Rroxscaffold_2G00121640

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0008695
Physical Location & Seq
Reverse (-)
54302726 .. 54302959
234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00121640.1

Sequence Viewer

Length: 234 bp
ATGAACTCCCACAGGATGAGTAGCCTATTGTTCATTATAACAGTCCTGGCCATCTCCACTCATTTTGCTCATGTCCTAGCCACAAGACTGCCACCGGTGGACTTCGCTGGTGCTAATCATTTAGGGACATACTCCTCCCCAGCGTCTTTGGTCTATGAGAAGGCGAAGTACACCATGGAATGCTGGCTTCAACGTCTAGAGTCAGGACAAAGCCCCGGAGGACCTGGTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko01100 ko01110 map00100 map01100 map01110
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

77

Amino Acids

8.4

Weight (kDa)

8.0

Isoelectric Point (pI)

55.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 38
AcoI YGGCCR 1 cut(s) 48
AfaI GTAC 1 cut(s) 170
AgeI ACCGGT 1 cut(s) 94
AgsI TTSAA 1 cut(s) 191
AjnI CCWGG 2 cut(s) 45, 223
AoxI GGCC 1 cut(s) 48
AsiGI ACCGGT 1 cut(s) 94
AspS9I GGNCC 1 cut(s) 221
AsuC2I CCSGG 1 cut(s) 216
AvaII GGWCC 1 cut(s) 221
BalI TGGCCA 1 cut(s) 50
BarI GAAGNNNNNNTAC 2 cut(s) 152, 184
BccI CCATC 1 cut(s) 59
BciT130I CCWGG 2 cut(s) 47, 225
BcnI CCSGG 1 cut(s) 216
BfaI CTAG 3 cut(s) 77, 197, 232
Bme1390I CCNGG 3 cut(s) 47, 216, 225
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 221
BmrFI CCNGG 3 cut(s) 47, 216, 225
BpuMI CCSGG 1 cut(s) 216
BsaJI CCNNGG 2 cut(s) 174, 214
BsaWI WCCGGW 1 cut(s) 94
Bse118I RCCGGY 1 cut(s) 94
BseBI CCWGG 2 cut(s) 47, 225
BseDI CCNNGG 2 cut(s) 174, 214
BseGI GGATG 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 124
BseYI CCCAGC 1 cut(s) 139
BshFI GGCC 1 cut(s) 50
BshTI ACCGGT 1 cut(s) 94
BsiSI CCGG 2 cut(s) 95, 216
BslFI GGGAC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 139
BsmI GAATGC 1 cut(s) 185
BsnI GGCC 1 cut(s) 50
Bsp19I CCATGG 1 cut(s) 174
BspANI GGCC 1 cut(s) 50
BsrFI RCCGGY 1 cut(s) 94
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 2 cut(s) 174, 214
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 2 cut(s) 47, 225
Bst4CI ACNGT 1 cut(s) 43
BstC8I GCNNGC 1 cut(s) 185
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 21
BstNI CCWGG 2 cut(s) 47, 225
BstSCI CCNGG 3 cut(s) 45, 214, 223
BsuRI GGCC 1 cut(s) 50
BtgI CCRYGG 1 cut(s) 174
BtsCI GGATG 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 185
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 221
CseI GACGC 1 cut(s) 132
CsiI ACCWGGT 1 cut(s) 223
Csp6I GTAC 1 cut(s) 169
CspAI ACCGGT 1 cut(s) 94
CspCI CAANNNNNGTGG 2 cut(s) 46, 81
CviAII CATG 2 cut(s) 71, 175
CviJI RGCY 5 cut(s) 24, 50, 80, 187, 213
CviKI_1 RGCY 5 cut(s) 24, 50, 80, 187, 213
CviQI GTAC 1 cut(s) 169
EaeI YGGCCR 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 221
EcoO109I RGGNCCY 1 cut(s) 221
EcoRII CCWGG 2 cut(s) 45, 223
EcoT14I CCWWGG 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 2 cut(s) 74, 178
FaiI YATR 5 cut(s) 38, 72, 130, 156, 176
FaqI GGGAC 1 cut(s) 139
FatI CATG 2 cut(s) 70, 174
FokI GGATG 1 cut(s) 28
FspBI CTAG 3 cut(s) 77, 197, 232
GsaI CCCAGC 1 cut(s) 143
HaeIII GGCC 1 cut(s) 50
HapII CCGG 2 cut(s) 95, 216
HgaI GACGC 1 cut(s) 132
Hin1II CATG 2 cut(s) 74, 178
HinfI GANTC 1 cut(s) 200
HpaII CCGG 2 cut(s) 95, 216
Hpy166II GTNNAC 2 cut(s) 100, 171
Hpy188III TCNNGA 2 cut(s) 197, 204
Hpy8I GTNNAC 2 cut(s) 100, 171
HpyAV CCTTC 1 cut(s) 154
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 1 cut(s) 193
HpySE526I ACGT 1 cut(s) 193
Hsp92II CATG 2 cut(s) 74, 178
LpnPI CCDG 9 cut(s) 32, 59, 93, 108, 153, 169, 189, 210, 229
MabI ACCWGGT 1 cut(s) 223
MaeI CTAG 3 cut(s) 77, 197, 232
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 1 cut(s) 227
MlsI TGGCCA 1 cut(s) 50
MluNI TGGCCA 1 cut(s) 50
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 2 cut(s) 145, 212
Mox20I TGGCCA 1 cut(s) 50
MscI TGGCCA 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 50
MspI CCGG 2 cut(s) 95, 216
MspR9I CCNGG 3 cut(s) 47, 216, 225
Mva1269I GAATGC 1 cut(s) 185
MvaI CCWGG 2 cut(s) 47, 225
NciI CCSGG 1 cut(s) 216
NcoI CCATGG 1 cut(s) 174
NlaIII CATG 2 cut(s) 74, 178
NmuCI GTSAC 1 cut(s) 227
PctI GAATGC 1 cut(s) 185
PflFI GACNNNGTC 1 cut(s) 225
PinAI ACCGGT 1 cut(s) 94
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PpuMI RGGWCCY 1 cut(s) 221
PsiI TTATAA 1 cut(s) 38
Psp5II RGGWCCY 1 cut(s) 221
Psp6I CCWGG 2 cut(s) 45, 223
PspFI CCCAGC 1 cut(s) 139
PspGI CCWGG 2 cut(s) 45, 223
PspPI GGNCC 1 cut(s) 221
PspPPI RGGWCCY 1 cut(s) 221
PsyI GACNNNGTC 1 cut(s) 225
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
Sau96I GGNCC 1 cut(s) 221
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 3 cut(s) 47, 216, 225
SetI ASST 2 cut(s) 196, 226
SexAI ACCWGGT 1 cut(s) 223
SgrAI CRCCGGYG 1 cut(s) 94
SinI GGWCC 1 cut(s) 221
SspMI CTAG 3 cut(s) 77, 197, 232
StyD4I CCNGG 3 cut(s) 45, 214, 223
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 1 cut(s) 196
TatI WGTACW 1 cut(s) 168
TseFI GTSAC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 2 cut(s) 17, 22
Tth111I GACNNNGTC 1 cut(s) 225
VpaK11BI GGWCC 1 cut(s) 221
XbaI TCTAGA 1 cut(s) 196
XspI CTAG 3 cut(s) 77, 197, 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.