Rh2BG306100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0008695
Physical Location & Seq
Forward (+)
35581277 .. 35582095
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG306100.1

Sequence Viewer

Length: 255 bp
ATGATTGGCTTACACAATCGAGTCACGTGGTTCGCTTTCTTTGATGGTGAGGATAGGTGTGGGGCGTTGACTGCATCTCCTACTCCTGTTTTTGTTCAAGCCACCAGACTGCCACCGGTGGACTTCGCTGGTGCTAATCATTTGGGGACATTCTCCTCCCCAGCGTCTTTGGTCTATGAGAAGGCCAAGTACTCCATGGAATGCTGGCTTCAACGTCTAGCTTCAGGACAAAGCCCCGGAGGGCCTGGTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.06

Weight (kDa)

6.81

Isoelectric Point (pI)

55.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 207
AcvI CACGTG 1 cut(s) 27
AfaI GTAC 1 cut(s) 191
AgeI ACCGGT 1 cut(s) 115
AgsI TTSAA 2 cut(s) 98, 212
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
AoxI GGCC 2 cut(s) 183, 242
AsiGI ACCGGT 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 242
AsuC2I CCSGG 1 cut(s) 237
AsuHPI GGTGA 1 cut(s) 59
BarI GAAGNNNNNNTAC 2 cut(s) 173, 205
BbrPI CACGTG 1 cut(s) 27
BccI CCATC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 246
BcnI CCSGG 1 cut(s) 237
BfaI CTAG 2 cut(s) 218, 253
BmcAI AGTACT 1 cut(s) 191
Bme1390I CCNGG 2 cut(s) 237, 246
BmgT120I GGNCC 1 cut(s) 242
BmrFI CCNGG 2 cut(s) 237, 246
BmsI GCATC 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 237
BsaAI YACGTR 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 195, 235
BsaWI WCCGGW 1 cut(s) 115
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
Bse118I RCCGGY 1 cut(s) 115
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 2 cut(s) 195, 235
BseRI GAGGAG 1 cut(s) 145
BseYI CCCAGC 1 cut(s) 160
BshFI GGCC 2 cut(s) 185, 244
BshTI ACCGGT 1 cut(s) 115
BsiSI CCGG 2 cut(s) 116, 237
BslFI GGGAC 1 cut(s) 160
BsmFI GGGAC 1 cut(s) 160
BsmI GAATGC 1 cut(s) 206
BsnI GGCC 2 cut(s) 185, 244
Bsp19I CCATGG 1 cut(s) 195
BspANI GGCC 2 cut(s) 185, 244
BsrFI RCCGGY 1 cut(s) 115
BssAI RCCGGY 1 cut(s) 115
BssECI CCNNGG 2 cut(s) 195, 235
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 246
BstBAI YACGTR 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 206
BstDSI CCRYGG 1 cut(s) 195
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 2 cut(s) 235, 244
BsuRI GGCC 2 cut(s) 185, 244
BtgI CCRYGG 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 206
Cfr10I RCCGGY 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 242
CseI GACGC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 190
CspAI ACCGGT 1 cut(s) 115
CviAII CATG 1 cut(s) 196
CviJI RGCY 7 cut(s) 9, 101, 185, 208, 221, 234, 244
CviKI_1 RGCY 7 cut(s) 9, 101, 185, 208, 221, 234, 244
CviQI GTAC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 195
Eco57I CTGAAG 1 cut(s) 207
Eco72I CACGTG 1 cut(s) 27
EcoO109I RGGNCCY 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 1 cut(s) 199
FaiI YATR 2 cut(s) 177, 197
FaqI GGGAC 1 cut(s) 160
FatI CATG 1 cut(s) 195
FspBI CTAG 2 cut(s) 218, 253
GsaI CCCAGC 1 cut(s) 164
HaeIII GGCC 2 cut(s) 185, 244
HapII CCGG 2 cut(s) 116, 237
HgaI GACGC 1 cut(s) 153
Hin1II CATG 1 cut(s) 199
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
HinfI GANTC 1 cut(s) 21
HpaII CCGG 2 cut(s) 116, 237
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 2 cut(s) 69, 121
Hpy188III TCNNGA 1 cut(s) 225
Hpy8I GTNNAC 2 cut(s) 69, 121
HpyAV CCTTC 1 cut(s) 175
HpyCH4IV ACGT 2 cut(s) 26, 214
HpyCH4V TGCA 1 cut(s) 74
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpySE526I ACGT 2 cut(s) 26, 214
Hsp92II CATG 1 cut(s) 199
LpnPI CCDG 9 cut(s) 99, 114, 118, 129, 174, 190, 210, 231, 250
LweI GCATC 1 cut(s) 83
MaeI CTAG 2 cut(s) 218, 253
MaeII ACGT 2 cut(s) 26, 214
MaeIII GTNAC 2 cut(s) 22, 248
MlyI GAGTC 1 cut(s) 30
MnlI CCTC 3 cut(s) 43, 166, 233
MspI CCGG 2 cut(s) 116, 237
MspR9I CCNGG 2 cut(s) 237, 246
Mva1269I GAATGC 1 cut(s) 206
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 71
NciI CCSGG 1 cut(s) 237
NcoI CCATGG 1 cut(s) 195
NlaIII CATG 1 cut(s) 199
NmuCI GTSAC 2 cut(s) 22, 248
PctI GAATGC 1 cut(s) 206
PinAI ACCGGT 1 cut(s) 115
PleI GAGTC 1 cut(s) 29
PmaCI CACGTG 1 cut(s) 27
PmlI CACGTG 1 cut(s) 27
PpsI GAGTC 1 cut(s) 29
Ppu21I YACGTR 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 244
PspCI CACGTG 1 cut(s) 27
PspFI CCCAGC 1 cut(s) 160
PspGI CCWGG 1 cut(s) 244
PspPI GGNCC 1 cut(s) 242
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
Sau96I GGNCC 1 cut(s) 242
ScaI AGTACT 1 cut(s) 191
SchI GAGTC 1 cut(s) 30
ScrFI CCNGG 2 cut(s) 237, 246
SetI ASST 4 cut(s) 29, 59, 217, 223
SfaNI GCATC 1 cut(s) 83
SgrAI CRCCGGYG 1 cut(s) 115
SspMI CTAG 2 cut(s) 218, 253
StyD4I CCNGG 2 cut(s) 235, 244
StyI CCWWGG 1 cut(s) 195
TaiI ACGT 2 cut(s) 29, 217
TaqI TCGA 1 cut(s) 19
TatI WGTACW 1 cut(s) 189
TseFI GTSAC 2 cut(s) 22, 248
Tsp45I GTSAC 2 cut(s) 22, 248
XcmI CCANNNNNNNNNTGG 1 cut(s) 193
XspI CTAG 2 cut(s) 218, 253
ZrmI AGTACT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.