Rroxscaffold_5G00351020

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
25867590 .. 25873023
5434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00351020.1

Sequence Viewer

Length: 234 bp
ATGAACTTCCAGAAGGTGAGTAGCCTCTTCATCGTCTTGGTCATAACAGTAGCAATCTTGGGTCATTCTCAGGTTCAAGCAATTAGACTGCTACCCGAGGACTTTGCCGGTGCTAATCATTTGGAGACATACTCCTCCCCATCATCGCTGGCCTACGAGAAGGCCAAATACACAATGGAATGTTGGCTTCAACGACTGGCTTCAGGACCAAGCCCCAAAGGACCTGGTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.43

Weight (kDa)

7.93

Isoelectric Point (pI)

50.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 186
AgsI TTSAA 2 cut(s) 77, 191
AjnI CCWGG 1 cut(s) 223
Alw26I GTCTC 1 cut(s) 119
Ama87I CYCGRG 1 cut(s) 95
AoxI GGCC 2 cut(s) 150, 162
AspS9I GGNCC 2 cut(s) 206, 221
AsuHPI GGTGA 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 95
AvaII GGWCC 2 cut(s) 206, 221
BarI GAAGNNNNNNTAC 2 cut(s) 152, 184
BccI CCATC 1 cut(s) 148
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BciT130I CCWGG 1 cut(s) 225
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 1 cut(s) 232
Bme1390I CCNGG 1 cut(s) 225
Bme18I GGWCC 2 cut(s) 206, 221
BmeT110I CYCGRG 1 cut(s) 95
BmgT120I GGNCC 2 cut(s) 206, 221
BmrFI CCNGG 1 cut(s) 225
BplI GAGNNNNNCTC 2 cut(s) 116, 148
BsaJI CCNNGG 1 cut(s) 96
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 201
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 96
BseMII CTCAG 1 cut(s) 83
BseNI ACTGG 1 cut(s) 201
BseRI GAGGAG 1 cut(s) 124
BshFI GGCC 2 cut(s) 152, 164
BsiHKCI CYCGRG 1 cut(s) 95
BsiSI CCGG 1 cut(s) 108
BsmAI GTCTC 1 cut(s) 119
BsnI GGCC 2 cut(s) 152, 164
BsoBI CYCGRG 1 cut(s) 95
BspANI GGCC 2 cut(s) 152, 164
BspCNI CTCAG 1 cut(s) 82
BsrFI RCCGGY 1 cut(s) 107
BsrI ACTGG 1 cut(s) 201
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 1 cut(s) 49
Bst6I CTCTTC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 69
BstMAI GTCTC 1 cut(s) 119
BstNI CCWGG 1 cut(s) 225
BstSCI CCNGG 1 cut(s) 223
BsuRI GGCC 2 cut(s) 152, 164
BtgZI GCGATG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 150
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 2 cut(s) 206, 221
CsiI ACCWGGT 1 cut(s) 223
CviJI RGCY 6 cut(s) 24, 152, 164, 187, 200, 213
CviKI_1 RGCY 6 cut(s) 24, 152, 164, 187, 200, 213
DdeI CTNAG 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco47I GGWCC 2 cut(s) 206, 221
Eco57I CTGAAG 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 223
FaiI YATR 2 cut(s) 44, 130
FspBI CTAG 1 cut(s) 232
HaeIII GGCC 2 cut(s) 152, 164
HapII CCGG 1 cut(s) 108
HpaII CCGG 1 cut(s) 108
HphI GGTGA 1 cut(s) 28
Hpy188III TCNNGA 2 cut(s) 10, 204
HpyAV CCTTC 2 cut(s) 7, 154
HpyCH4III ACNGT 1 cut(s) 49
HpyF3I CTNAG 1 cut(s) 69
LpnPI CCDG 7 cut(s) 23, 56, 121, 134, 182, 189, 210
MabI ACCWGGT 1 cut(s) 223
MaeI CTAG 1 cut(s) 232
MaeIII GTNAC 1 cut(s) 227
MboII GAAGA 1 cut(s) 19
MluCI AATT 1 cut(s) 81
MnlI CCTC 3 cut(s) 35, 91, 145
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 225
MvaI CCWGG 1 cut(s) 225
NmuCI GTSAC 1 cut(s) 227
PflFI GACNNNGTC 1 cut(s) 225
PpuMI RGGWCCY 1 cut(s) 221
Psp5II RGGWCCY 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PspPI GGNCC 2 cut(s) 206, 221
PspPPI RGGWCCY 1 cut(s) 221
PsyI GACNNNGTC 1 cut(s) 225
Sau96I GGNCC 2 cut(s) 206, 221
ScrFI CCNGG 1 cut(s) 225
SetI ASST 3 cut(s) 18, 75, 226
SexAI ACCWGGT 1 cut(s) 223
SinI GGWCC 2 cut(s) 206, 221
Sse9I AATT 1 cut(s) 81
SspMI CTAG 1 cut(s) 232
StyD4I CCNGG 1 cut(s) 223
TaaI ACNGT 1 cut(s) 49
TasI AATT 1 cut(s) 81
TseFI GTSAC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 2 cut(s) 17, 19
Tth111I GACNNNGTC 1 cut(s) 225
VpaK11BI GGWCC 2 cut(s) 206, 221
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XspI CTAG 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.