Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0008695

Physical Location & Seq

Genomic Coordinates Forward (+)

22253452 .. 22254877

Gene Structure 1426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG132100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGCCCCAAATAGAACATAAAAGAAAGATTCAGACGACAAGAAAAGAAGACGTCGGATGTCACGGCCTCACGACTCACGACCTCCTTCGTGAGAGCCCAAGCAAAATAAGTATTGGCATCTCAAAACAGTTGGAAAATAAGTACAAAGCTGCACAACAGTCCTCTCAGGTCCAAAAAGCACAACTAGCTGTTCAGAGAGGAGAGGAGAATCTTTCACATGAAGCTCTGAAGAGGCGTAAATATTTTGTG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PspA_IM30

Protein Analysis

83

Amino Acids

9.55

Weight (kDa)

9.87

Isoelectric Point (pI)

70.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28460
prunus_persica	Prupe.1G203300_v2.0.a1 Prupe.1G203400_v2.0.a1
pyrus_communis	pycom04g04230 pycom04g04240
rosa_laevigata	RLG00000008779 RLG00000008780
rosa_multiflora	Rmu_sc0007014.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121640 Rroxscaffold_5G00351020 Rroxscaffold_5G00351030
rosa_rugosa	Rorug02G0237900 Rorug04G0067600
rosa_samantha	Rh2AG297300 Rh2BG306100 Rh2CG284400 Rh2DG321100 Rh4AG137000 Rh4BG134600 Rh4CG145200 Rh4DG132100
rosa_wichuraiana	Rw0G006880 Rw4G011140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	54
AcuI	CTGAAG	1 cut(s)	248
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	1 cut(s)	143
AluBI	AGCT	3 cut(s)	149, 188, 224
AluI	AGCT	3 cut(s)	149, 188, 224
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	169
BanII	GRGCYC	1 cut(s)	98
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	136
BceAI	ACGGC	1 cut(s)	79
BfaI	CTAG	1 cut(s)	185
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BmsI	GCATC	1 cut(s)	126
BpiI	GAAGAC	1 cut(s)	54
BsaHI	GRCGYC	1 cut(s)	51
BseGI	GGATG	1 cut(s)	62
BseMII	CTCAG	1 cut(s)	179
BseRI	GAGGAG	2 cut(s)	213, 218
BseXI	GCAGC	1 cut(s)	136
BsgI	GTGCAG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	98
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	1 cut(s)	178
BssNI	GRCGYC	1 cut(s)	51
Bst4CI	ACNGT	2 cut(s)	129, 159
Bst6I	CTCTTC	1 cut(s)	224
BstACI	GRCGYC	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	62
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	136
BstV2I	GAAGAC	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	5 cut(s)	66, 96, 149, 188, 224
CviKI_1	RGCY	5 cut(s)	66, 96, 149, 188, 224
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Eco24I	GRGCYC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	248
EcoT38I	GRGCYC	1 cut(s)	98
FaeI	CATG	1 cut(s)	221
FaiI	YATR	2 cut(s)	18, 219
FatI	CATG	1 cut(s)	217
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	1 cut(s)	69
FriOI	GRGCYC	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	66
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	1 cut(s)	221
HinfI	GANTC	3 cut(s)	28, 73, 208
Hpy188I	TCNGA	4 cut(s)	33, 56, 195, 228
Hpy188III	TCNNGA	3 cut(s)	70, 77, 89
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	2 cut(s)	129, 159
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	1 cut(s)	152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	1 cut(s)	165
HpySE526I	ACGT	1 cut(s)	51
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	1 cut(s)	221
LpnPI	CCDG	1 cut(s)	152
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	59
MboII	GAAGA	2 cut(s)	59, 241
MhlI	GDGCHC	1 cut(s)	98
MlyI	GAGTC	1 cut(s)	67
MmeI	TCCRAC	2 cut(s)	34, 111
MnlI	CCTC	6 cut(s)	77, 92, 172, 191, 196, 225
MwoI	GCNNNNNNNGC	1 cut(s)	185
NlaIII	CATG	1 cut(s)	221
NmuCI	GTSAC	1 cut(s)	59
PfeI	GAWTC	2 cut(s)	28, 208
PkrI	GCNGC	1 cut(s)	151
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
PspPI	GGNCC	1 cut(s)	169
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SatI	GCNGC	1 cut(s)	150
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	1 cut(s)	67
SduI	GDGCHC	1 cut(s)	98
SetI	ASST	6 cut(s)	54, 84, 151, 171, 190, 226
SfaNI	GCATC	1 cut(s)	126
SgeI	CNNG	9 cut(s)	51, 74, 82, 89, 101, 111, 179, 197, 230
SinI	GGWCC	1 cut(s)	169
SspI	AATATT	1 cut(s)	242
SspMI	CTAG	1 cut(s)	185
TaaI	ACNGT	2 cut(s)	129, 159
TaiI	ACGT	1 cut(s)	54
TatI	WGTACW	1 cut(s)	141
TfiI	GAWTC	2 cut(s)	28, 208
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	1 cut(s)	234
VpaK11BI	GGWCC	1 cut(s)	169
XspI	CTAG	1 cut(s)	185
ZraI	GACGTC	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.