Rorug02G0237900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0008695
Physical Location & Seq
Forward (+)
23849880 .. 23851566
1687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0237900.1

Sequence Viewer

Length: 771 bp
ATGAACGACTGCGAGATTATTCCTCCCCCTACTGATATGGGTAGCACATGTGAGTTAGCAGTGGATACCATCAGCAACATAGTTGCTTTTGGTACCGTATTCGATGACGAGGATATGGCAAAGACAATACATGGAGTTCCATTGAAGGAGGGATGTCTTAGGGTATCGGTGAATGGTGAGATTCAAGGTGACGCACGACTTCCTTTTCCTGTATTAGGTGAGATGGAATTGGTTTGTGAAGCTATTGGAAGTCACGTAGCTTGGCCTGAGGAGCTTGTTATTCAGAAACATCCATCAAAGAACAAGAAGAAGAAGAAGTGTCCTATTGTGAAATCATTGTTCGATAAAGCTGAGCTACACCCTTTTGTGCCCAAGCGCTGCAAGTTATTGCACCTACATGAAATTATTAGTCAAAGGGATGAGTTGGATACCTTCGCTTTTATTGATCCAGTAGCCACATATAAATGTGAAAGACCAGGATTTCATCCCTACTTGGTGGACCGGTTGAAAGAGGGGAAGGCTGACCGTATATTTTTTATGCCATATAATCCGGGGGAACATTGGATATTGACAATTATTTGGGAGGACGAAATCTACATGTTGGACCCTTTGCCTAAACCAGTCCATTACCAATCATGGGAGAACATAGTGATAAATGCGGTTAAAGCTTTCAATGCTGAAACGGGTAGGGTTAACAAAGTGCCTAAGGTGAAATTACTTCCGTGGGCGGCAATTAAAGAGTCGGAACTCATATACCCAAGAGCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

29.11

Weight (kDa)

5.87

Isoelectric Point (pI)

37.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 14 - 94 3.4e-12 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 92
AccB1I GGYRCC 1 cut(s) 92
AciI CCGC 2 cut(s) 659, 728
AclWI GGATC 1 cut(s) 440
AfaI GTAC 1 cut(s) 94
AfeI AGCGCT 1 cut(s) 377
AfiI CCNNNNNNNGG 2 cut(s) 215, 637
AflIII ACRYGT 2 cut(s) 47, 597
AgeI ACCGGT 1 cut(s) 501
AgsI TTSAA 4 cut(s) 145, 185, 508, 673
AjnI CCWGG 1 cut(s) 475
AluBI AGCT 6 cut(s) 242, 260, 274, 350, 355, 668
AluI AGCT 6 cut(s) 242, 260, 274, 350, 355, 668
AlwI GGATC 1 cut(s) 440
Aor51HI AGCGCT 1 cut(s) 377
AoxI GGCC 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 378
AsiGI ACCGGT 1 cut(s) 501
Asp718I GGTACC 1 cut(s) 92
AspLEI GCGC 1 cut(s) 378
AspS9I GGNCC 2 cut(s) 499, 604
AsuC2I CCSGG 1 cut(s) 552
AsuHPI GGTGA 5 cut(s) 181, 188, 200, 230, 721
AvaII GGWCC 2 cut(s) 499, 604
AxyI CCTNAGG 2 cut(s) 267, 705
BaeGI GKGCMC 1 cut(s) 372
BanI GGYRCC 1 cut(s) 92
BbvI GCAGC 1 cut(s) 365
BccI CCATC 3 cut(s) 77, 217, 301
BciT130I CCWGG 1 cut(s) 477
BciVI GTATCC 2 cut(s) 58, 421
BcnI CCSGG 1 cut(s) 552
BfoI RGCGCY 1 cut(s) 379
BfuI GTATCC 2 cut(s) 58, 421
BisI GCNGC 2 cut(s) 379, 729
BlpI GCTNAGC 1 cut(s) 351
BlsI GCNGC 2 cut(s) 380, 730
Bme1390I CCNGG 2 cut(s) 477, 552
Bme18I GGWCC 2 cut(s) 499, 604
BmgT120I GGNCC 2 cut(s) 499, 604
BmiI GGNNCC 2 cut(s) 94, 606
BmrFI CCNGG 2 cut(s) 477, 552
Bpu1102I GCTNAGC 1 cut(s) 351
BpuMI CCSGG 1 cut(s) 552
BsaAI YACGTR 1 cut(s) 256
BsaJI CCNNGG 2 cut(s) 551, 722
BsaWI WCCGGW 1 cut(s) 501
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 637
Bse118I RCCGGY 1 cut(s) 501
Bse1I ACTGG 2 cut(s) 449, 620
Bse21I CCTNAGG 2 cut(s) 267, 705
BseBI CCWGG 1 cut(s) 477
BseDI CCNNGG 2 cut(s) 551, 722
BseGI GGATG 4 cut(s) 158, 289, 424, 484
BseLI CCNNNNNNNGG 2 cut(s) 215, 637
BseMII CTCAG 2 cut(s) 258, 342
BseNI ACTGG 2 cut(s) 449, 620
BseRI GAGGAG 1 cut(s) 284
BseSI GKGCMC 1 cut(s) 372
BseXI GCAGC 1 cut(s) 365
BshFI GGCC 1 cut(s) 265
BshNI GGYRCC 1 cut(s) 92
BshTI ACCGGT 1 cut(s) 501
BsiSI CCGG 2 cut(s) 502, 551
BslI CCNNNNNNNGG 2 cut(s) 215, 637
BsnI GGCC 1 cut(s) 265
Bsp1286I GDGCHC 1 cut(s) 372
Bsp143I GATC 1 cut(s) 445
Bsp1720I GCTNAGC 1 cut(s) 351
BspACI CCGC 2 cut(s) 659, 728
BspANI GGCC 1 cut(s) 265
BspCNI CTCAG 2 cut(s) 259, 343
BspLI GGNNCC 2 cut(s) 94, 606
BspPI GGATC 1 cut(s) 440
BspT107I GGYRCC 1 cut(s) 92
BsrFI RCCGGY 1 cut(s) 501
BsrI ACTGG 2 cut(s) 449, 620
BssAI RCCGGY 1 cut(s) 501
BssECI CCNNGG 2 cut(s) 551, 722
BssMI GATC 1 cut(s) 445
Bst2UI CCWGG 1 cut(s) 477
Bst4CI ACNGT 2 cut(s) 97, 527
BstBAI YACGTR 1 cut(s) 256
BstDEI CTNAG 4 cut(s) 158, 267, 351, 705
BstDSI CCRYGG 1 cut(s) 722
BstENI CCTNNNNNAGG 1 cut(s) 213
BstF5I GGATG 4 cut(s) 158, 289, 424, 484
BstH2I RGCGCY 1 cut(s) 379
BstHHI GCGC 1 cut(s) 378
BstKTI GATC 1 cut(s) 448
BstMBI GATC 1 cut(s) 445
BstMWI GCNNNNNNNGC 3 cut(s) 271, 665, 674
BstNI CCWGG 1 cut(s) 477
BstNSI RCATGY 2 cut(s) 51, 601
BstSCI CCNGG 2 cut(s) 475, 550
BstSLI GKGCMC 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 365
Bsu36I CCTNAGG 2 cut(s) 267, 705
BsuI GTATCC 2 cut(s) 58, 421
BsuRI GGCC 1 cut(s) 265
BtgI CCRYGG 1 cut(s) 722
BtsCI GGATG 4 cut(s) 158, 289, 424, 484
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 66
CfoI GCGC 1 cut(s) 378
Cfr10I RCCGGY 1 cut(s) 501
Cfr13I GGNCC 2 cut(s) 499, 604
CseI GACGC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 93
CspAI ACCGGT 1 cut(s) 501
CviAII CATG 5 cut(s) 48, 131, 398, 598, 636
CviJI RGCY 9 cut(s) 242, 260, 265, 274, 350, 355, 455, 521, 668
CviKI_1 RGCY 9 cut(s) 242, 260, 265, 274, 350, 355, 455, 521, 668
CviQI GTAC 1 cut(s) 93
DdeI CTNAG 4 cut(s) 158, 267, 351, 705
DpnI GATC 1 cut(s) 447
DpnII GATC 1 cut(s) 445
Eco47I GGWCC 2 cut(s) 499, 604
Eco47III AGCGCT 1 cut(s) 377
Eco81I CCTNAGG 2 cut(s) 267, 705
EcoNI CCTNNNNNAGG 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 475
FaeI CATG 5 cut(s) 51, 134, 401, 601, 639
FalI AAGNNNNNCTT 1 cut(s) 751
FatI CATG 5 cut(s) 47, 130, 397, 597, 635
Fnu4HI GCNGC 2 cut(s) 379, 729
FokI GGATG 4 cut(s) 165, 276, 431, 471
Fsp4HI GCNGC 2 cut(s) 379, 729
GlaI GCGC 1 cut(s) 377
GluI GCNGC 2 cut(s) 379, 729
HaeII RGCGCY 1 cut(s) 379
HaeIII GGCC 1 cut(s) 265
HapII CCGG 2 cut(s) 502, 551
HgaI GACGC 1 cut(s) 200
HhaI GCGC 1 cut(s) 378
Hin1II CATG 5 cut(s) 51, 134, 401, 601, 639
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HincII GTYRAC 1 cut(s) 694
HindII GTYRAC 1 cut(s) 694
HindIII AAGCTT 1 cut(s) 666
HinfI GANTC 2 cut(s) 181, 740
HpaI GTTAAC 1 cut(s) 694
HpaII CCGG 2 cut(s) 502, 551
HphI GGTGA 5 cut(s) 181, 188, 200, 230, 721
Hpy166II GTNNAC 2 cut(s) 499, 694
Hpy188I TCNGA 2 cut(s) 285, 745
Hpy8I GTNNAC 2 cut(s) 499, 694
HpyAV CCTTC 3 cut(s) 139, 442, 511
HpyCH4III ACNGT 2 cut(s) 97, 527
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 2 cut(s) 381, 391
HpyF10VI GCNNNNNNNGC 3 cut(s) 271, 665, 674
HpyF3I CTNAG 4 cut(s) 158, 267, 351, 705
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 5 cut(s) 51, 134, 401, 601, 639
HspAI GCGC 1 cut(s) 376
KpnI GGTACC 1 cut(s) 96
KspAI GTTAAC 1 cut(s) 694
Kzo9I GATC 1 cut(s) 445
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 8 cut(s) 222, 279, 462, 462, 489, 515, 564, 633
Lsp1109I GCAGC 1 cut(s) 365
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 2 cut(s) 188, 251
MalI GATC 1 cut(s) 447
MboI GATC 1 cut(s) 445
MboII GAAGA 3 cut(s) 319, 322, 325
MhlI GDGCHC 1 cut(s) 372
MluCI AATT 5 cut(s) 227, 402, 573, 713, 732
MlyI GAGTC 1 cut(s) 749
MmeI TCCRAC 3 cut(s) 405, 582, 723
MnlI CCTC 6 cut(s) 33, 103, 142, 262, 505, 577
MseI TTAA 3 cut(s) 663, 693, 735
MslI CAYNNNNRTG 2 cut(s) 396, 463
MspI CCGG 2 cut(s) 502, 551
MspR9I CCNGG 2 cut(s) 477, 552
MvaI CCWGG 1 cut(s) 477
MwoI GCNNNNNNNGC 3 cut(s) 271, 665, 674
NciI CCSGG 1 cut(s) 552
NdeII GATC 1 cut(s) 445
NlaIII CATG 5 cut(s) 51, 134, 401, 601, 639
NlaIV GGNNCC 2 cut(s) 94, 606
NmuCI GTSAC 2 cut(s) 188, 251
NspI RCATGY 2 cut(s) 51, 601
PciI ACATGT 2 cut(s) 47, 597
PfeI GAWTC 1 cut(s) 181
PinAI ACCGGT 1 cut(s) 501
PkrI GCNGC 2 cut(s) 380, 730
PleI GAGTC 1 cut(s) 748
PpsI GAGTC 1 cut(s) 748
Ppu21I YACGTR 1 cut(s) 256
PscI ACATGT 2 cut(s) 47, 597
Psp6I CCWGG 1 cut(s) 475
PspGI CCWGG 1 cut(s) 475
PspN4I GGNNCC 2 cut(s) 94, 606
PspPI GGNCC 2 cut(s) 499, 604
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
RseI CAYNNNNRTG 2 cut(s) 396, 463
SaqAI TTAA 3 cut(s) 663, 693, 735
SatI GCNGC 2 cut(s) 379, 729
Sau3AI GATC 1 cut(s) 445
Sau96I GGNCC 2 cut(s) 499, 604
SchI GAGTC 1 cut(s) 749
ScrFI CCNGG 2 cut(s) 477, 552
SduI GDGCHC 1 cut(s) 372
SinI GGWCC 2 cut(s) 499, 604
SmiMI CAYNNNNRTG 2 cut(s) 396, 463
Sse9I AATT 5 cut(s) 227, 402, 573, 713, 732
SsiI CCGC 2 cut(s) 659, 728
StyD4I CCNGG 2 cut(s) 475, 550
TaaI ACNGT 2 cut(s) 97, 527
TaiI ACGT 1 cut(s) 258
TaqI TCGA 2 cut(s) 102, 342
TasI AATT 5 cut(s) 227, 402, 573, 713, 732
TauI GCSGC 1 cut(s) 731
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 3 cut(s) 663, 693, 735
Tru9I TTAA 3 cut(s) 663, 693, 735
TscAI CASTG 1 cut(s) 66
TseFI GTSAC 2 cut(s) 188, 251
TseI GCWGC 1 cut(s) 378
Tsp45I GTSAC 2 cut(s) 188, 251
TspDTI ATGAA 3 cut(s) 17, 414, 473
TspGWI ACGGA 1 cut(s) 711
TspRI CASTG 1 cut(s) 66
VpaK11BI GGWCC 2 cut(s) 499, 604
XagI CCTNNNNNAGG 1 cut(s) 213
XceI RCATGY 2 cut(s) 51, 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.