Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00255

Orthogroup ID

OG0008695

Physical Location & Seq

Genomic Coordinates Forward (+)

31353 .. 34243

Gene Structure 2891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G006880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGATGATGAATTGACGAAGATGCTTCAGGCCACAGCCCAAACAAAATTAGTAATGTATCGTCAGGAAAGTTCTCATAATCACCATGTATTGGCATCTCAAAACAGTTGGAAAATAAGTACAAAGCTGCACAACAGTCCTCTCAGGTCTGGCAATGTCGACGGAATCAAGGTCCAAAAAGCAAAACTAGCTGTTCAGAGAGGAGAGGAGAATCTTTCACATGAAGCTTTGAAGAGGCGTAAATATTTTCTAGAGAACAAGATACAAGAGGCAAGGTCAAAAGAAGATACACTCAAAGCATGTGCCCAGTCTGCAAGGACTGCTACTGAAGTGAGTGAGATGGTGGGGAATGTTGATATAGGTCATGCCCTTTCTGCTTTTGAAAAGATAGAAGAGAAAGGTAAGGAAGTTGTCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PspA_IM30

Protein Analysis

139

Amino Acids

15.67

Weight (kDa)

8.99

Isoelectric Point (pI)

50.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PspA_IM30	PF04012	84 - 133	6e-08	PspA/IM30 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28460
prunus_persica	Prupe.1G203300_v2.0.a1 Prupe.1G203400_v2.0.a1
pyrus_communis	pycom04g04230 pycom04g04240
rosa_laevigata	RLG00000008779 RLG00000008780
rosa_multiflora	Rmu_sc0007014.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121640 Rroxscaffold_5G00351020 Rroxscaffold_5G00351030
rosa_rugosa	Rorug02G0237900 Rorug04G0067600
rosa_samantha	Rh2AG297300 Rh2BG306100 Rh2CG284400 Rh2DG321100 Rh4AG137000 Rh4BG134600 Rh4CG145200 Rh4DG132100
rosa_wichuraiana	Rw0G006880 Rw4G011140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	91
AccI	GTMKAC	1 cut(s)	159
AcuI	CTGAAG	2 cut(s)	11, 348
AfaI	GTAC	1 cut(s)	121
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	2 cut(s)	232, 383
AluBI	AGCT	3 cut(s)	127, 191, 227
AluI	AGCT	3 cut(s)	127, 191, 227
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	172
BaeGI	GKGCMC	1 cut(s)	307
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	1 cut(s)	334
BfaI	CTAG	2 cut(s)	188, 251
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	172
BmrI	ACTGGG	1 cut(s)	301
BmsI	GCATC	2 cut(s)	12, 104
BmuI	ACTGGG	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	307
Bse3DI	GCAATG	1 cut(s)	160
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMI	GCAATG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	157
BseNI	ACTGG	1 cut(s)	307
BseRI	GAGGAG	2 cut(s)	216, 221
BseSI	GKGCMC	1 cut(s)	307
BseXI	GCAGC	1 cut(s)	114
BsgI	GTGCAG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	91
BsnI	GGCC	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	307
BspANI	GGCC	1 cut(s)	32
BspCNI	CTCAG	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	160
BsrI	ACTGG	1 cut(s)	307
Bst4CI	ACNGT	2 cut(s)	107, 137
Bst6I	CTCTTC	2 cut(s)	227, 387
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstDEI	CTNAG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	10
BstMWI	GCNNNNNNNGC	4 cut(s)	188, 311, 320, 374
BstNSI	RCATGY	1 cut(s)	303
BstSLI	GKGCMC	1 cut(s)	307
BstV1I	GCAGC	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	120
CviAII	CATG	4 cut(s)	86, 221, 300, 365
CviJI	RGCY	5 cut(s)	32, 38, 127, 191, 227
CviKI_1	RGCY	5 cut(s)	32, 38, 127, 191, 227
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	1 cut(s)	143
Eam1104I	CTCTTC	2 cut(s)	227, 387
EarI	CTCTTC	2 cut(s)	227, 387
Eco47I	GGWCC	1 cut(s)	172
Eco57I	CTGAAG	2 cut(s)	11, 348
FaeI	CATG	4 cut(s)	89, 224, 303, 368
FaiI	YATR	6 cut(s)	78, 87, 222, 301, 359, 366
FatI	CATG	4 cut(s)	85, 220, 299, 364
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	128
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	128
FspBI	CTAG	2 cut(s)	188, 251
GluI	GCNGC	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	32
Hin1II	CATG	4 cut(s)	89, 224, 303, 368
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	1 cut(s)	225
HinfI	GANTC	2 cut(s)	165, 211
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	2 cut(s)	65, 251
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	1 cut(s)	164
HpyCH4III	ACNGT	2 cut(s)	107, 137
HpyCH4V	TGCA	2 cut(s)	130, 314
HpyF10VI	GCNNNNNNNGC	4 cut(s)	188, 311, 320, 374
HpyF3I	CTNAG	1 cut(s)	143
Hsp92II	CATG	4 cut(s)	89, 224, 303, 368
LpnPI	CCDG	5 cut(s)	14, 50, 130, 135, 320
Lsp1109I	GCAGC	1 cut(s)	114
LweI	GCATC	2 cut(s)	12, 104
MaeI	CTAG	2 cut(s)	188, 251
MboII	GAAGA	4 cut(s)	31, 244, 296, 404
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	2 cut(s)	11, 47
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	5 cut(s)	150, 194, 199, 228, 262
MseI	TTAA	1 cut(s)	418
MwoI	GCNNNNNNNGC	4 cut(s)	188, 311, 320, 374
NlaIII	CATG	4 cut(s)	89, 224, 303, 368
NspI	RCATGY	1 cut(s)	303
PfeI	GAWTC	2 cut(s)	165, 211
PflMI	CCANNNNNTGG	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	172
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
SalI	GTCGAC	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	418
SatI	GCNGC	1 cut(s)	128
Sau96I	GGNCC	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	307
SetI	ASST	8 cut(s)	129, 149, 174, 193, 229, 278, 364, 403
SfaNI	GCATC	2 cut(s)	12, 104
SinI	GGWCC	1 cut(s)	172
Sse9I	AATT	2 cut(s)	11, 47
SspI	AATATT	1 cut(s)	245
SspMI	CTAG	2 cut(s)	188, 251
TaaI	ACNGT	2 cut(s)	107, 137
TaqI	TCGA	1 cut(s)	159
TasI	AATT	2 cut(s)	11, 47
TatI	WGTACW	1 cut(s)	119
TfiI	GAWTC	2 cut(s)	165, 211
Tru1I	TTAA	1 cut(s)	418
Tru9I	TTAA	1 cut(s)	418
TseI	GCWGC	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	24, 237
TspGWI	ACGGA	1 cut(s)	177
Van91I	CCANNNNNTGG	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	172
XbaI	TCTAGA	1 cut(s)	250
XceI	RCATGY	1 cut(s)	303
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	2 cut(s)	188, 251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.