RLG00000008780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0008695
Physical Location & Seq
Forward (+)
39081863 .. 39084196
2334 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008780

Sequence Viewer

Length: 447 bp
ATGAACTTCCAGAAGGTGAGTAGCCTCTTCATCGTCTTGGTCATAACAGTAGCAATCTTGGGTCATTCTCAGGTTCAAGCGATTAGACTGCTAACCAAGGACTTTGCCGGTGCTAATCATTTGGAGACATACTCCTCCCCATCATCGTTGGCCTACGAGAAGGCCAAATACACCATGGAATGTTGGCTTCAACGACTGTCTTCAGGACCAAGCCCCAAAGGACCTGCCAATAGCCCAAAGTTGGCGCACCACTGCTGCACTGCTGTAGCCAGGTCGCCACTGTCCGTACCCTCCAACCGGCCAGACGCTCAACTGGCTGAGATTCCCGGTCCATCCTCCTCCGATCTAGAGCACCTCCCTGTCAGGATTGGATATGGGGTTACCCACAGATCCAACCCAGAAAGACTCCCCCAAGAGCCCTCCGATTTCGCCTGTGCTAGACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.06

Weight (kDa)

8.77

Isoelectric Point (pI)

61.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 232
AclWI GGATC 1 cut(s) 384
AcoI YGGCCR 1 cut(s) 299
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 1 cut(s) 288
AfiI CCNNNNNNNGG 2 cut(s) 241, 297
AgsI TTSAA 2 cut(s) 77, 191
AjnI CCWGG 1 cut(s) 269
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 1 cut(s) 384
AoxI GGCC 3 cut(s) 150, 162, 299
ApeKI GCWGC 1 cut(s) 255
AspLEI GCGC 1 cut(s) 247
AspS9I GGNCC 3 cut(s) 206, 221, 329
AsuC2I CCSGG 1 cut(s) 327
AsuHPI GGTGA 1 cut(s) 28
AvaII GGWCC 3 cut(s) 206, 221, 329
BanII GRGCYC 1 cut(s) 420
BarI GAAGNNNNNNTAC 2 cut(s) 152, 184
BbsI GAAGAC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 1 cut(s) 242
BccI CCATC 2 cut(s) 148, 340
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BciT130I CCWGG 1 cut(s) 271
BcnI CCSGG 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 2 cut(s) 347, 438
BfmI CTRYAG 1 cut(s) 264
BfuAI ACCTGC 1 cut(s) 232
BisI GCNGC 1 cut(s) 256
BlsI GCNGC 1 cut(s) 257
Bme1390I CCNGG 2 cut(s) 271, 327
Bme18I GGWCC 3 cut(s) 206, 221, 329
BmgT120I GGNCC 3 cut(s) 206, 221, 329
BmrFI CCNGG 2 cut(s) 271, 327
BpiI GAAGAC 1 cut(s) 192
BplI GAGNNNNNCTC 2 cut(s) 116, 148
BpuMI CCSGG 1 cut(s) 327
BsaJI CCNNGG 2 cut(s) 96, 174
Bsc4I CCNNNNNNNGG 2 cut(s) 241, 297
Bse118I RCCGGY 2 cut(s) 107, 297
Bse1I ACTGG 1 cut(s) 318
BseBI CCWGG 1 cut(s) 271
BseDI CCNNGG 2 cut(s) 96, 174
BseGI GGATG 1 cut(s) 332
BseLI CCNNNNNNNGG 2 cut(s) 241, 297
BseMII CTCAG 2 cut(s) 83, 309
BseNI ACTGG 1 cut(s) 318
BseRI GAGGAG 2 cut(s) 124, 328
BseXI GCAGC 1 cut(s) 242
BsgI GTGCAG 1 cut(s) 241
BshFI GGCC 3 cut(s) 152, 164, 301
BsiHKAI GWGCWC 1 cut(s) 354
BsiSI CCGG 3 cut(s) 108, 298, 327
BslI CCNNNNNNNGG 2 cut(s) 241, 297
BsmAI GTCTC 1 cut(s) 119
BsnI GGCC 3 cut(s) 152, 164, 301
Bsp1286I GDGCHC 2 cut(s) 354, 420
Bsp143I GATC 2 cut(s) 343, 389
Bsp19I CCATGG 1 cut(s) 174
BspANI GGCC 3 cut(s) 152, 164, 301
BspCNI CTCAG 2 cut(s) 82, 310
BspMI ACCTGC 1 cut(s) 232
BspPI GGATC 1 cut(s) 384
BsrFI RCCGGY 2 cut(s) 107, 297
BsrI ACTGG 1 cut(s) 318
BssAI RCCGGY 2 cut(s) 107, 297
BssECI CCNNGG 2 cut(s) 96, 174
BssMI GATC 2 cut(s) 343, 389
BssT1I CCWWGG 2 cut(s) 96, 174
Bst2UI CCWGG 1 cut(s) 271
Bst4CI ACNGT 3 cut(s) 49, 198, 282
Bst6I CTCTTC 1 cut(s) 32
BstDEI CTNAG 2 cut(s) 69, 318
BstDSI CCRYGG 1 cut(s) 174
BstEII GGTNACC 1 cut(s) 379
BstF5I GGATG 1 cut(s) 332
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 2 cut(s) 346, 392
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 2 cut(s) 343, 389
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNI CCWGG 1 cut(s) 271
BstPI GGTNACC 1 cut(s) 379
BstSCI CCNGG 2 cut(s) 269, 325
BstSFI CTRYAG 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 242
BstV2I GAAGAC 1 cut(s) 192
BstX2I RGATCY 1 cut(s) 389
BstYI RGATCY 1 cut(s) 389
BsuRI GGCC 3 cut(s) 152, 164, 301
BtgI CCRYGG 1 cut(s) 174
BtsCI GGATG 1 cut(s) 332
BtsI GCAGTG 2 cut(s) 250, 258
BtsIMutI CAGTG 3 cut(s) 250, 258, 278
BveI ACCTGC 1 cut(s) 232
CfoI GCGC 1 cut(s) 247
Cfr10I RCCGGY 2 cut(s) 107, 297
Cfr13I GGNCC 3 cut(s) 206, 221, 329
CseI GACGC 1 cut(s) 314
Csp6I GTAC 1 cut(s) 287
CviAII CATG 1 cut(s) 175
CviQI GTAC 1 cut(s) 287
DdeI CTNAG 2 cut(s) 69, 318
DpnI GATC 2 cut(s) 345, 391
DpnII GATC 2 cut(s) 343, 389
EaeI YGGCCR 1 cut(s) 299
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco130I CCWWGG 2 cut(s) 96, 174
Eco24I GRGCYC 1 cut(s) 420
Eco47I GGWCC 3 cut(s) 206, 221, 329
Eco57I CTGAAG 1 cut(s) 186
Eco91I GGTNACC 1 cut(s) 379
EcoO109I RGGNCCY 1 cut(s) 221
EcoO65I GGTNACC 1 cut(s) 379
EcoRII CCWGG 1 cut(s) 269
EcoT14I CCWWGG 2 cut(s) 96, 174
EcoT38I GRGCYC 1 cut(s) 420
ErhI CCWWGG 2 cut(s) 96, 174
FaeI CATG 1 cut(s) 178
FaiI YATR 4 cut(s) 44, 130, 176, 375
FatI CATG 1 cut(s) 174
Fnu4HI GCNGC 1 cut(s) 256
FokI GGATG 1 cut(s) 319
FriOI GRGCYC 1 cut(s) 420
Fsp4HI GCNGC 1 cut(s) 256
FspBI CTAG 2 cut(s) 347, 438
GlaI GCGC 1 cut(s) 246
GluI GCNGC 1 cut(s) 256
HaeIII GGCC 3 cut(s) 152, 164, 301
HapII CCGG 3 cut(s) 108, 298, 327
HgaI GACGC 1 cut(s) 314
HhaI GCGC 1 cut(s) 247
Hin1II CATG 1 cut(s) 178
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HinfI GANTC 3 cut(s) 322, 405, 441
HpaII CCGG 3 cut(s) 108, 298, 327
HphI GGTGA 1 cut(s) 28
Hpy188I TCNGA 2 cut(s) 343, 424
Hpy188III TCNNGA 4 cut(s) 10, 204, 347, 364
HpyAV CCTTC 2 cut(s) 7, 154
HpyCH4III ACNGT 3 cut(s) 49, 198, 282
HpyCH4V TGCA 1 cut(s) 258
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 2 cut(s) 69, 318
Hsp92II CATG 1 cut(s) 178
HspAI GCGC 1 cut(s) 245
Kzo9I GATC 2 cut(s) 343, 389
Lsp1109I GCAGC 1 cut(s) 242
MaeI CTAG 2 cut(s) 347, 438
MaeIII GTNAC 1 cut(s) 379
MalI GATC 2 cut(s) 345, 391
MboI GATC 2 cut(s) 343, 389
MboII GAAGA 2 cut(s) 19, 192
MflI RGATCY 1 cut(s) 389
MhlI GDGCHC 2 cut(s) 354, 420
MlyI GAGTC 2 cut(s) 399, 435
MmeI TCCRAC 2 cut(s) 318, 417
MnlI CCTC 7 cut(s) 35, 145, 301, 346, 349, 365, 430
MspI CCGG 3 cut(s) 108, 298, 327
MspR9I CCNGG 2 cut(s) 271, 327
MvaI CCWGG 1 cut(s) 271
MwoI GCNNNNNNNGC 1 cut(s) 314
NciI CCSGG 1 cut(s) 327
NcoI CCATGG 1 cut(s) 174
NdeII GATC 2 cut(s) 343, 389
NlaIII CATG 1 cut(s) 178
PfeI GAWTC 1 cut(s) 322
PkrI GCNGC 1 cut(s) 257
PleI GAGTC 2 cut(s) 399, 435
PpsI GAGTC 2 cut(s) 399, 435
PpuMI RGGWCCY 1 cut(s) 221
Psp5II RGGWCCY 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 269
PspEI GGTNACC 1 cut(s) 379
PspGI CCWGG 1 cut(s) 269
PspPI GGNCC 3 cut(s) 206, 221, 329
PspPPI RGGWCCY 1 cut(s) 221
PsuI RGATCY 1 cut(s) 389
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
SatI GCNGC 1 cut(s) 256
Sau3AI GATC 2 cut(s) 343, 389
Sau96I GGNCC 3 cut(s) 206, 221, 329
SchI GAGTC 2 cut(s) 399, 435
ScrFI CCNGG 2 cut(s) 271, 327
SduI GDGCHC 2 cut(s) 354, 420
SetI ASST 5 cut(s) 18, 75, 226, 275, 357
SfcI CTRYAG 1 cut(s) 264
SinI GGWCC 3 cut(s) 206, 221, 329
SspMI CTAG 2 cut(s) 347, 438
StyD4I CCNGG 2 cut(s) 269, 325
StyI CCWWGG 2 cut(s) 96, 174
TaaI ACNGT 3 cut(s) 49, 198, 282
TfiI GAWTC 1 cut(s) 322
TscAI CASTG 3 cut(s) 257, 265, 285
TseI GCWGC 1 cut(s) 255
TspDTI ATGAA 2 cut(s) 17, 19
TspGWI ACGGA 1 cut(s) 274
TspRI CASTG 3 cut(s) 257, 265, 285
VpaK11BI GGWCC 3 cut(s) 206, 221, 329
XbaI TCTAGA 1 cut(s) 346
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XspI CTAG 2 cut(s) 347, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.