspT104I TTCGAA 1 cut(s) 103
BssECI CCNNGG 2 cut(s) 144, 193
BssMI GATC 2 cut(s) 18, 156
BssT1I CCWWGG 1 cut(s) 144
Bst6I CTCTTC 1 cut(s) 131
BstBI TTCGAA 1 cut(s) 103
BstDEI CTNAG 2 cut(s) 8, 75
BstDSI CCRYGG 2 cut(s) 144, 193
BstFNI CGCG 1 cut(s) 134
BstKTI GATC 2 cut(s) 21, 159
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 2 cut(s) 18, 156
BstUI CGCG 1 cut(s) 134
BstX2I RGATCY 1 cut(s) 156
BstYI RGATCY 1 cut(s) 156
BsuRI GGCC 2 cut(s) 29, 192
BtgI CCRYGG 2 cut(s) 144, 193
Cfr13I GGNCC 1 cut(s) 176
CviAII CATG 1 cut(s) 145
CviJI RGCY 6 cut(s) 29, 39, 74, 149, 170, 192
CviKI_1 RGCY 6 cut(s) 29, 39, 74, 149, 170, 192
DdeI CTNAG 2 cut(s) 8, 75
DpnI GATC 2 cut(s) 20, 158
DpnII GATC 2 cut(s) 18, 156
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco130I CCWWGG 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 1 cut(s) 148
FaiI YATR 2 cut(s) 15, 146
FatI CATG 1 cut(s) 144
FblI GTMKAC 1 cut(s) 123
FspBI CTAG 3 cut(s) 180, 186, 202
HaeIII GGCC 2 cut(s) 29, 192
HapII CCGG 1 cut(s) 45
Hin1II CATG 1 cut(s) 148
HpaII CCGG 1 cut(s) 45
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 124
Hpy188III TCNNGA 2 cut(s) 34, 45
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 2 cut(s) 40, 110
HpyF3I CTNAG 2 cut(s) 8, 75
Hsp92II CATG 1 cut(s) 148
Kpn2I TCCGGA 1 cut(s) 44
Kzo9I GATC 2 cut(s) 18, 156
LguI GCTCTTC 1 cut(s) 131
LpnPI CCDG 3 cut(s) 58, 84, 159
MaeI CTAG 3 cut(s) 180, 186, 202
MaeIII GTNAC 1 cut(s) 197
MalI GATC 2 cut(s) 20, 158
MboI GATC 2 cut(s) 18, 156
MboII GAAGA 1 cut(s) 148
MflI RGATCY 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 2 cut(s) 63, 164
MmeI TCCRAC 1 cut(s) 134
MnlI CCTC 3 cut(s) 70, 127, 182
MroI TCCGGA 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 1 cut(s) 45
MvnI CGCG 1 cut(s) 134
NcoI CCATGG 1 cut(s) 144
NdeII GATC 2 cut(s) 18, 156
NlaIII CATG 1 cut(s) 148
NlaIV GGNNCC 1 cut(s) 158
NmuCI GTSAC 1 cut(s) 197
NspV TTCGAA 1 cut(s) 103
PciSI GCTCTTC 1 cut(s) 131
PflMI CCANNNNNTGG 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 158
PspPI GGNCC 1 cut(s) 176
PsuI RGATCY 1 cut(s) 156
PvuII CAGCTG 1 cut(s) 74
SapI GCTCTTC 1 cut(s) 131
Sau3AI GATC 2 cut(s) 18, 156
Sau96I GGNCC 1 cut(s) 176
SduI GDGCHC 1 cut(s) 143
SetI ASST 2 cut(s) 76, 102
SfuI TTCGAA 1 cut(s) 103
SinI GGWCC 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 2 cut(s) 63, 164
SspMI CTAG 3 cut(s) 180, 186, 202
StyI CCWWGG 1 cut(s) 144
TaqI TCGA 1 cut(s) 103
TasI AATT 2 cut(s) 63, 164
TseFI GTSAC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 109
Van91I CCANNNNNTGG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 176
XapI RAATTY 1 cut(s) 63
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 3 cut(s) 180, 186, 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.